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{{CL
{{CL
|id=CL:0002539
|alt_id=
|name=aortic smooth muscle cell
|namespace=cell
|def="A smooth muscle cell of the aorta." [GOC:tfm]
|xref=BTO:0004577
|is_a=CL:0000359
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-02-28T01:42:12Z
|def="A smooth muscle cell of the aorta." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002539
|is_a=CL:0000359
|is_obsolete=
|located_in=
|located_in=
|name=aortic smooth muscle cell
|namespace=FANTOM
|obo_creation_date=2011-02-28T01:42:12Z
|part_of=UBERON:0004178
|part_of=UBERON:0004178
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0004577
}}
}}

Latest revision as of 16:43, 12 September 2014

Name:aortic smooth muscle cell
Namespace:FANTOM
Definition:"A smooth muscle cell of the aorta." [GOC:tfm]
Xrefs:
links:
BTO:0004577
Created by:tmeehan
Creation date:2011-02-28T01:42:12Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000359(vascular associated smooth muscle cell)
part_of:UBERON:0004178(aorta smooth muscle tissue)



Children


is a:FF:0000017 (canine aortic smooth muscle cell),FF:0000033 (chicken aortic smooth muscle cell),FF:0000148 (rat aortic smooth muscle cell)
derives from:FF:0000104 (mouse aortic smooth muscle cell sample),FF:0000168 (human aortic smooth muscle cell sample),FF:0000546 (human Aortic Smooth Muscle cells 0min after treatment with FGF2 sample),FF:0000547 (human Aortic Smooth Muscle cells 15min after treatment with FGF2 sample),FF:0000548 (human Aortic Smooth Muscle cells 30min after treatment with FGF2 sample),FF:0000549 (human Aortic Smooth Muscle cells 45min after treatment with FGF2 sample),FF:0000550 (human Aortic Smooth Muscle cells 1hr after treatment with FGF2 sample),FF:0000551 (human Aortic Smooth Muscle cells 2hr after treatment with FGF2 sample),FF:0000552 (human Aortic Smooth Muscle cells 3hr after treatment with FGF2 sample),FF:0000553 (human Aortic Smooth Muscle cells 4hr after treatment with FGF2 sample),FF:0000554 (human Aortic Smooth Muscle cells 5hr after treatment with FGF2 sample),FF:0000555 (human Aortic Smooth Muscle cells 6hr after treatment with FGF2 sample),FF:0000556 (human Aortic Smooth Muscle cells 0min after treatment with IL1b sample),FF:0000557 (human Aortic Smooth Muscle cells 15min after treatment with IL1b sample),FF:0000558 (human Aortic Smooth Muscle cells 30min after treatment with IL1b sample),FF:0000559 (human Aortic Smooth Muscle cells 45min after treatment with IL1b sample),FF:0000560 (human Aortic Smooth Muscle cells 1hr after treatment with IL1b sample),FF:0000561 (human Aortic Smooth Muscle cells 2hr after treatment with IL1b sample),FF:0000562 (human Aortic Smooth Muscle cells 3hr after treatment with IL1b sample),FF:0000563 (human Aortic Smooth Muscle cells 4hr after treatment with IL1b sample),FF:0000564 (human Aortic Smooth Muscle cells 5hr after treatment with IL1b sample),FF:0000565 (human Aortic Smooth Muscle cells 6hr after treatment with IL1b sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002539 (aortic smooth muscle cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_da8ed2b52c783fc488cc3440c810193dp@chr8:69228447..69228492, +
1.58e-86FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_da8ed2b52c783fc488cc3440c810193dp5@Adamts2
1.58e-86FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_da8ed2b52c783fc488cc3440c810193dp5@Adamts2
1.58e-86FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_da8ed2b52c783fc488cc3440c810193dp@chr8:69228447..69228492, +
1.58e-86FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_da8ed2b52c783fc488cc3440c810193dp@chr2:178190171..178190178, +
