DOID:0080000: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{DOID | {{DOID | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=DOID:0080000 | |||
|is_a=DOID:17 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=muscular disease | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | |property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref= | |||
}} | }} | ||
Latest revision as of 16:48, 12 September 2014
| Name: | muscular disease |
|---|---|
| Namespace: | FANTOM |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:17(musculoskeletal system disease) |
|---|
Children
| is a: | DOID:66 (muscle tissue disease) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 11556-120C8 (Fibroblast - skin dystrophia myotonica, donor1)
- 11557-120C9 (Fibroblast - skin dystrophia myotonica, donor2)
- 11560-120D3 (Fibroblast - skin dystrophia myotonica, donor3)
- 14306-155C4
- 14307-155C5
- 14308-155C6 (Fibroblast - skin dystrophia myotonica, donor3 (nuclear fraction))
- 14327-155E7
- 14328-155E8
- 14329-155E9 (Fibroblast - skin dystrophia myotonica, donor1 (nuclear fraction))
Mouse (Mus musculus)
- 11556-120C8 (Fibroblast - skin dystrophia myotonica, donor1)
- 11557-120C9 (Fibroblast - skin dystrophia myotonica, donor2)
- 11560-120D3 (Fibroblast - skin dystrophia myotonica, donor3)
- 14306-155C4
- 14307-155C5
- 14308-155C6 (Fibroblast - skin dystrophia myotonica, donor3 (nuclear fraction))
- 14327-155E7
- 14328-155E8
- 14329-155E9 (Fibroblast - skin dystrophia myotonica, donor1 (nuclear fraction))
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:0080000 (muscular disease), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.5e-156 | FFCP PHASE2:Hg19::chr15:33180439..33180446,-#_1274739c967b510105e7d26312a4bfa0 | p@chr15:33180439..33180446, - |
| 1.5e-156 | FFCP PHASE1:Hg19::chr15:33180439..33180446,-#_1274739c967b510105e7d26312a4bfa0 | p@chr15:33180439..33180446, - |
| 6.23e-66 | FFCP PHASE1:Hg19::chr13:24044226..24044237,+#_873b9a1580aebfd2367a941bb0667821 | p1@LINC00327 |
| 6.23e-66 | FFCP PHASE2:Hg19::chr13:24044226..24044237,+#_873b9a1580aebfd2367a941bb0667821 | p1@LINC00327 |
| 3.99e-52 | FFCP PHASE1:Hg19::chr4:184271970..184271992,-#_63b60e5c1ccc94d5e01f32ab119c779e | p@chr4:184271970..184271992, - |
| 3.99e-52 | FFCP PHASE2:Hg19::chr4:184271970..184271992,-#_63b60e5c1ccc94d5e01f32ab119c779e | p@chr4:184271970..184271992, - |
| 3.24e-51 | FFCP PHASE2:Hg19::chr15:33180622..33180633,-#_9f84d1cd876bfd215b264370b1d010fa | p13@FMN1 |
| 3.24e-51 | FFCP PHASE1:Hg19::chr15:33180622..33180633,-#_9f84d1cd876bfd215b264370b1d010fa | p13@FMN1 |
