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{{CL
{{CL
|id=CL:0002622
|alt_id=
|name=prostate stromal cell
|namespace=cell
|def="A stromal cell of the prostate." [GOC:tfm]
|xref=BTO:0003972
|is_a=CL:0000499
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-14T02:11:10Z
|def="A stromal cell of the prostate." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002622
|is_a=CL:0000499
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=prostate stromal cell
|namespace=FANTOM
|obo_creation_date=2011-03-14T02:11:10Z
|part_of=UBERON:0002367
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0003972
}}
}}

Latest revision as of 16:46, 12 September 2014

Name:prostate stromal cell
Namespace:FANTOM
Definition:"A stromal cell of the prostate." [GOC:tfm]
Xrefs:
links:
BTO:0003972
Created by:tmeehan
Creation date:2011-03-14T02:11:10Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000499(stromal cell)
part_of:UBERON:0002367(prostate gland)



Children


derives from:FF:0000277 (human prostate stromal cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002622 (prostate stromal cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.24e-88FFCP PHASE2:Hg19::chr4:120437504..120437512,-#_524ff9a69c508bdca8ebf46218341d3dp@chr4:120437504..120437512, -
6.24e-88FFCP PHASE1:Hg19::chr4:120437504..120437512,-#_524ff9a69c508bdca8ebf46218341d3dp@chr4:120437504..120437512, -
7.51e-74FFCP PHASE1:Hg19::chr14:33088589..33088594,+#_642651903218edc2c54e35be0d8a23c5p@chr14:33088589..33088594, +
7.51e-74FFCP PHASE2:Hg19::chr14:33088589..33088594,+#_642651903218edc2c54e35be0d8a23c5p@chr14:33088589..33088594, +
1.71e-66FFCP PHASE2:Hg19::chr4:120546882..120546885,-#_a4401e2ce99e8e17dd55fec567032796p@chr4:120546882..120546885, -
1.71e-66FFCP PHASE1:Hg19::chr4:120546882..120546885,-#_a4401e2ce99e8e17dd55fec567032796p@chr4:120546882..120546885, -
1.05e-45FFCP PHASE1:Hg19::chr1:246147829..246147864,-#_9cf7e44ffe981d649ea4bc918bc95cc5p@chr1:246147829..246147864, -
1.05e-45FFCP PHASE2:Hg19::chr1:246147829..246147864,-#_9cf7e44ffe981d649ea4bc918bc95cc5p@chr1:246147829..246147864, -
1.49e-38FFCP PHASE1:Hg19::chr3:123518853..123518862,-#_ab83cbed65a5aee3ec8c0f6f8435ddc3p48@MYLK
1.49e-38FFCP PHASE2:Hg19::chr3:123518853..123518862,-#_ab83cbed65a5aee3ec8c0f6f8435ddc3p48@MYLK
1.8e-38FFCP PHASE2:Hg19::chr4:120549931..120549938,-#_ac4dcdb09243f8557851338bd0bc5cfap21@PDE5A
1.8e-38FFCP PHASE1:Hg19::chr4:120549931..120549938,-#_ac4dcdb09243f8557851338bd0bc5cfap21@PDE5A
1.11e-35FFCP PHASE2:Hg19::chr7:136759451..136759469,+#_8daa286727bef2eb00c4ca551f6a2ffep@chr7:136759451..136759469, +
1.11e-35FFCP PHASE1:Hg19::chr7:136759451..136759469,+#_8daa286727bef2eb00c4ca551f6a2ffep@chr7:136759451..136759469, +
1.47e-30FFCP PHASE1:Hg19::chr12:52473502..52473510,+#_3da3629b8e19260555f73235acd7a8b3p2@ENST00000546390, p2@uc009zme.1
1.47e-30FFCP PHASE2:Hg19::chr12:52473502..52473510,+#_3da3629b8e19260555f73235acd7a8b3p2@ENST00000546390, p2@uc009zme.1
