Personal tools

CL:0002611: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{CL
{{CL
|id=CL:0002611
|alt_id=
|name=neuron of the dorsal spinal cord
|namespace=cell
|def="A CNS neuron of the dorsal spinal cord." [GOC:tfm]
|xref=
|is_a=CL:0000117
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-06T07:43:34Z
|def="A CNS neuron of the dorsal spinal cord." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002611
|is_a=CL:0000117
|is_obsolete=
|located_in=
|located_in=
|name=neuron of the dorsal spinal cord
|namespace=FANTOM
|obo_creation_date=2011-03-06T07:43:34Z
|part_of=UBERON:0002256
|part_of=UBERON:0002256
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:45, 12 September 2014

Name:neuron of the dorsal spinal cord
Namespace:FANTOM
Definition:"A CNS neuron of the dorsal spinal cord." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-06T07:43:34Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000117(CNS neuron (sensu Vertebrata))
part_of:UBERON:0002256(dorsal horn of spinal cord)



Children


derives from:FF:0000206 (mouse neuron of the dorsal spinal cord sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11643-122D5 (Mouse Neurons - dorsal spinal cord, donor3)
  • 11720-123D1 (Mouse Neurons - dorsal spinal cord, donor1)
  • 11738-123F1 (Mouse Neurons - dorsal spinal cord, donor2)

Mouse (Mus musculus)

  • 11643-122D5 (Mouse Neurons - dorsal spinal cord, donor3)
  • 11720-123D1 (Mouse Neurons - dorsal spinal cord, donor1)
  • 11738-123F1 (Mouse Neurons - dorsal spinal cord, donor2)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002611 (neuron of the dorsal spinal cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.66e-44FFCP PHASE2:Mm9::chr1:173090774..173090783,+#_537772c1a73899436bcc882dd39b1756p@chr1:173090774..173090783, +
1.66e-44FFCP PHASE1:Mm9::chr1:173090774..173090783,+#_537772c1a73899436bcc882dd39b1756p@chr1:173090774..173090783, +
1.42e-35FFCP PHASE2:Mm9::chr11:96608388..96608420,+#_d609d6afc91205b2f4b8498ade28ccd4p@chr11:96608388..96608420, +
1.42e-35FFCP PHASE1:Mm9::chr7:30089029..30089032,+#_d609d6afc91205b2f4b8498ade28ccd4p10@Dpf1
1.42e-35FFCP PHASE1:Mm9::chr11:96608388..96608420,+#_d609d6afc91205b2f4b8498ade28ccd4p@chr11:96608388..96608420, +
1.42e-35FFCP PHASE2:Mm9::chr7:30089029..30089032,+#_d609d6afc91205b2f4b8498ade28ccd4p10@Dpf1
2.13e-35FFCP PHASE1:Mm9::chr14:33413108..33413118,+#_ead8c9afdf210e3ce88e30360479ac63p3@Prrxl1
2.13e-35FFCP PHASE2:Mm9::chr18:84268738..84268777,-#_ead8c9afdf210e3ce88e30360479ac63p@chr18:84268738..84268777, -
2.13e-35FFCP PHASE2:Mm9::chr14:33413108..33413118,+#_ead8c9afdf210e3ce88e30360479ac63p3@Prrxl1
2.13e-35FFCP PHASE1:Mm9::chr18:84268738..84268777,-#_ead8c9afdf210e3ce88e30360479ac63p@chr18:84268738..84268777, -
4.75e-35FFCP PHASE1:Mm9::chr2:70053872..70053879,+#_e9387a5b55206fe2a5deddd4458c4600p@chr2:70053872..70053879, +
4.75e-35FFCP PHASE2:Mm9::chr2:70053872..70053879,+#_e9387a5b55206fe2a5deddd4458c4600p@chr2:70053872..70053879, +
3.41e-30FFCP PHASE2:Mm9::chr15:102821294..102821313,+#_ab7b6be30f230c388965b2bb8c3b9b82p@chr15:102821294..102821313, +