| 8.65e-49 | FFCP PHASE1:Hg19::chr13:24044200..24044211,+#_018f969ceace8702b8f4bbd48ca1b2ed | p2@LINC00327 |
| 8.65e-49 | FFCP PHASE2:Hg19::chr13:24044200..24044211,+#_018f969ceace8702b8f4bbd48ca1b2ed | p2@LINC00327 |
| 8.65e-49 | FFCP PHASE2:Hg19::chr1:198636401..198636419,-#_018f969ceace8702b8f4bbd48ca1b2ed | p3@ENST00000413577 |
| 8.65e-49 | FFCP PHASE1:Hg19::chr1:198636401..198636419,-#_018f969ceace8702b8f4bbd48ca1b2ed | p3@ENST00000413577 |
| 8.92e-46 | FFCP PHASE2:Hg19::chr1:197886646..197886657,+#_08c49af8549803d139619a39442b04b4 | p5@LHX9 |
| 8.92e-46 | FFCP PHASE1:Hg19::chr1:197886646..197886657,+#_08c49af8549803d139619a39442b04b4 | p5@LHX9 |
| 3.84e-42 | FFCP PHASE1:Hg19::chr22:48819856..48819861,+#_d0202eed341febee7818d5f23eecdec9 | p@chr22:48819856..48819861, + |
| 3.84e-42 | FFCP PHASE2:Hg19::chr22:48819856..48819861,+#_d0202eed341febee7818d5f23eecdec9 | p@chr22:48819856..48819861, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:55505693..55505698,+#_a8740876115c8aacc024272723aab49e | p7@PCSK9 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:55505693..55505698,+#_a8740876115c8aacc024272723aab49e | p7@PCSK9 |
| 2.71e-40 | FFCP PHASE1:Hg19::chr2:100323985..100323997,-#_6d543cdc478bcc21747ad270785f61d3 | p@chr2:100323985..100323997, - |
| 2.71e-40 | FFCP PHASE2:Hg19::chr2:100323985..100323997,-#_6d543cdc478bcc21747ad270785f61d3 | p@chr2:100323985..100323997, - |
| 5.85e-40 | FFCP PHASE2:Hg19::chr15:39571769..39571781,-#_3b0b9905f0405fad18960fd0be9dc15c | p@chr15:39571769..39571781, - |
| 5.85e-40 | FFCP PHASE1:Hg19::chr15:39571769..39571781,-#_3b0b9905f0405fad18960fd0be9dc15c | p@chr15:39571769..39571781, - |
| 2.05e-39 | FFCP PHASE1:Hg19::chr15:33180498..33180522,-#_c3b076b3a430b8020ae466d844bfc460 | p4@FMN1 |
| 2.05e-39 | FFCP PHASE2:Hg19::chr15:33180498..33180522,-#_c3b076b3a430b8020ae466d844bfc460 | p4@FMN1 |
| 7.88e-38 | FFCP PHASE2:Hg19::chrX:3102846..3102872,+#_038414e54d377b98b8eddb8683916496 | p@chrX:3102846..3102872, + |
| 7.88e-38 | FFCP PHASE1:Hg19::chrX:3102846..3102872,+#_038414e54d377b98b8eddb8683916496 | p@chrX:3102846..3102872, + |
| 8.51e-37 | FFCP PHASE2:Hg19::chr1:198636258..198636278,-#_2734e007d056b0c57332a9f0c12f2a10 | p1@ENST00000413577 |
| 8.51e-37 | FFCP PHASE1:Hg19::chr1:198636258..198636278,-#_2734e007d056b0c57332a9f0c12f2a10 | p1@ENST00000413577 |
| 2.0e-36 | FFCP PHASE1:Hg19::chr2:100323966..100323983,-#_c0ddfae9ff8b6f63287422d1745a9b13 | p@chr2:100323966..100323983, - |
| 2.0e-36 | FFCP PHASE2:Hg19::chr2:100323966..100323983,-#_c0ddfae9ff8b6f63287422d1745a9b13 | p@chr2:100323966..100323983, - |
| 1.82e-34 | FFCP PHASE2:Hg19::chr1:197886421..197886432,+#_bdf8a05f3d7aed7670297c677eb7bded | p2@LHX9 |