1.58e-86FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_da8ed2b52c783fc488cc3440c810193dp@chr17:14827154..14827169, -
1.58e-86FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_da8ed2b52c783fc488cc3440c810193dp@chr17:14802633..14802637, -
1.58e-86FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_da8ed2b52c783fc488cc3440c810193dp@chr2:112043522..112043530, -
1.58e-86FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_da8ed2b52c783fc488cc3440c810193dp@chr17:14827154..14827169, -
1.58e-86FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_da8ed2b52c783fc488cc3440c810193dp@chr17:14802633..14802637, -
1.58e-86FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_da8ed2b52c783fc488cc3440c810193dp@chrX:160839744..160839754, +
1.58e-86FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_da8ed2b52c783fc488cc3440c810193dp@chr17:87574327..87574332, +
1.58e-86FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_da8ed2b52c783fc488cc3440c810193dp@chr17:87574327..87574332, +
1.58e-86FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_da8ed2b52c783fc488cc3440c810193dp@chr2:112043522..112043530, -
1.58e-86FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_da8ed2b52c783fc488cc3440c810193dp@chr2:178190171..178190178, +
1.58e-86FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_da8ed2b52c783fc488cc3440c810193dp@chrX:160839744..160839754, +
5.79e-79FFCP PHASE2:Hg19::chr1:110429102..110429103,+#_8bd6d35378c3baea16d855a8bb71b614p@chr1:110429102..110429103, +
5.79e-79FFCP PHASE1:Hg19::chr1:110429102..110429103,+#_8bd6d35378c3baea16d855a8bb71b614p@chr1:110429102..110429103, +
1.33e-65FFCP PHASE1:Mm9::chr17:71340031..71340044,-#_c312fb4b369ca1a25207837d30fdce38p5@Myl12b
1.33e-65FFCP PHASE2:Mm9::chr11:118164535..118164544,-#_c312fb4b369ca1a25207837d30fdce38p@chr11:118164535..118164544, -
1.33e-65FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_c312fb4b369ca1a25207837d30fdce38p@chrX:160840025..160840037, +
1.33e-65FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_c312fb4b369ca1a25207837d30fdce38p@chrX:160840025..160840037, +
1.33e-65FFCP PHASE2:Mm9::chr6:128920492..128920498,-#_c312fb4b369ca1a25207837d30fdce38p@chr6:128920492..128920498, -
1.33e-65FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_c312fb4b369ca1a25207837d30fdce38p@chrX:160840048..160840057, +
1.33e-65FFCP PHASE1:Mm9::chr6:128920492..128920498,-#_c312fb4b369ca1a25207837d30fdce38p@chr6:128920492..128920498, -
1.33e-65FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_c312fb4b369ca1a25207837d30fdce38p@chrX:160840048..160840057, +
1.33e-65FFCP PHASE2:Mm9::chr17:71340031..71340044,-#_c312fb4b369ca1a25207837d30fdce38p5@Myl12b
1.33e-65FFCP PHASE1:Mm9::chr11:118164535..118164544,-#_c312fb4b369ca1a25207837d30fdce38p@chr11:118164535..118164544, -
1.33e-65FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_c312fb4b369ca1a25207837d30fdce38p6@Npy1r
1.33e-65FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_c312fb4b369ca1a25207837d30fdce38p6@Npy1r
2.21e-65FFCP PHASE2:Mm9::chr4:145000183..145000220,+#_850fdf534d2363b97dc005b55c6234e2p1@ENSMUST00000150529
2.21e-65FFCP PHASE1:Mm9::chr4:145000183..145000220,+#_850fdf534d2363b97dc005b55c6234e2p1@ENSMUST00000150529
3.28e-58FFCP PHASE1:Mm9::chr17:14817013..14817022,-#_7528cf54b187d2986ab496a0195afd81p@chr17:14817013..14817022, -
3.28e-58FFCP PHASE1:Mm9::chr10:33816181..33816195,-#_7528cf54b187d2986ab496a0195afd81p@chr10:33816181..33816195, -
3.28e-58FFCP PHASE1:Mm9::chr14:24251697..24251707,+#_7528cf54b187d2986ab496a0195afd81p@chr14:24251697..24251707, +
3.28e-58FFCP PHASE2:Mm9::chr17:14817013..14817022,-#_7528cf54b187d2986ab496a0195afd81p@chr17:14817013..14817022, -
