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{{CL
{{CL
|id=CL:0002595
|alt_id=
|name=smooth muscle cell of the subclavian artery
|namespace=cell
|def="A smooth muscle cell of the subclavian artery." [GOC:tfm]
|xref=
|is_a=CL:0000359
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-06T05:01:52Z
|def="A smooth muscle cell of the subclavian artery." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002595
|is_a=CL:0000359
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=smooth muscle cell of the subclavian artery
|namespace=FANTOM
|obo_creation_date=2011-03-06T05:01:52Z
|part_of=UBERON:0001533
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:45, 12 September 2014

Name:smooth muscle cell of the subclavian artery
Namespace:FANTOM
Definition:"A smooth muscle cell of the subclavian artery." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T05:01:52Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000359(vascular associated smooth muscle cell)
part_of:UBERON:0001533(subclavian artery)



Children


is a:CL:0002593 (smooth muscle cell of the internal thoracic artery)
derives from:FF:0000175 (human smooth muscle cell of subclavian artery sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11287-116I9 (Smooth Muscle Cells - Internal Thoracic Artery, donor1)
  • 11289-117A2 (Smooth Muscle Cells - Subclavian Artery, donor1)
  • 11364-117I5 (Smooth Muscle Cells - Internal Thoracic Artery, donor2)
  • 11366-117I7 (Smooth Muscle Cells - Subclavian Artery, donor2)
  • 11436-118H5 (Smooth Muscle Cells - Internal Thoracic Artery, donor3)
  • 11438-118H7 (Smooth Muscle Cells - Subclavian Artery, donor3)

Mouse (Mus musculus)

  • 11287-116I9 (Smooth Muscle Cells - Internal Thoracic Artery, donor1)
  • 11289-117A2 (Smooth Muscle Cells - Subclavian Artery, donor1)
  • 11364-117I5 (Smooth Muscle Cells - Internal Thoracic Artery, donor2)
  • 11366-117I7 (Smooth Muscle Cells - Subclavian Artery, donor2)
  • 11436-118H5 (Smooth Muscle Cells - Internal Thoracic Artery, donor3)
  • 11438-118H7 (Smooth Muscle Cells - Subclavian Artery, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002595 (smooth muscle cell of the subclavian artery), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.65e-59FFCP PHASE2:Hg19::chr19:18319115..18319122,+#_9750e2c3f2ff6c42150680876e8e32cep@chr19:18319115..18319122, +
1.65e-59FFCP PHASE1:Hg19::chr19:18319115..18319122,+#_9750e2c3f2ff6c42150680876e8e32cep@chr19:18319115..18319122, +
3.22e-57FFCP PHASE1:Hg19::chr9:3898831..3898843,-#_f62e85c2a7b91ed5e15e1598c0415e32p@chr9:3898831..3898843, -
3.22e-57FFCP PHASE2:Hg19::chr9:3898831..3898843,-#_f62e85c2a7b91ed5e15e1598c0415e32p@chr9:3898831..3898843, -