| 1.82e-34 | FFCP PHASE1:Hg19::chr1:197886421..197886432,+#_bdf8a05f3d7aed7670297c677eb7bded | p2@LHX9 |
| 3.86e-33 | FFCP PHASE2:Hg19::chr1:197889151..197889159,+#_fdc27412dd4e17951925c7d175d8a4a7 | p@chr1:197889151..197889159, + |
| 3.86e-33 | FFCP PHASE1:Hg19::chr1:197889151..197889159,+#_fdc27412dd4e17951925c7d175d8a4a7 | p@chr1:197889151..197889159, + |
| 4.23e-33 | FFCP PHASE1:Hg19::chr5:167181769..167181798,+#_0f065a26830d53b78db536ac2a9be939 | p17@ODZ2 |
| 4.23e-33 | FFCP PHASE2:Hg19::chr5:167181769..167181798,+#_0f065a26830d53b78db536ac2a9be939 | p17@ODZ2 |
| 4.31e-33 | FFCP PHASE2:Hg19::chr1:197886772..197886790,+#_62aa236decc548de18208727d5274a68 | p4@LHX9 |
| 4.31e-33 | FFCP PHASE1:Hg19::chr1:197886772..197886790,+#_62aa236decc548de18208727d5274a68 | p4@LHX9 |
| 6.67e-33 | FFCP PHASE2:Hg19::chr1:197886617..197886628,+#_80c74d212ada30f4d08b24c3714ada52 | p8@LHX9 |
| 6.67e-33 | FFCP PHASE1:Hg19::chr1:197886617..197886628,+#_80c74d212ada30f4d08b24c3714ada52 | p8@LHX9 |
| 9.31e-33 | FFCP PHASE2:Hg19::chr14:32963433..32963487,+#_fcc5780256394c977b21da792341c17a | p4@AKAP6 |
| 9.31e-33 | FFCP PHASE1:Hg19::chr14:32963433..32963487,+#_fcc5780256394c977b21da792341c17a | p4@AKAP6 |
| 9.4e-33 | FFCP PHASE2:Hg19::chr8:23564380..23564391,+#_8994e51e1278f05c7c0924df3d7ac856 | p1@ENST00000523874 |
| 9.4e-33 | FFCP PHASE1:Hg19::chr8:23564380..23564391,+#_8994e51e1278f05c7c0924df3d7ac856 | p1@ENST00000523874 |
| 1.7e-32 | FFCP PHASE1:Hg19::chr20:52570906..52570909,-#_1ad11526883bb57282d2b220a37826e4 | p@chr20:52570906..52570909, - |
| 1.7e-32 | FFCP PHASE2:Hg19::chr20:52570906..52570909,-#_1ad11526883bb57282d2b220a37826e4 | p@chr20:52570906..52570909, - |
| 1.23e-30 | FFCP PHASE2:Hg19::chr1:197886665..197886732,+#_590f61d7343d973dbbb20dd9fc43defe | p3@LHX9 |
| 1.23e-30 | FFCP PHASE1:Hg19::chr1:197886665..197886732,+#_590f61d7343d973dbbb20dd9fc43defe | p3@LHX9 |
| 1.42e-30 | FFCP PHASE1:Hg19::chr15:33180558..33180570,-#_48b8351a953f66af191323451f42cd39 | p9@FMN1 |
| 1.42e-30 | FFCP PHASE2:Hg19::chr15:33180558..33180570,-#_48b8351a953f66af191323451f42cd39 | p9@FMN1 |
| 6.36e-30 | FFCP PHASE1:Hg19::chr2:239778648..239778664,+#_6bc06bc94ad43a1f658c8d07a425c80a | p@chr2:239778648..239778664, + |
| 6.36e-30 | FFCP PHASE2:Hg19::chr2:239778648..239778664,+#_6bc06bc94ad43a1f658c8d07a425c80a | p@chr2:239778648..239778664, + |
| 7.23e-30 | FFCP PHASE2:Hg19::chr15:39880996..39881011,+#_3f94c99a1d6974e3520937e8cf381c6c | p41@THBS1 |
| 7.23e-30 | FFCP PHASE1:Hg19::chr15:39880996..39881011,+#_3f94c99a1d6974e3520937e8cf381c6c | p41@THBS1 |
| 3.13e-29 | FFCP PHASE2:Hg19::chr2:158114405..158114413,+#_6c415efa2fcb570e5609df05dc11445a | p11@GALNT5 |