3.41e-30FFCP PHASE1:Mm9::chr15:102821294..102821313,+#_ab7b6be30f230c388965b2bb8c3b9b82p@chr15:102821294..102821313, +
6.69e-30FFCP PHASE2:Mm9::chr3:10183923..10183927,-#_542ec0c2b3721dfe3300238cb381a872p3@Pmp2
6.69e-30FFCP PHASE1:Mm9::chr4:137573261..137573269,+#_542ec0c2b3721dfe3300238cb381a872p@chr4:137573261..137573269, +
6.69e-30FFCP PHASE1:Mm9::chr3:10183923..10183927,-#_542ec0c2b3721dfe3300238cb381a872p3@Pmp2
6.69e-30FFCP PHASE2:Mm9::chr4:137573261..137573269,+#_542ec0c2b3721dfe3300238cb381a872p@chr4:137573261..137573269, +
2.55e-29FFCP PHASE2:Mm9::chr11:96143545..96143556,+#_c9477d253da12972856dfdceafe8ea33p6@Hoxb8
2.55e-29FFCP PHASE1:Mm9::chr11:96143545..96143556,+#_c9477d253da12972856dfdceafe8ea33p6@Hoxb8
2.38e-26FFCP PHASE1:Mm9::chr11:58996296..58996303,-#_41d7a8a006435a71ed4dbd537eed51e7p3@Gjc2
2.38e-26FFCP PHASE2:Mm9::chr11:58996296..58996303,-#_41d7a8a006435a71ed4dbd537eed51e7p3@Gjc2
3.19e-26FFCP PHASE2:Mm9::chr11:32036107..32036145,-#_1c94cd68faecfa27ddb882e8e0a17b80p@chr11:32036107..32036145, -
3.19e-26FFCP PHASE1:Mm9::chr11:32036107..32036145,-#_1c94cd68faecfa27ddb882e8e0a17b80p@chr11:32036107..32036145, -
4.27e-26FFCP PHASE2:Mm9::chr2:85036854..85036865,-#_ac581383ba17f819c4a50ab7a6bc2af2p1@Lrrc55
4.27e-26FFCP PHASE2:Mm9::chr17:35096058..35096095,-#_ac581383ba17f819c4a50ab7a6bc2af2p3@Hspa1b
4.27e-26FFCP PHASE1:Mm9::chr17:35096058..35096095,-#_ac581383ba17f819c4a50ab7a6bc2af2p3@Hspa1b
4.27e-26FFCP PHASE1:Mm9::chr2:85036854..85036865,-#_ac581383ba17f819c4a50ab7a6bc2af2p1@Lrrc55
5.7e-26FFCP PHASE1:Mm9::chr11:96160098..96160112,+#_de6d724182132a974cd489aa51f41999p8@Hoxb6
5.7e-26FFCP PHASE2:Mm9::chr11:96160098..96160112,+#_de6d724182132a974cd489aa51f41999p8@Hoxb6
7.61e-26FFCP PHASE2:Mm9::chr2:74529917..74529926,+#_a5c0f70ea8c795961c302fe3c7702b59p5@Hoxd10
7.61e-26FFCP PHASE1:Mm9::chr2:74529917..74529926,+#_a5c0f70ea8c795961c302fe3c7702b59p5@Hoxd10
1.02e-25FFCP PHASE1:Mm9::chr2:74530108..74530131,+#_6ec1f481470edf0c920c60ab3d6ecfd3p@chr2:74530108..74530131, +
1.02e-25FFCP PHASE2:Mm9::chr2:74530108..74530131,+#_6ec1f481470edf0c920c60ab3d6ecfd3p@chr2:74530108..74530131, +
1.8e-25FFCP PHASE1:Mm9::chr11:102750776..102750792,-#_cba59e07ca0e327f8150c6b24bfd3d28p@chr11:102750776..102750792, -
1.8e-25FFCP PHASE2:Mm9::chr11:102750776..102750792,-#_cba59e07ca0e327f8150c6b24bfd3d28p@chr11:102750776..102750792, -
3.06e-23FFCP PHASE1:Mm9::chr1:173088898..173088910,+#_8b169d5120c1c3c0d099c1c2489c755bp@chr1:173088898..173088910, +
3.06e-23FFCP PHASE2:Mm9::chr1:173088898..173088910,+#_8b169d5120c1c3c0d099c1c2489c755bp@chr1:173088898..173088910, +
3.06e-23FFCP PHASE1:Mm9::chr12:86865781..86865791,+#_8b169d5120c1c3c0d099c1c2489c755bp@chr12:86865781..86865791, +
3.06e-23FFCP PHASE2:Mm9::chr12:86865781..86865791,+#_8b169d5120c1c3c0d099c1c2489c755bp@chr12:86865781..86865791, +
3.95e-23FFCP PHASE2:Mm9::chr4:124373153..124373164,+#_8f41392fd6ae28bf345ed3a800af5206p@chr4:124373153..124373164, +
3.95e-23FFCP PHASE2:Mm9::chr19:46407266..46407281,-#_8f41392fd6ae28bf345ed3a800af5206p@chr19:46407266..46407281, -