1.94e-51FFCP PHASE1:Hg19::chr13:67922393..67922399,-#_295efaa1b7d2308843b76267a06c4213p@chr13:67922393..67922399, -
1.94e-51FFCP PHASE2:Hg19::chr13:67922393..67922399,-#_295efaa1b7d2308843b76267a06c4213p@chr13:67922393..67922399, -
2.3e-51FFCP PHASE2:Hg19::chr8:4812273..4812274,-#_4c8efb0d58953af208ce0173f1968ad5p@chr8:4812273..4812274, -
2.3e-51FFCP PHASE1:Hg19::chr8:4812273..4812274,-#_4c8efb0d58953af208ce0173f1968ad5p@chr8:4812273..4812274, -
1.42e-40FFCP PHASE2:Hg19::chr11:102668160..102668174,+#_a1b66a70f8c814a5882964ede05f077dp@chr11:102668160..102668174, +
1.42e-40FFCP PHASE1:Hg19::chr11:102668160..102668174,+#_a1b66a70f8c814a5882964ede05f077dp@chr11:102668160..102668174, +
1.48e-40FFCP PHASE2:Hg19::chr21:29911657..29911665,+#_d3691e0068f6c38975e2711bdd8dff83p2@LINC00161
1.48e-40FFCP PHASE1:Hg19::chr21:29911657..29911665,+#_d3691e0068f6c38975e2711bdd8dff83p2@LINC00161
3.31e-40FFCP PHASE1:Hg19::chr9:3899086..3899097,-#_af04ac070d32747e3a52dd2fbc7ea984p@chr9:3899086..3899097, -
3.31e-40FFCP PHASE2:Hg19::chr9:3899086..3899097,-#_af04ac070d32747e3a52dd2fbc7ea984p@chr9:3899086..3899097, -
3.31e-40FFCP PHASE2:Hg19::chr6:50692227..50692236,+#_af04ac070d32747e3a52dd2fbc7ea984p@chr6:50692227..50692236, +
3.31e-40FFCP PHASE1:Hg19::chr6:50692227..50692236,+#_af04ac070d32747e3a52dd2fbc7ea984p@chr6:50692227..50692236, +
4.35e-40FFCP PHASE1:Hg19::chrY:16915943..16915949,-#_bf7c191c9fd899655b04c9c556c8b86ap1@NLGN4Y-AS1
4.35e-40FFCP PHASE2:Hg19::chrY:16915943..16915949,-#_bf7c191c9fd899655b04c9c556c8b86ap1@NLGN4Y-AS1
2.29e-38FFCP PHASE2:Hg19::chr7:93516564..93516575,+#_e57e8bfd5a27ffe582d928c684b502f7p@chr7:93516564..93516575, +
2.29e-38FFCP PHASE1:Hg19::chr7:93516564..93516575,+#_e57e8bfd5a27ffe582d928c684b502f7p@chr7:93516564..93516575, +
2.0e-36FFCP PHASE2:Hg19::chr19:55877364..55877367,-#_a034f8dd14f3273239abaa7afcbae834p@chr19:55877364..55877367, -
2.0e-36FFCP PHASE1:Hg19::chr19:55877364..55877367,-#_a034f8dd14f3273239abaa7afcbae834p@chr19:55877364..55877367, -
2.07e-36FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_28d1461f269629fe2b1bd3488317db76p@chr6:53359400..53359406, +
2.07e-36FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_28d1461f269629fe2b1bd3488317db76p@chr6:53359400..53359406, +
2.55e-36FFCP PHASE2:Hg19::chr7:93519591..93519595,-#_5e660e0f90e996ede1c6d609bfa9fe5dp9@TFPI2
2.55e-36FFCP PHASE1:Hg19::chr7:93519591..93519595,-#_5e660e0f90e996ede1c6d609bfa9fe5dp9@TFPI2
7.75e-34FFCP PHASE2:Hg19::chr21:30000326..30000330,+#_351130c55d7b9c86eeccc20735662f26p@chr21:30000326..30000330, +