| 3.13e-29 | FFCP PHASE1:Hg19::chr2:158114405..158114413,+#_6c415efa2fcb570e5609df05dc11445a | p11@GALNT5 |
| 6.34e-29 | FFCP PHASE1:Hg19::chr12:114845970..114846000,+#_15c7c0c4ba342c986e2a598fb0e9b844 | p1@LOC255480 |
| 6.34e-29 | FFCP PHASE2:Hg19::chr12:114845970..114846000,+#_15c7c0c4ba342c986e2a598fb0e9b844 | p1@LOC255480 |
| 2.45e-28 | FFCP PHASE2:Hg19::chr6:113697548..113697566,-#_fc521a6031e352ce5aa81e42f4910e85 | p@chr6:113697548..113697566, - |
| 2.45e-28 | FFCP PHASE1:Hg19::chr6:113697548..113697566,-#_fc521a6031e352ce5aa81e42f4910e85 | p@chr6:113697548..113697566, - |
| 6.02e-28 | FFCP PHASE1:Hg19::chr15:39593792..39593816,-#_0f243ba911fea821fe4c5e25d811d86f | p@chr15:39593792..39593816, - |
| 6.02e-28 | FFCP PHASE2:Hg19::chr15:39593792..39593816,-#_0f243ba911fea821fe4c5e25d811d86f | p@chr15:39593792..39593816, - |
| 2.04e-27 | FFCP PHASE1:Hg19::chr12:10084960..10084974,-#_2e24b65733e7eeeecf884b78035fbc16 | p1@CLEC2A |
| 2.04e-27 | FFCP PHASE2:Hg19::chr12:10084960..10084974,-#_2e24b65733e7eeeecf884b78035fbc16 | p1@CLEC2A |
| 2.08e-27 | FFCP PHASE1:Hg19::chr7:131195751..131195762,+#_a6cb4137668f4e62f2886666696c57de | p@chr7:131195751..131195762, + |
| 2.08e-27 | FFCP PHASE2:Hg19::chr7:131195751..131195762,+#_a6cb4137668f4e62f2886666696c57de | p@chr7:131195751..131195762, + |
| 2.72e-27 | FFCP PHASE2:Hg19::chr10:129815627..129815630,+#_af703613158f7b2078c496596eee7857 | p@chr10:129815627..129815630, + |
| 2.72e-27 | FFCP PHASE1:Hg19::chr10:129815627..129815630,+#_af703613158f7b2078c496596eee7857 | p@chr10:129815627..129815630, + |
| 3.55e-27 | FFCP PHASE1:Hg19::chr12:91539677..91539688,-#_eb8e104fcaff5175f11bdacecbf50a3d | p@chr12:91539677..91539688, - |
| 3.55e-27 | FFCP PHASE2:Hg19::chr12:91539677..91539688,-#_eb8e104fcaff5175f11bdacecbf50a3d | p@chr12:91539677..91539688, - |
| 6.88e-27 | FFCP PHASE1:Hg19::chr8:23564065..23564087,-#_f9b512ee0a782d89b637ab028ab192cf | p1@NKX2-6 |
| 6.88e-27 | FFCP PHASE2:Hg19::chr8:23564065..23564087,-#_f9b512ee0a782d89b637ab028ab192cf | p1@NKX2-6 |
| 1.64e-26 | FFCP PHASE2:Hg19::chr9:125231389..125231402,+#_f346664a86944607aeb1709688c345f0 | p2@OR1J2 |
| 1.64e-26 | FFCP PHASE1:Hg19::chr9:125231389..125231402,+#_f346664a86944607aeb1709688c345f0 | p2@OR1J2 |
| 3.62e-26 | FFCP PHASE1:Hg19::chr9:110047130..110047161,+#_63c55685ea4312388c42b28c882f1894 | p9@RAD23B |
| 3.62e-26 | FFCP PHASE2:Hg19::chr9:110047130..110047161,+#_63c55685ea4312388c42b28c882f1894 | p9@RAD23B |
| 2.55e-25 | FFCP PHASE2:Hg19::chr2:238187300..238187323,-#_0e3123e36009b4170b89c2c2203f4021 | p@chr2:238187300..238187323, - |