3.95e-23FFCP PHASE1:Mm9::chr19:46407266..46407281,-#_8f41392fd6ae28bf345ed3a800af5206p@chr19:46407266..46407281, -
3.95e-23FFCP PHASE1:Mm9::chr4:124373153..124373164,+#_8f41392fd6ae28bf345ed3a800af5206p@chr4:124373153..124373164, +
5.75e-23FFCP PHASE1:Mm9::chr1:173090487..173090490,+#_7e11c8f75762b0e7c782adfeb944b36ep@chr1:173090487..173090490, +
5.75e-23FFCP PHASE2:Mm9::chr1:173090487..173090490,+#_7e11c8f75762b0e7c782adfeb944b36ep@chr1:173090487..173090490, +
6.57e-23FFCP PHASE2:Mm9::chr19:46407404..46407418,-#_0a5ac9058d525d6cf485ad5990b320a2p@chr19:46407404..46407418, -
6.57e-23FFCP PHASE1:Mm9::chr19:46407404..46407418,-#_0a5ac9058d525d6cf485ad5990b320a2p@chr19:46407404..46407418, -
9.5e-23FFCP PHASE1:Mm9::chr19:6498166..6498173,+#_37d6124a144269c4f950f21027c7852dp18@Nrxn2
9.5e-23FFCP PHASE2:Mm9::chr5:115995281..115995324,+#_37d6124a144269c4f950f21027c7852dp14@Pxn
9.5e-23FFCP PHASE1:Mm9::chr7:57165440..57165441,+#_37d6124a144269c4f950f21027c7852dp13@Slc6a5
9.5e-23FFCP PHASE2:Mm9::chr19:6498166..6498173,+#_37d6124a144269c4f950f21027c7852dp18@Nrxn2
9.5e-23FFCP PHASE2:Mm9::chr11:44456648..44456656,+#_37d6124a144269c4f950f21027c7852dp@chr11:44456648..44456656, +
9.5e-23FFCP PHASE1:Mm9::chr5:115995281..115995324,+#_37d6124a144269c4f950f21027c7852dp14@Pxn
9.5e-23FFCP PHASE2:Mm9::chr7:57165440..57165441,+#_37d6124a144269c4f950f21027c7852dp13@Slc6a5
9.5e-23FFCP PHASE1:Mm9::chr11:44456648..44456656,+#_37d6124a144269c4f950f21027c7852dp@chr11:44456648..44456656, +
1.09e-22FFCP PHASE2:Mm9::chr11:96132456..96132467,+#_175087154c5c40e4747867fff7ccde15p4@Hoxb9
1.09e-22FFCP PHASE1:Mm9::chr11:96132456..96132467,+#_175087154c5c40e4747867fff7ccde15p4@Hoxb9
1.8e-22FFCP PHASE2:Mm9::chr13:33175964..33175973,+#_184ef1a0dd0e0740a9b5b5997379b821p2@Serpinb1b
1.8e-22FFCP PHASE1:Mm9::chr13:33175964..33175973,+#_184ef1a0dd0e0740a9b5b5997379b821p2@Serpinb1b
2.32e-22FFCP PHASE1:Mm9::chr7:57165602..57165612,+#_dd272ba0a7bdedb4640786fb05db787fp6@Slc6a5
2.32e-22FFCP PHASE2:Mm9::chr7:57165602..57165612,+#_dd272ba0a7bdedb4640786fb05db787fp6@Slc6a5
2.97e-22FFCP PHASE2:Mm9::chr11:105898171..105898180,+#_3bfbc251a7ce2014178f0d624cd6149ep4@Dcaf7
2.97e-22FFCP PHASE1:Mm9::chr11:105898171..105898180,+#_3bfbc251a7ce2014178f0d624cd6149ep4@Dcaf7
5.12e-21FFCP PHASE1:Mm9::chr4:150371190..150371197,+#_8183990e00f0bf445df284f7ecc32483p1@Uts2
5.12e-21FFCP PHASE2:Mm9::chr4:150371190..150371197,+#_8183990e00f0bf445df284f7ecc32483p1@Uts2
6.43e-21FFCP PHASE2:Mm9::chr19:46407289..46407300,-#_df4db0de702d657f837bc56ed2f59204p@chr19:46407289..46407300, -
6.43e-21FFCP PHASE1:Mm9::chr19:46407289..46407300,-#_df4db0de702d657f837bc56ed2f59204p@chr19:46407289..46407300, -
1.27e-20FFCP PHASE2:Mm9::chr11:96146541..96146544,+#_fedee9e086b81f56bf5b51188aa828d4p@chr11:96146541..96146544, +
1.27e-20FFCP PHASE1:Mm9::chr11:96146541..96146544,+#_fedee9e086b81f56bf5b51188aa828d4p@chr11:96146541..96146544, +
1.59e-20FFCP PHASE2:Mm9::chr11:33103589..33103599,-#_10b00edc645b2924cae477aa3593b443p3@Tlx3
1.59e-20FFCP PHASE1:Mm9::chr11:33103589..33103599,-#_10b00edc645b2924cae477aa3593b443p3@Tlx3
