DOID:1749: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=squamous cell carcinoma | |name=squamous cell carcinoma | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:49, 12 September 2014
| Name: | squamous cell carcinoma | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A carcinoma that derives_from squamous epithelial cells." [url:http://en.wikipedia.org/wiki/Squamous_cell_carcinoma, url:http://www.medicinenet.com/skin_cancer/page2.htm] | ||
| Xrefs: |
| ||
| Synonyms: |
"epidermoid carcinoma" EXACT [CSP2005:2000-3145] "malignant squamous cell tumor" EXACT [NCI2004_11_17:C4971] "squamous carcinoma" EXACT [NCI2004_11_17:C2929] "squamous cell cancer" EXACT [] "squamous cell carcinoma (disorder)" EXACT [SNOMEDCT_2005_07_31:402815007] "squamous cell carcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:28899001] "squamous cell carcinoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189566008] "squamous cell Epithelioma" EXACT [NCI2004_11_17:C8999] | ||
| Alt_id: | DOID:5512 |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:305(carcinoma) |
|---|
Children
| is a: | DOID:4830 (adenosquamous carcinoma) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10412-106B7 (malignant trichilemmal cyst cell line:DJM-1)
- 10426-106D3 (epidermoid carcinoma cell line:A431)
- 10431-106D8 (epidermoid carcinoma cell line:Ca Ski)
- 10434-106E2 (oral squamous cell carcinoma cell line:Ca9-22)
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10463-106H4 (squamous cell carcinoma cell line:EC-GI-10)
- 10486-107A9 (squamous cell lung carcinoma cell line:EBC-1)
- 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
- 10512-107D8
- 10532-107G1
... further results Mouse (Mus musculus)
- 10412-106B7 (malignant trichilemmal cyst cell line:DJM-1)
- 10426-106D3 (epidermoid carcinoma cell line:A431)
- 10431-106D8 (epidermoid carcinoma cell line:Ca Ski)
- 10434-106E2 (oral squamous cell carcinoma cell line:Ca9-22)
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10463-106H4 (squamous cell carcinoma cell line:EC-GI-10)
- 10486-107A9 (squamous cell lung carcinoma cell line:EBC-1)
- 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
- 10512-107D8
- 10532-107G1
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:1749 (squamous cell carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.52e-75 | FFCP PHASE1:Hg19::chr1:209944599..209944616,-#_9d2cbefed9d6ac61e904574822f6fae5 | p@chr1:209944599..209944616, - |
| 1.52e-75 | FFCP PHASE2:Hg19::chr1:209944599..209944616,-#_9d2cbefed9d6ac61e904574822f6fae5 | p@chr1:209944599..209944616, - |
| 2.65e-72 | FFCP PHASE2:Hg19::chr11:70245655..70245668,-#_9cd96311d12c9dfbddee9d0beca59bb5 | p@chr11:70245655..70245668, - |
| 2.65e-72 | FFCP PHASE1:Hg19::chr11:70245655..70245668,-#_9cd96311d12c9dfbddee9d0beca59bb5 | p@chr11:70245655..70245668, - |
| 2.04e-63 | FFCP PHASE1:Hg19::chr1:55436540..55436544,-#_1a3f12861e65eeffe42d8c15b8871250 | p@chr1:55436540..55436544, - |
| 2.04e-63 | FFCP PHASE2:Hg19::chr1:55436540..55436544,-#_1a3f12861e65eeffe42d8c15b8871250 | p@chr1:55436540..55436544, - |
| 3.14e-63 | FFCP PHASE1:Hg19::chr7:55053327..55053342,+#_fe54b1a4549f07e75a763e4d8faf95f0 | p@chr7:55053327..55053342, + |
| 3.14e-63 | FFCP PHASE2:Hg19::chr7:55053327..55053342,+#_fe54b1a4549f07e75a763e4d8faf95f0 | p@chr7:55053327..55053342, + |
| 8.34e-63 | FFCP PHASE1:Hg19::chr3:151034414..151034434,-#_bb702cc8715ce5c07fe73e982e86dbf4 | p2@GPR87 |