3.28e-58FFCP PHASE1:Mm9::chr8:69857155..69857159,+#_7528cf54b187d2986ab496a0195afd81p@chr8:69857155..69857159, +
3.28e-58FFCP PHASE2:Mm9::chr8:69857155..69857159,+#_7528cf54b187d2986ab496a0195afd81p@chr8:69857155..69857159, +
3.28e-58FFCP PHASE2:Mm9::chr14:24251697..24251707,+#_7528cf54b187d2986ab496a0195afd81p@chr14:24251697..24251707, +
3.28e-58FFCP PHASE1:Mm9::chr10:96946110..96946113,+#_7528cf54b187d2986ab496a0195afd81p@chr10:96946110..96946113, +
3.28e-58FFCP PHASE2:Mm9::chr10:96946110..96946113,+#_7528cf54b187d2986ab496a0195afd81p@chr10:96946110..96946113, +
3.28e-58FFCP PHASE1:Mm9::chr17:87544959..87544962,+#_7528cf54b187d2986ab496a0195afd81p@chr17:87544959..87544962, +
3.28e-58FFCP PHASE2:Mm9::chr17:87544959..87544962,+#_7528cf54b187d2986ab496a0195afd81p@chr17:87544959..87544962, +
3.28e-58FFCP PHASE2:Mm9::chr17:78907550..78907557,+#_7528cf54b187d2986ab496a0195afd81p8@Vit
3.28e-58FFCP PHASE2:Mm9::chrX:160839012..160839023,+#_7528cf54b187d2986ab496a0195afd81p@chrX:160839012..160839023, +
3.28e-58FFCP PHASE2:Mm9::chr1:127573425..127573432,+#_7528cf54b187d2986ab496a0195afd81p12@Gpr39
3.28e-58FFCP PHASE1:Mm9::chr1:127573425..127573432,+#_7528cf54b187d2986ab496a0195afd81p12@Gpr39
3.28e-58FFCP PHASE1:Mm9::chr17:78907550..78907557,+#_7528cf54b187d2986ab496a0195afd81p8@Vit
3.28e-58FFCP PHASE2:Mm9::chrX:160811352..160811356,-#_7528cf54b187d2986ab496a0195afd81p@chrX:160811352..160811356, -
3.28e-58FFCP PHASE2:Mm9::chr10:33816181..33816195,-#_7528cf54b187d2986ab496a0195afd81p@chr10:33816181..33816195, -
3.28e-58FFCP PHASE1:Mm9::chrX:160811352..160811356,-#_7528cf54b187d2986ab496a0195afd81p@chrX:160811352..160811356, -
3.28e-58FFCP PHASE1:Mm9::chrX:160839012..160839023,+#_7528cf54b187d2986ab496a0195afd81p@chrX:160839012..160839023, +
1.26e-55FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_c20c6c761cf8bc0a643320251d95d440p@chr6:53359400..53359406, +
1.26e-55FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_c20c6c761cf8bc0a643320251d95d440p@chr6:53359400..53359406, +
4.9e-53FFCP PHASE1:Mm9::chr2:113589030..113589077,-#_0629a62a960d5ca8df99e182be007bb5p@chr2:113589030..113589077, -
4.9e-53FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_0629a62a960d5ca8df99e182be007bb5p@chr7:91081998..91082010, -
4.9e-53FFCP PHASE1:Mm9::chr10:67821185..67821217,-#_0629a62a960d5ca8df99e182be007bb5p@chr10:67821185..67821217, -
4.9e-53FFCP PHASE2:Mm9::chr10:67821185..67821217,-#_0629a62a960d5ca8df99e182be007bb5p@chr10:67821185..67821217, -
4.9e-53FFCP PHASE1:Mm9::chr17:29227828..29227839,-#_0629a62a960d5ca8df99e182be007bb5p@chr17:29227828..29227839, -
4.9e-53FFCP PHASE2:Mm9::chr2:113589030..113589077,-#_0629a62a960d5ca8df99e182be007bb5p@chr2:113589030..113589077, -
4.9e-53FFCP PHASE1:Mm9::chr14:24251717..24251731,+#_0629a62a960d5ca8df99e182be007bb5p@chr14:24251717..24251731, +
4.9e-53FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_0629a62a960d5ca8df99e182be007bb5p5@Npy1r
4.9e-53FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_0629a62a960d5ca8df99e182be007bb5p@chr10:67598037..67598049, -
4.9e-53FFCP PHASE2:Mm9::chr14:24251717..24251731,+#_0629a62a960d5ca8df99e182be007bb5p@chr14:24251717..24251731, +
4.9e-53FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_0629a62a960d5ca8df99e182be007bb5p5@Npy1r
4.9e-53FFCP PHASE2:Mm9::chr17:29227828..29227839,-#_0629a62a960d5ca8df99e182be007bb5p@chr17:29227828..29227839, -
4.9e-53FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_0629a62a960d5ca8df99e182be007bb5p@chr7:91081998..91082010, -
4.9e-53FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_0629a62a960d5ca8df99e182be007bb5p4@Il6st