2.0e-20FFCP PHASE2:Mm9::chr7:31700035..31700068,-#_14100eff7a08c5fa31ea1278341c8f5cp2@Mag
2.0e-20FFCP PHASE1:Mm9::chr7:31700035..31700068,-#_14100eff7a08c5fa31ea1278341c8f5cp2@Mag
6.1e-20FFCP PHASE1:Mm9::chr1:187242150..187242173,+#_dbde862d063c3cedb9e69b9f0b62f035p@chr1:187242150..187242173, +
6.1e-20FFCP PHASE1:Mm9::chr11:102749020..102749031,-#_dbde862d063c3cedb9e69b9f0b62f035p@chr11:102749020..102749031, -
6.1e-20FFCP PHASE2:Mm9::chr1:187242150..187242173,+#_dbde862d063c3cedb9e69b9f0b62f035p@chr1:187242150..187242173, +
6.1e-20FFCP PHASE2:Mm9::chr11:102749020..102749031,-#_dbde862d063c3cedb9e69b9f0b62f035p@chr11:102749020..102749031, -
7.62e-20FFCP PHASE2:Mm9::chr11:102758074..102758083,+#_bf9a16361b90f3c1d747d7e18eac81a9p@chr11:102758074..102758083, +
7.62e-20FFCP PHASE1:Mm9::chr11:102758074..102758083,+#_bf9a16361b90f3c1d747d7e18eac81a9p@chr11:102758074..102758083, +
3.08e-19FFCP PHASE1:Mm9::chr1:173089678..173089690,+#_8abbb72d38ccc6bdb055f2fee45a7047p3@Mpz
3.08e-19FFCP PHASE2:Mm9::chr1:173089678..173089690,+#_8abbb72d38ccc6bdb055f2fee45a7047p3@Mpz
3.79e-19FFCP PHASE1:Mm9::chr14:68704745..68704754,+#_e2347b5d38934b40ea8c1233b781953cp@chr14:68704745..68704754, +
3.79e-19FFCP PHASE2:Mm9::chr14:68704745..68704754,+#_e2347b5d38934b40ea8c1233b781953cp@chr14:68704745..68704754, +
3.79e-19FFCP PHASE2:Mm9::chrX:61750178..61750185,+#_e2347b5d38934b40ea8c1233b781953cp@chrX:61750178..61750185, +
3.79e-19FFCP PHASE1:Mm9::chrX:61750178..61750185,+#_e2347b5d38934b40ea8c1233b781953cp@chrX:61750178..61750185, +
5.72e-19FFCP PHASE2:Mm9::chr18:82753999..82754008,+#_7193b38db3a6c87dfe35221e284275d4p@chr18:82753999..82754008, +
5.72e-19FFCP PHASE1:Mm9::chr18:82753999..82754008,+#_7193b38db3a6c87dfe35221e284275d4p@chr18:82753999..82754008, +
7.02e-19FFCP PHASE2:Mm9::chr2:70399563..70399583,+#_abca524559e8d494b3c6bb0d7439965cp@chr2:70399563..70399583, +
7.02e-19FFCP PHASE2:Mm9::chr5:24032551..24032557,-#_abca524559e8d494b3c6bb0d7439965cp1@Gbx1
7.02e-19FFCP PHASE1:Mm9::chr10:80488930..80488949,-#_abca524559e8d494b3c6bb0d7439965cp@chr10:80488930..80488949, -
7.02e-19FFCP PHASE1:Mm9::chr2:70399563..70399583,+#_abca524559e8d494b3c6bb0d7439965cp@chr2:70399563..70399583, +
7.02e-19FFCP PHASE1:Mm9::chr5:24032551..24032557,-#_abca524559e8d494b3c6bb0d7439965cp1@Gbx1
7.02e-19FFCP PHASE2:Mm9::chr10:80488930..80488949,-#_abca524559e8d494b3c6bb0d7439965cp@chr10:80488930..80488949, -
1.06e-18FFCP PHASE2:Mm9::chr11:5050065..5050097,-#_c78822f97589d5c0a6e95a40cbf8c16dp4@Emid1
1.06e-18FFCP PHASE1:Mm9::chr11:5050065..5050097,-#_c78822f97589d5c0a6e95a40cbf8c16dp4@Emid1
1.3e-18FFCP PHASE2:Mm9::chr15:72378067..72378074,-#_c7a9f99baa69bfc5f40273ad88b14ba9p@chr15:72378067..72378074, -
1.3e-18FFCP PHASE1:Mm9::chr15:72378067..72378074,-#_c7a9f99baa69bfc5f40273ad88b14ba9p@chr15:72378067..72378074, -
1.59e-18FFCP PHASE1:Mm9::chr12:47821823..47821831,-#_3df8d18a660787c0706a93987c18f348p@chr12:47821823..47821831, -
1.59e-18FFCP PHASE2:Mm9::chr12:47821823..47821831,-#_3df8d18a660787c0706a93987c18f348p@chr12:47821823..47821831, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002611&oldid=3275552"