| 8.34e-63 | FFCP PHASE2:Hg19::chr3:151034414..151034434,-#_bb702cc8715ce5c07fe73e982e86dbf4 | p2@GPR87 |
| 1.33e-60 | FFCP PHASE2:Hg19::chr6:19418214..19418218,-#_1c929652cfbee4e13d62cfff8a363bf2 | p@chr6:19418214..19418218, - |
| 1.33e-60 | FFCP PHASE1:Hg19::chr6:19418214..19418218,-#_1c929652cfbee4e13d62cfff8a363bf2 | p@chr6:19418214..19418218, - |
| 4.0e-57 | FFCP PHASE2:Hg19::chr1:209945462..209945477,-#_d927841649aef925e4ef1c3527dc3f1d | p@chr1:209945462..209945477, - |
| 4.0e-57 | FFCP PHASE1:Hg19::chr1:209945462..209945477,-#_d927841649aef925e4ef1c3527dc3f1d | p@chr1:209945462..209945477, - |
| 4.38e-56 | FFCP PHASE2:Hg19::chr7:55053266..55053282,+#_51bebe07454210e10a9fb3954911b548 | p@chr7:55053266..55053282, + |
| 4.38e-56 | FFCP PHASE1:Hg19::chr7:55053266..55053282,+#_51bebe07454210e10a9fb3954911b548 | p@chr7:55053266..55053282, + |
| 4.21e-53 | FFCP PHASE2:Hg19::chr1:153530641..153530645,-#_6a896477e2604efb2c4a4a1d8cdd683a | p@chr1:153530641..153530645, - |
| 4.21e-53 | FFCP PHASE1:Hg19::chr1:153530641..153530645,-#_6a896477e2604efb2c4a4a1d8cdd683a | p@chr1:153530641..153530645, - |
| 5.73e-53 | FFCP PHASE1:Hg19::chr21:38631055..38631068,-#_9f3c98a8a0ccf3ce8e0db36db440dbb8 | p@chr21:38631055..38631068, - |
| 5.73e-53 | FFCP PHASE2:Hg19::chr21:38631055..38631068,-#_9f3c98a8a0ccf3ce8e0db36db440dbb8 | p@chr21:38631055..38631068, - |
| 1.69e-50 | FFCP PHASE1:Hg19::chr8:126044339..126044344,-#_0f9cb99a85150f5ad9df3fd126143e7a | p@chr8:126044339..126044344, - |
| 1.69e-50 | FFCP PHASE2:Hg19::chr8:126044339..126044344,-#_0f9cb99a85150f5ad9df3fd126143e7a | p@chr8:126044339..126044344, - |
| 2.43e-49 | FFCP PHASE1:Hg19::chr17:39755734..39755747,-#_238289c4c1d0923386832f6101099326 | p@chr17:39755734..39755747, - |
| 2.43e-49 | FFCP PHASE2:Hg19::chr17:39755734..39755747,-#_238289c4c1d0923386832f6101099326 | p@chr17:39755734..39755747, - |
| 2.53e-46 | FFCP PHASE1:Hg19::chr10:54215029..54215039,-#_717d215338bb70ff6e6ff36b2f718bf9 | p5@ENST00000435813, p5@uc001jjs.2 |
| 2.53e-46 | FFCP PHASE2:Hg19::chr10:54215029..54215039,-#_717d215338bb70ff6e6ff36b2f718bf9 | p5@ENST00000435813, p5@uc001jjs.2 |
| 1.76e-45 | FFCP PHASE1:Hg19::chr18:61586483..61586487,+#_87820dc8f4adc14b2e4bb1e42211fc1f | p@chr18:61586483..61586487, + |
| 1.76e-45 | FFCP PHASE2:Hg19::chr18:61586483..61586487,+#_87820dc8f4adc14b2e4bb1e42211fc1f | p@chr18:61586483..61586487, + |
| 1.76e-45 | FFCP PHASE1:Hg19::chr17:39675950..39675974,-#_87820dc8f4adc14b2e4bb1e42211fc1f | p@chr17:39675950..39675974, - |
| 1.76e-45 | FFCP PHASE2:Hg19::chr17:39675950..39675974,-#_87820dc8f4adc14b2e4bb1e42211fc1f | p@chr17:39675950..39675974, - |
| 4.38e-44 | FFCP PHASE1:Hg19::chr3:153697368..153697372,+#_60b302fb0757175316c6e74e89b35c0a | p@chr3:153697368..153697372, + |
| 4.38e-44 | FFCP PHASE2:Hg19::chr3:153697368..153697372,+#_60b302fb0757175316c6e74e89b35c0a | p@chr3:153697368..153697372, + |
| 1.27e-43 | FFCP PHASE1:Hg19::chr19:51523412..51523427,-#_415e19580e3fb7d6e7c21b1f2063d43a | p2@KLK10 |
| 1.27e-43 | FFCP PHASE2:Hg19::chr19:51523412..51523427,-#_415e19580e3fb7d6e7c21b1f2063d43a | p2@KLK10 |
| 4.85e-43 | FFCP PHASE2:Hg19::chrX:15683147..15683159,-#_05028423ada5f7c90a2865743e39c0e2 | p3@TMEM27 |
| 4.85e-43 | FFCP PHASE1:Hg19::chr17:39675882..39675894,-#_05028423ada5f7c90a2865743e39c0e2 | p@chr17:39675882..39675894, - |