7.75e-34FFCP PHASE1:Hg19::chr21:30000326..30000330,+#_351130c55d7b9c86eeccc20735662f26p@chr21:30000326..30000330, +
6.67e-33FFCP PHASE1:Hg19::chr9:3898804..3898817,-#_f63597f0626490d18a0598f805a0716ep@chr9:3898804..3898817, -
6.67e-33FFCP PHASE2:Hg19::chr9:3898804..3898817,-#_f63597f0626490d18a0598f805a0716ep@chr9:3898804..3898817, -
9.62e-32FFCP PHASE2:Hg19::chr4:74702707..74702718,+#_eabd76d094a9802898cd37ce111975adp7@CXCL6
9.62e-32FFCP PHASE1:Hg19::chr4:74702707..74702718,+#_eabd76d094a9802898cd37ce111975adp7@CXCL6
2.86e-30FFCP PHASE1:Hg19::chr11:27723059..27723067,-#_6740f341cfc448753c51cdd8de690b63p11@BDNF
2.86e-30FFCP PHASE2:Hg19::chr11:27723059..27723067,-#_6740f341cfc448753c51cdd8de690b63p11@BDNF
6.35e-30FFCP PHASE1:Hg19::chr12:63025600..63025629,+#_9a12846e3ab8e2be9d48c8748de2d57ep@chr12:63025600..63025629, +
6.35e-30FFCP PHASE2:Hg19::chr12:63025600..63025629,+#_9a12846e3ab8e2be9d48c8748de2d57ep@chr12:63025600..63025629, +
1.14e-29FFCP PHASE1:Hg19::chr7:93515914..93515935,-#_0bd172573f2d45e4a1e66bf1fb8feb15p@chr7:93515914..93515935, -
1.14e-29FFCP PHASE2:Hg19::chr7:93515914..93515935,-#_0bd172573f2d45e4a1e66bf1fb8feb15p@chr7:93515914..93515935, -
3.44e-29FFCP PHASE2:Hg19::chr10:35930025..35930031,-#_e3b44668a6323aeaf7ad26c75eaa41b9p1@FZD8
3.44e-29FFCP PHASE1:Hg19::chr10:35930025..35930031,-#_e3b44668a6323aeaf7ad26c75eaa41b9p1@FZD8
5.33e-29FFCP PHASE2:Hg19::chrX:142113711..142113717,+#_dfaf394a6da737f8fba3b877a23a7dc4p1@SPANXN4
5.33e-29FFCP PHASE1:Hg19::chrX:142113711..142113717,+#_dfaf394a6da737f8fba3b877a23a7dc4p1@SPANXN4
1.16e-28FFCP PHASE1:Hg19::chr11:102662218..102662229,-#_22415daef6ca25fc5a564f6d44355f9ep@chr11:102662218..102662229, -
1.16e-28FFCP PHASE2:Hg19::chr11:102662218..102662229,-#_22415daef6ca25fc5a564f6d44355f9ep@chr11:102662218..102662229, -
2.11e-28FFCP PHASE2:Hg19::chr4:54931877..54931892,-#_66de3796f4d60f25d4067f878969a78fp@chr4:54931877..54931892, -
2.11e-28FFCP PHASE1:Hg19::chr4:54931877..54931892,-#_66de3796f4d60f25d4067f878969a78fp@chr4:54931877..54931892, -
4.13e-28FFCP PHASE1:Hg19::chr9:33797932..33797960,-#_05ecb8d5af8ba581a00976e79c72caecp@chr9:33797932..33797960, -
4.13e-28FFCP PHASE2:Hg19::chr9:33797932..33797960,-#_05ecb8d5af8ba581a00976e79c72caecp@chr9:33797932..33797960, -
5.46e-28FFCP PHASE2:Hg19::chr19:52076425..52076440,+#_a30e47d1088d0e2fd1634469080bd83ep2@ZNF175
5.46e-28FFCP PHASE1:Hg19::chr19:52076425..52076440,+#_a30e47d1088d0e2fd1634469080bd83ep2@ZNF175
5.51e-28FFCP PHASE2:Hg19::chr17:32583293..32583323,-#_f324cef18d77da6e5fba21309f642a2fp@chr17:32583293..32583323, -
5.51e-28FFCP PHASE1:Hg19::chr17:32583293..32583323,-#_f324cef18d77da6e5fba21309f642a2fp@chr17:32583293..32583323, -