| 2.55e-25 | FFCP PHASE1:Hg19::chr2:238187300..238187323,-#_0e3123e36009b4170b89c2c2203f4021 | p@chr2:238187300..238187323, - |
| 5.73e-25 | FFCP PHASE1:Hg19::chr19:43689230..43689259,+#_f9206f9124921b7f9a0ea8014e7c702e | p@chr19:43689230..43689259, + |
| 5.73e-25 | FFCP PHASE2:Hg19::chr19:43689230..43689259,+#_f9206f9124921b7f9a0ea8014e7c702e | p@chr19:43689230..43689259, + |
| 6.31e-25 | FFCP PHASE2:Hg19::chr7:45952643..45952654,-#_441610f81f047be3cd06db8bda632cce | p22@IGFBP3 |
| 6.31e-25 | FFCP PHASE1:Hg19::chr7:45952643..45952654,-#_441610f81f047be3cd06db8bda632cce | p22@IGFBP3 |
| 7.53e-25 | FFCP PHASE2:Hg19::chr5:167181899..167181909,+#_b63967942d3ce613c056299d87c482c4 | p14@ODZ2 |
| 7.53e-25 | FFCP PHASE1:Hg19::chr5:167181899..167181909,+#_b63967942d3ce613c056299d87c482c4 | p14@ODZ2 |
| 1.06e-24 | FFCP PHASE1:Hg19::chr6:75914944..75914952,-#_a5cbbed529e5dbc6364eadd5c9c7c923 | p@chr6:75914944..75914952, - |
| 1.06e-24 | FFCP PHASE2:Hg19::chr6:75914944..75914952,-#_a5cbbed529e5dbc6364eadd5c9c7c923 | p@chr6:75914944..75914952, - |
| 2.95e-24 | FFCP PHASE1:Hg19::chr5:167148342..167148357,+#_ef3d200b84bd94e017c1e31aa53de313 | p1@ENST00000517346 |
| 2.95e-24 | FFCP PHASE2:Hg19::chr5:167148342..167148357,+#_ef3d200b84bd94e017c1e31aa53de313 | p1@ENST00000517346 |
| 3.45e-24 | FFCP PHASE1:Hg19::chr6:75886595..75886610,-#_8c937ec2c4e90532e7bcddb654a9b21e | p@chr6:75886595..75886610, - |
| 3.45e-24 | FFCP PHASE2:Hg19::chr6:75886595..75886610,-#_8c937ec2c4e90532e7bcddb654a9b21e | p@chr6:75886595..75886610, - |
| 5.36e-24 | FFCP PHASE2:Hg19::chr3:58021410..58021424,+#_85c0fc37e605f933cb19770a663b19ec | p@chr3:58021410..58021424, + |
| 5.36e-24 | FFCP PHASE1:Hg19::chr3:58021410..58021424,+#_85c0fc37e605f933cb19770a663b19ec | p@chr3:58021410..58021424, + |
| 8.78e-24 | FFCP PHASE1:Hg19::chr12:88813132..88813143,-#_34a97def5c95d2744e02e4f45c2d6774 | p@chr12:88813132..88813143, - |
| 8.78e-24 | FFCP PHASE2:Hg19::chr12:88813132..88813143,-#_34a97def5c95d2744e02e4f45c2d6774 | p@chr12:88813132..88813143, - |
| 1.02e-23 | FFCP PHASE2:Hg19::chr1:197886561..197886569,+#_2cbc638d5a1c3100157a051b1a279d1f | p10@LHX9 |
| 1.02e-23 | FFCP PHASE1:Hg19::chr1:197886561..197886569,+#_2cbc638d5a1c3100157a051b1a279d1f | p10@LHX9 |
| 1.03e-23 | FFCP PHASE2:Hg19::chr7:84122019..84122030,-#_f33aa0e7c907e922e0ff818d224a8899 | p18@SEMA3A |
| 1.03e-23 | FFCP PHASE1:Hg19::chr7:84122019..84122030,-#_f33aa0e7c907e922e0ff818d224a8899 | p18@SEMA3A |
| 3.29e-23 | FFCP PHASE2:Hg19::chrX:119693827..119693835,-#_d502b680af2d06e6c907403a8960e4d0 | p24@CUL4B |
| 3.29e-23 | FFCP PHASE1:Hg19::chrX:119693827..119693835,-#_d502b680af2d06e6c907403a8960e4d0 | p24@CUL4B |