4.9e-53FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_0629a62a960d5ca8df99e182be007bb5p4@Il6st
4.9e-53FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_0629a62a960d5ca8df99e182be007bb5p@chr10:67598037..67598049, -
7.35e-53FFCP PHASE2:Mm9::chr4:58219542..58219545,-#_6edb641d9ea57a8ab5a29761569df68ep11@Svep1
7.35e-53FFCP PHASE1:Mm9::chr4:58219542..58219545,-#_6edb641d9ea57a8ab5a29761569df68ep11@Svep1
1.1e-52FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_2a0a2fc931e602e6767879d8e086da27p@chrX:160838787..160838800, +
1.1e-52FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_2a0a2fc931e602e6767879d8e086da27p@chrX:160838787..160838800, +
1.65e-52FFCP PHASE2:Mm9::chr1:137662814..137662817,+#_faf6bad4292249e8f40e7c03515c360ep5@Phlda3
1.65e-52FFCP PHASE1:Mm9::chr1:137662814..137662817,+#_faf6bad4292249e8f40e7c03515c360ep5@Phlda3
5.51e-52FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_54c7a521ca0ff56dcf701f4addc6ae50p@chr2:65009852..65009866, -
5.51e-52FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_54c7a521ca0ff56dcf701f4addc6ae50p@chr2:65009852..65009866, -
1.18e-44FFCP PHASE2:Mm9::chr2:178190136..178190151,+#_57fefcd4f2079473157c50c6ce0bf61bp@chr2:178190136..178190151, +
1.18e-44FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_57fefcd4f2079473157c50c6ce0bf61bp@chrX:160838683..160838694, +
1.18e-44FFCP PHASE1:Mm9::chr13:119579287..119579292,+#_57fefcd4f2079473157c50c6ce0bf61bp@chr13:119579287..119579292, +
1.18e-44FFCP PHASE2:Mm9::chr11:86417559..86417568,+#_57fefcd4f2079473157c50c6ce0bf61bp@chr11:86417559..86417568, +
1.18e-44FFCP PHASE2:Mm9::chr1:127573864..127573879,+#_57fefcd4f2079473157c50c6ce0bf61bp10@Gpr39
1.18e-44FFCP PHASE1:Mm9::chr1:127573864..127573879,+#_57fefcd4f2079473157c50c6ce0bf61bp10@Gpr39
1.18e-44FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_57fefcd4f2079473157c50c6ce0bf61bp@chr17:14813242..14813246, -
1.18e-44FFCP PHASE1:Mm9::chr11:86417559..86417568,+#_57fefcd4f2079473157c50c6ce0bf61bp@chr11:86417559..86417568, +
1.18e-44FFCP PHASE1:Mm9::chr2:178190136..178190151,+#_57fefcd4f2079473157c50c6ce0bf61bp@chr2:178190136..178190151, +
1.18e-44FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_57fefcd4f2079473157c50c6ce0bf61bp@chr17:14813242..14813246, -
1.18e-44FFCP PHASE2:Mm9::chr13:119579287..119579292,+#_57fefcd4f2079473157c50c6ce0bf61bp@chr13:119579287..119579292, +
1.18e-44FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_57fefcd4f2079473157c50c6ce0bf61bp@chrX:160838683..160838694, +
1.66e-44FFCP PHASE1:Mm9::chr13:119503185..119503195,+#_7234c2dd47e2eaaf93e972d268eb77f5p9@Fgf10
1.66e-44FFCP PHASE2:Mm9::chrX:160839663..160839673,+#_7234c2dd47e2eaaf93e972d268eb77f5p@chrX:160839663..160839673, +
1.66e-44FFCP PHASE1:Mm9::chrX:160839663..160839673,+#_7234c2dd47e2eaaf93e972d268eb77f5p@chrX:160839663..160839673, +
1.66e-44FFCP PHASE2:Mm9::chr13:119503185..119503195,+#_7234c2dd47e2eaaf93e972d268eb77f5p9@Fgf10
2.33e-44FFCP PHASE2:Mm9::chr17:75790300..75790304,+#_db1dd6fff6a81fef588dda2360540692p@chr17:75790300..75790304, +
2.33e-44FFCP PHASE1:Mm9::chr17:75790300..75790304,+#_db1dd6fff6a81fef588dda2360540692p@chr17:75790300..75790304, +
3.27e-44FFCP PHASE2:Mm9::chr1:127573708..127573719,+#_05a6e45a31fef1480793222371eac322p9@Gpr39
3.27e-44FFCP PHASE1:Mm9::chr1:127573708..127573719,+#_05a6e45a31fef1480793222371eac322p9@Gpr39
4.58e-44FFCP PHASE2:Mm9::chr17:14813991..14813999,+#_706ecd93da33e45b18861d9fedf09f70p@chr17:14813991..14813999, +
4.58e-44FFCP PHASE1:Mm9::chr17:14813991..14813999,+#_706ecd93da33e45b18861d9fedf09f70p@chr17:14813991..14813999, +

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