8.03e-28FFCP PHASE2:Hg19::chr5:150157860..150157883,+#_6e23273ac0817b8d8fe92f504c77ad1bp4@C5orf62
8.03e-28FFCP PHASE1:Hg19::chr5:150157860..150157883,+#_6e23273ac0817b8d8fe92f504c77ad1bp4@C5orf62
1.46e-27FFCP PHASE2:Hg19::chr3:172351514..172351536,-#_59283fbcac21bba53895d1bd44543ceep@chr3:172351514..172351536, -
1.46e-27FFCP PHASE1:Hg19::chr3:172351514..172351536,-#_59283fbcac21bba53895d1bd44543ceep@chr3:172351514..172351536, -
1.66e-27FFCP PHASE2:Hg19::chr2:113587914..113587925,+#_31b9471d58e0167ffc78360453368a9fp@chr2:113587914..113587925, +
1.66e-27FFCP PHASE1:Hg19::chr2:113587914..113587925,+#_31b9471d58e0167ffc78360453368a9fp@chr2:113587914..113587925, +
2.38e-27FFCP PHASE2:Hg19::chr4:169022528..169022531,+#_abfa887e2cbeacf0a4ff418071b77d43p@chr4:169022528..169022531, +
2.38e-27FFCP PHASE1:Hg19::chr4:169022528..169022531,+#_abfa887e2cbeacf0a4ff418071b77d43p@chr4:169022528..169022531, +
2.72e-27FFCP PHASE2:Hg19::chr18:68919827..68919832,+#_3322f46e3cc3efd312b99f020a36fc2dp@chr18:68919827..68919832, +
2.72e-27FFCP PHASE1:Hg19::chr10:77056181..77056190,+#_3322f46e3cc3efd312b99f020a36fc2dp2@ZNF503-AS1
2.72e-27FFCP PHASE1:Hg19::chr18:68919827..68919832,+#_3322f46e3cc3efd312b99f020a36fc2dp@chr18:68919827..68919832, +
2.72e-27FFCP PHASE2:Hg19::chr10:77056181..77056190,+#_3322f46e3cc3efd312b99f020a36fc2dp2@ZNF503-AS1
4.63e-27FFCP PHASE1:Hg19::chr3:151514337..151514348,+#_6f67c520710579df9c0b0de270a43925p@chr3:151514337..151514348, +
4.63e-27FFCP PHASE2:Hg19::chr3:157206111..157206139,-#_6f67c520710579df9c0b0de270a43925p@chr3:157206111..157206139, -
4.63e-27FFCP PHASE1:Hg19::chr3:157206111..157206139,-#_6f67c520710579df9c0b0de270a43925p@chr3:157206111..157206139, -
4.63e-27FFCP PHASE2:Hg19::chr3:151514337..151514348,+#_6f67c520710579df9c0b0de270a43925p@chr3:151514337..151514348, +
6.82e-27FFCP PHASE1:Hg19::chr5:54281153..54281165,-#_85b05c16e5939683de9d1bb2cfa6d43ap1@AB590689
6.82e-27FFCP PHASE2:Hg19::chr5:54281153..54281165,-#_85b05c16e5939683de9d1bb2cfa6d43ap1@AB590689
7.86e-27FFCP PHASE2:Hg19::chr4:74902919..74902931,-#_f71d19a2418624eb80947a0f58ca3b5ap@chr4:74902919..74902931, -
7.86e-27FFCP PHASE1:Hg19::chr4:74902919..74902931,-#_f71d19a2418624eb80947a0f58ca3b5ap@chr4:74902919..74902931, -
9.32e-27FFCP PHASE2:Hg19::chr7:93519528..93519538,-#_fce4153389c2a4d01183a0ffbc0d5b53p7@TFPI2
9.32e-27FFCP PHASE1:Hg19::chr7:93519528..93519538,-#_fce4153389c2a4d01183a0ffbc0d5b53p7@TFPI2
1.7e-26FFCP PHASE1:Hg19::chr11:102668185..102668198,-#_c98ec5a7b5e61f0558f75c38161de903p12@MMP1
1.7e-26FFCP PHASE2:Hg19::chr11:102668185..102668198,-#_c98ec5a7b5e61f0558f75c38161de903p12@MMP1