1.98e-30FFCP PHASE1:Hg19::chr4:177190139..177190150,-#_9e28fe3520da3a1bf0bc89fb7cf9a115p6@ASB5
1.98e-30FFCP PHASE2:Hg19::chr4:177190139..177190150,-#_9e28fe3520da3a1bf0bc89fb7cf9a115p6@ASB5
1.06e-27FFCP PHASE1:Hg19::chr2:238092965..238092980,-#_904cbff250721946258ab51dfb30abc4p@chr2:238092965..238092980, -
1.06e-27FFCP PHASE2:Hg19::chr2:238092965..238092980,-#_904cbff250721946258ab51dfb30abc4p@chr2:238092965..238092980, -
7.93e-25FFCP PHASE2:Hg19::chr7:81319728..81319744,-#_445d3922b8e8290b43841f12936e39a2p@chr7:81319728..81319744, -
7.93e-25FFCP PHASE1:Hg19::chr7:81319728..81319744,-#_445d3922b8e8290b43841f12936e39a2p@chr7:81319728..81319744, -
4.97e-24FFCP PHASE1:Hg19::chr4:120549834..120549846,-#_5f6b88e37bd09ae6c19e78f320ec15fbp15@PDE5A
4.97e-24FFCP PHASE2:Hg19::chr4:120549834..120549846,-#_5f6b88e37bd09ae6c19e78f320ec15fbp15@PDE5A
2.46e-23FFCP PHASE2:Hg19::chr3:123518704..123518728,-#_1d66563ba29ddde72efdd9fe3cdacb34p28@MYLK
2.46e-23FFCP PHASE1:Hg19::chr3:123518704..123518728,-#_1d66563ba29ddde72efdd9fe3cdacb34p28@MYLK
3.27e-23FFCP PHASE1:Hg19::chr2:203560192..203560201,+#_33ca6228a574acb15a4dfc377fdc004ap11@FAM117B
3.27e-23FFCP PHASE2:Hg19::chr2:203560192..203560201,+#_33ca6228a574acb15a4dfc377fdc004ap11@FAM117B
4.09e-23FFCP PHASE1:Hg19::chr1:118363660..118363674,-#_b583b6852862645d04e7611b549c2de7p@chr1:118363660..118363674, -
4.09e-23FFCP PHASE2:Hg19::chr1:118363660..118363674,-#_b583b6852862645d04e7611b549c2de7p@chr1:118363660..118363674, -
5.63e-23FFCP PHASE2:Hg19::chr4:1165260..1165276,-#_b9f5a42233795c46ad1b2518047cfef0p17@SPON2
5.63e-23FFCP PHASE1:Hg19::chr4:1165260..1165276,-#_b9f5a42233795c46ad1b2518047cfef0p17@SPON2
8.19e-23FFCP PHASE2:Hg19::chr21:46767473..46767491,+#_88b69e0428a99eeec144d608f9f1aa8ep@chr21:46767473..46767491, +
8.19e-23FFCP PHASE1:Hg19::chr21:46767473..46767491,+#_88b69e0428a99eeec144d608f9f1aa8ep@chr21:46767473..46767491, +
1.72e-22FFCP PHASE2:Hg19::chr8:119945232..119945244,-#_8f5f6b40ee5d23d4329283e9332cdde1p8@TNFRSF11B
1.72e-22FFCP PHASE1:Hg19::chr8:119945232..119945244,-#_8f5f6b40ee5d23d4329283e9332cdde1p8@TNFRSF11B
8.23e-22FFCP PHASE2:Hg19::chr3:123518925..123518939,-#_bb6c6de7e482dc129a6eaa391d816e36p29@MYLK
8.23e-22FFCP PHASE1:Hg19::chr3:123518925..123518939,-#_bb6c6de7e482dc129a6eaa391d816e36p29@MYLK
2.41e-21FFCP PHASE1:Hg19::chr4:120548828..120548836,-#_55f2a522030ceadd76ad026e2cff1ed3p17@PDE5A
2.41e-21FFCP PHASE2:Hg19::chr4:120548828..120548836,-#_55f2a522030ceadd76ad026e2cff1ed3p17@PDE5A
5.43e-21FFCP PHASE2:Hg19::chr8:120079417..120079436,+#_fa52ed84ae8dc1d46f5986552486a064p2@COLEC10
5.43e-21FFCP PHASE1:Hg19::chr8:120079417..120079436,+#_fa52ed84ae8dc1d46f5986552486a064p2@COLEC10
8.16e-21FFCP PHASE1:Hg19::chr18:20275091..20275099,+#_36fdc0ef964a925b3b8617060392454dp@chr18:20275091..20275099, +
8.16e-21FFCP PHASE2:Hg19::chr18:20275091..20275099,+#_36fdc0ef964a925b3b8617060392454dp@chr18:20275091..20275099, +
3.12e-20FFCP PHASE1:Hg19::chr3:170150547..170150552,+#_ae0d1326dbe731c3a1f5af29413789cfp@chr3:170150547..170150552, +
3.12e-20FFCP PHASE2:Hg19::chr3:170150547..170150552,+#_ae0d1326dbe731c3a1f5af29413789cfp@chr3:170150547..170150552, +
6.5e-20FFCP PHASE1:Hg19::chr12:89842992..89843005,-#_034dcc0fe8371cff74e0ff91ac17da32p@chr12:89842992..89843005, -
6.5e-20FFCP PHASE2:Hg19::chr12:89842992..89843005,-#_034dcc0fe8371cff74e0ff91ac17da32p@chr12:89842992..89843005, -
7.16e-20FFCP PHASE2:Hg19::chr14:52066745..52066774,-#_b94e8396f522e6d1ea5b5beafb94987fp2@ENST00000556617
7.16e-20FFCP PHASE1:Hg19::chr14:52066745..52066774,-#_b94e8396f522e6d1ea5b5beafb94987fp2@ENST00000556617
8.96e-20FFCP PHASE2:Hg19::chr9:101832450..101832468,+#_f2109dafe3ba8e2e15021b06d61ed454p@chr9:101832450..101832468, +
8.96e-20FFCP PHASE1:Hg19::chr9:101832450..101832468,+#_f2109dafe3ba8e2e15021b06d61ed454p@chr9:101832450..101832468, +
5.54e-19FFCP PHASE1:Hg19::chr14:54418733..54418774,-#_f8544b8b13646f515b65b048a69da2b2p7@BMP4
5.54e-19FFCP PHASE2:Hg19::chr14:54418733..54418774,-#_f8544b8b13646f515b65b048a69da2b2p7@BMP4
6.63e-19FFCP PHASE2:Hg19::chr2:114300263..114300269,-#_8d43b76a95ce45d45ca76b526b47098fp1@ENST00000416758
6.63e-19FFCP PHASE1:Hg19::chr2:114300263..114300269,-#_8d43b76a95ce45d45ca76b526b47098fp1@ENST00000416758
1.04e-18FFCP PHASE1:Hg19::chr3:158390171..158390180,-#_e232701eeab504681392eff4bd8607bfp3@LXN
1.04e-18FFCP PHASE1:Hg19::chr1:21025019..21025038,-#_e232701eeab504681392eff4bd8607bfp8@KIF17
1.04e-18FFCP PHASE2:Hg19::chr3:158390171..158390180,-#_e232701eeab504681392eff4bd8607bfp3@LXN
1.04e-18FFCP PHASE2:Hg19::chr1:21025019..21025038,-#_e232701eeab504681392eff4bd8607bfp8@KIF17
1.36e-18FFCP PHASE1:Hg19::chr16:86547373..86547391,+#_8450b10fb1476d3cb0f6e46a109addacp@chr16:86547373..86547391, +
1.36e-18FFCP PHASE2:Hg19::chr16:86547373..86547391,+#_8450b10fb1476d3cb0f6e46a109addacp@chr16:86547373..86547391, +
8.0e-18FFCP PHASE1:Hg19::chr6:134210772..134210782,+#_5d2d14b2573dadc1945cc33ec59752e9p8@TCF21
8.0e-18FFCP PHASE2:Hg19::chr6:134210772..134210782,+#_5d2d14b2573dadc1945cc33ec59752e9p8@TCF21
1.08e-17FFCP PHASE1:Hg19::chr16:86229916..86229943,+#_d10922f7a147c1fa477b07a4f07b1577p@chr16:86229916..86229943, +
1.08e-17FFCP PHASE2:Hg19::chr16:86229916..86229943,+#_d10922f7a147c1fa477b07a4f07b1577p@chr16:86229916..86229943, +
1.6e-17FFCP PHASE2:Hg19::chr9:101706279..101706284,+#_cc0669b93e9be0db6ddb085794f12f90p13@COL15A1
1.6e-17FFCP PHASE1:Hg19::chr9:101706279..101706284,+#_cc0669b93e9be0db6ddb085794f12f90p13@COL15A1
1.7e-17FFCP PHASE1:Hg19::chr6:64517213..64517228,+#_de7829c5c24c1dac9329ed509d843008p@chr6:64517213..64517228, +
1.7e-17FFCP PHASE2:Hg19::chr6:64517213..64517228,+#_de7829c5c24c1dac9329ed509d843008p@chr6:64517213..64517228, +
1.79e-17FFCP PHASE1:Hg19::chr4:1165106..1165131,-#_fdd09674d1b429e8fff9a41336665590p15@SPON2
1.79e-17FFCP PHASE2:Hg19::chr4:1165106..1165131,-#_fdd09674d1b429e8fff9a41336665590p15@SPON2