3.65e-26FFCP PHASE2:Hg19::chr7:93519576..93519598,+#_5ec89969c55add601c9139cefcdeabe4p@chr7:93519576..93519598, +
3.65e-26FFCP PHASE1:Hg19::chr7:93519576..93519598,+#_5ec89969c55add601c9139cefcdeabe4p@chr7:93519576..93519598, +
4.43e-26FFCP PHASE2:Hg19::chr1:12010434..12010450,+#_66b4086cadc5adac01e3becd86a0caf1p@chr1:12010434..12010450, +
4.43e-26FFCP PHASE1:Hg19::chr1:12010434..12010450,+#_66b4086cadc5adac01e3becd86a0caf1p@chr1:12010434..12010450, +
4.97e-26FFCP PHASE2:Hg19::chr8:42042635..42042650,-#_84a706138b589bbed5635cba5d6f2660p4@PLAT
4.97e-26FFCP PHASE1:Hg19::chr8:42042635..42042650,-#_84a706138b589bbed5635cba5d6f2660p4@PLAT
8.4e-26FFCP PHASE1:Hg19::chr7:93515840..93515856,-#_fb8c6ba6d41813f36e376174d0ca4a60p@chr7:93515840..93515856, -
8.4e-26FFCP PHASE2:Hg19::chr7:93515840..93515856,-#_fb8c6ba6d41813f36e376174d0ca4a60p@chr7:93515840..93515856, -
2.89e-25FFCP PHASE2:Hg19::chr9:6257179..6257191,+#_dc0024d664057cc3982b7976dd521010p@chr9:6257179..6257191, +
2.89e-25FFCP PHASE1:Hg19::chr9:6257179..6257191,+#_dc0024d664057cc3982b7976dd521010p@chr9:6257179..6257191, +
3.95e-25FFCP PHASE2:Hg19::chr8:42044977..42044996,-#_cc3c741e1acbb174de74d07b61dcfa32p@chr8:42044977..42044996, -
3.95e-25FFCP PHASE1:Hg19::chr8:42044977..42044996,-#_cc3c741e1acbb174de74d07b61dcfa32p@chr8:42044977..42044996, -
4.18e-25FFCP PHASE2:Hg19::chr21:28216589..28216607,-#_48695fa96ccbb3155279c2b6a0e09d64p2@ADAMTS1
4.18e-25FFCP PHASE1:Hg19::chr21:28216589..28216607,-#_48695fa96ccbb3155279c2b6a0e09d64p2@ADAMTS1
1.2e-24FFCP PHASE2:Hg19::chr3:112081052..112081065,-#_c750c1ebb88d918f99b08a32f19358f4p@chr3:112081052..112081065, -
1.2e-24FFCP PHASE1:Hg19::chr3:112081052..112081065,-#_c750c1ebb88d918f99b08a32f19358f4p@chr3:112081052..112081065, -
2.08e-24FFCP PHASE1:Hg19::chr3:67141193..67141198,+#_7503719273af841a4c730bba72ff47b6p@chr3:67141193..67141198, +
2.08e-24FFCP PHASE2:Hg19::chr3:67141193..67141198,+#_7503719273af841a4c730bba72ff47b6p@chr3:67141193..67141198, +
4.08e-24FFCP PHASE2:Hg19::chr8:122653115..122653124,-#_ce75a09d48a99e391e10766b5d30688dp7@HAS2
4.08e-24FFCP PHASE1:Hg19::chr8:122653115..122653124,-#_ce75a09d48a99e391e10766b5d30688dp7@HAS2
4.76e-24FFCP PHASE1:Hg19::chr9:6256728..6256739,+#_ab4fcadb54edc92bf0106eb589c912b7p@chr9:6256728..6256739, +
4.76e-24FFCP PHASE2:Hg19::chr9:6256728..6256739,+#_ab4fcadb54edc92bf0106eb589c912b7p@chr9:6256728..6256739, +
6.41e-24FFCP PHASE2:Hg19::chr2:224839877..224839882,+#_fdc05fa4fe628d6cebf5877c56f56a37p@chr2:224839877..224839882, +
6.41e-24FFCP PHASE1:Hg19::chr2:224839877..224839882,+#_fdc05fa4fe628d6cebf5877c56f56a37p@chr2:224839877..224839882, +

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