3.03e-17FFCP PHASE2:Hg19::chr8:120079478..120079499,+#_324d4333e3bc8365b737a4ee4451c45cp1@COLEC10
3.03e-17FFCP PHASE1:Hg19::chr8:120079478..120079499,+#_324d4333e3bc8365b737a4ee4451c45cp1@COLEC10
3.48e-17FFCP PHASE2:Hg19::chr3:123518900..123518913,-#_3c619fa4ce5faea50b041a4161de7dcbp18@MYLK
3.48e-17FFCP PHASE1:Hg19::chr3:123518900..123518913,-#_3c619fa4ce5faea50b041a4161de7dcbp18@MYLK
5.22e-17FFCP PHASE1:Hg19::chr10:28033614..28033628,-#_c0c4aa06305088d455bc8f6bb078f387p@chr10:28033614..28033628, -
5.22e-17FFCP PHASE2:Hg19::chr10:28033614..28033628,-#_c0c4aa06305088d455bc8f6bb078f387p@chr10:28033614..28033628, -
1.23e-16FFCP PHASE1:Hg19::chr3:123458560..123458569,-#_e7706e2c116b076605e7e89c10afe401p@chr3:123458560..123458569, -
1.23e-16FFCP PHASE2:Hg19::chr3:123458560..123458569,-#_e7706e2c116b076605e7e89c10afe401p@chr3:123458560..123458569, -
1.97e-16FFCP PHASE1:Hg19::chr3:123519062..123519090,-#_9acfe27e135bacab650e5b70cb90d7b4p14@MYLK
1.97e-16FFCP PHASE2:Hg19::chr3:123519062..123519090,-#_9acfe27e135bacab650e5b70cb90d7b4p14@MYLK
2.26e-16FFCP PHASE2:Hg19::chr1:21766691..21766715,+#_a29e7ef1c8506af26f1e933dce24a0cep3@NBPF3
2.26e-16FFCP PHASE1:Hg19::chr1:21766691..21766715,+#_a29e7ef1c8506af26f1e933dce24a0cep3@NBPF3
2.82e-16FFCP PHASE1:Hg19::chr16:86256667..86256687,-#_2dc479150bd42ce8cfd09dede3516d76p@chr16:86256667..86256687, -
2.82e-16FFCP PHASE2:Hg19::chr16:86256667..86256687,-#_2dc479150bd42ce8cfd09dede3516d76p@chr16:86256667..86256687, -
3.98e-16FFCP PHASE1:Hg19::chr4:1164305..1164316,-#_f72073ffe8b7a8682d607ef298f9285cp@chr4:1164305..1164316, -
3.98e-16FFCP PHASE2:Hg19::chr4:1164305..1164316,-#_f72073ffe8b7a8682d607ef298f9285cp@chr4:1164305..1164316, -
4.02e-16FFCP PHASE1:Hg19::chr4:1165755..1165774,-#_f986ea15bbd99bda362fa72991f7ab64p12@SPON2
4.02e-16FFCP PHASE2:Hg19::chr4:1165755..1165774,-#_f986ea15bbd99bda362fa72991f7ab64p12@SPON2
5.17e-16FFCP PHASE1:Hg19::chr2:28524175..28524215,+#_9ff41d1993a9bdd20d2a0615aa6dfbafp@chr2:28524175..28524215, +
5.17e-16FFCP PHASE2:Hg19::chr2:28524175..28524215,+#_9ff41d1993a9bdd20d2a0615aa6dfbafp@chr2:28524175..28524215, +
6.63e-16FFCP PHASE1:Hg19::chr16:86542381..86542392,-#_97afa61d3f89ad6de04e635137212c6bp1@ENST00000499071
6.63e-16FFCP PHASE2:Hg19::chr16:86542381..86542392,-#_97afa61d3f89ad6de04e635137212c6bp1@ENST00000499071
1.22e-15FFCP PHASE2:Hg19::chr7:136553573..136553582,+#_552226e6a136a889cf992b9bd665dd47p6@CHRM2
1.22e-15FFCP PHASE1:Hg19::chr7:136553573..136553582,+#_552226e6a136a889cf992b9bd665dd47p6@CHRM2
2.63e-15FFCP PHASE2:Hg19::chr7:79082186..79082203,+#_c5cb828e67d0d03e7c930f9adeff5505p8@MAGI2-AS3
2.63e-15FFCP PHASE1:Hg19::chr7:79082186..79082203,+#_c5cb828e67d0d03e7c930f9adeff5505p8@MAGI2-AS3
3.11e-15FFCP PHASE2:Hg19::chr3:123518799..123518836,-#_9d3aafd1913506bc1ed62eeb508c6a8dp16@MYLK
3.11e-15FFCP PHASE1:Hg19::chr3:123518799..123518836,-#_9d3aafd1913506bc1ed62eeb508c6a8dp16@MYLK

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