| 4.85e-43 | FFCP PHASE2:Hg19::chr17:39675882..39675894,-#_05028423ada5f7c90a2865743e39c0e2 | p@chr17:39675882..39675894, - |
| 4.85e-43 | FFCP PHASE1:Hg19::chrX:15683147..15683159,-#_05028423ada5f7c90a2865743e39c0e2 | p3@TMEM27 |
| 4.85e-43 | FFCP PHASE1:Hg19::chr7:55053219..55053226,+#_05028423ada5f7c90a2865743e39c0e2 | p@chr7:55053219..55053226, + |
| 4.85e-43 | FFCP PHASE2:Hg19::chr7:55053219..55053226,+#_05028423ada5f7c90a2865743e39c0e2 | p@chr7:55053219..55053226, + |
| 1.42e-40 | FFCP PHASE2:Hg19::chr13:74071880..74071894,+#_0a20058fb511b0479a20452d454af0a5 | p@chr13:74071880..74071894, + |
| 1.42e-40 | FFCP PHASE1:Hg19::chr13:74071880..74071894,+#_0a20058fb511b0479a20452d454af0a5 | p@chr13:74071880..74071894, + |
| 1.5e-40 | FFCP PHASE1:Hg19::chr5:150998590..150998611,-#_ef66310203f96f942929fc33991e034c | p@chr5:150998590..150998611, - |
| 1.5e-40 | FFCP PHASE2:Hg19::chr5:150998590..150998611,-#_ef66310203f96f942929fc33991e034c | p@chr5:150998590..150998611, - |
| 2.02e-40 | FFCP PHASE2:Hg19::chrX:41765898..41765915,-#_2242fd59171cf87fb4f5446b614cfa5f | p@chrX:41765898..41765915, - |
| 2.02e-40 | FFCP PHASE1:Hg19::chrX:41765898..41765915,-#_2242fd59171cf87fb4f5446b614cfa5f | p@chrX:41765898..41765915, - |
| 6.43e-40 | FFCP PHASE1:Hg19::chr20:30153874..30153891,+#_1b6427791b8d5abd45e60485d12715ef | p8@HM13 |
| 6.43e-40 | FFCP PHASE2:Hg19::chr20:30153874..30153891,+#_1b6427791b8d5abd45e60485d12715ef | p8@HM13 |
| 2.28e-39 | FFCP PHASE1:Hg19::chr17:72940334..72940358,+#_b4d7625d0c9e0f566468018ff34801ff | p@chr17:72940334..72940358, + |
| 2.28e-39 | FFCP PHASE2:Hg19::chr17:72940334..72940358,+#_b4d7625d0c9e0f566468018ff34801ff | p@chr17:72940334..72940358, + |
| 2.41e-39 | FFCP PHASE1:Hg19::chr10:54259403..54259416,+#_b9e0b3856ed5475424d73ef74eb11636 | p@chr10:54259403..54259416, + |
| 2.41e-39 | FFCP PHASE2:Hg19::chr10:54259403..54259416,+#_b9e0b3856ed5475424d73ef74eb11636 | p@chr10:54259403..54259416, + |
| 4.5e-38 | FFCP PHASE1:Hg19::chr7:55053540..55053550,+#_2c0758678491db52f17f2425514a1e43 | p@chr7:55053540..55053550, + |
| 4.5e-38 | FFCP PHASE2:Hg19::chr7:55053540..55053550,+#_2c0758678491db52f17f2425514a1e43 | p@chr7:55053540..55053550, + |
| 2.13e-37 | FFCP PHASE1:Hg19::chr11:57558934..57558956,+#_51b3001e773c0a6c4b3bdc8d4d702bfe | p8@CTNND1 |
| 2.13e-37 | FFCP PHASE2:Hg19::chr11:57558934..57558956,+#_51b3001e773c0a6c4b3bdc8d4d702bfe | p8@CTNND1 |
| 1.18e-36 | FFCP PHASE2:Hg19::chr12:20975224..20975226,-#_80abe3f59019471b12dbb350d50aab13 | p@chr12:20975224..20975226, - |
| 1.18e-36 | FFCP PHASE1:Hg19::chr12:20975224..20975226,-#_80abe3f59019471b12dbb350d50aab13 | p@chr12:20975224..20975226, - |
| 2.27e-36 | FFCP PHASE1:Hg19::chr20:52784969..52785020,+#_e124926aec3dacc55dcd3ff9f459f7c9 | p@chr20:52784969..52785020, + |
| 2.27e-36 | FFCP PHASE2:Hg19::chr20:52784969..52785020,+#_e124926aec3dacc55dcd3ff9f459f7c9 | p@chr20:52784969..52785020, + |
| 2.56e-36 | FFCP PHASE1:Hg19::chr5:39255776..39255791,+#_e7c23f4fd5b1e461bb817fa9717963fe | p@chr5:39255776..39255791, + |
| 2.56e-36 | FFCP PHASE2:Hg19::chr5:39255776..39255791,+#_e7c23f4fd5b1e461bb817fa9717963fe | p@chr5:39255776..39255791, + |
| 2.56e-36 | FFCP PHASE1:Hg19::chr17:39678090..39678101,-#_e7c23f4fd5b1e461bb817fa9717963fe | p4@KRT15 |
| 2.56e-36 | FFCP PHASE2:Hg19::chr17:39678090..39678101,-#_e7c23f4fd5b1e461bb817fa9717963fe | p4@KRT15 |
| 3.32e-36 | FFCP PHASE1:Hg19::chr2:31607762..31607771,-#_1199e488c3f39536ebfb4250ffffc311 | p@chr2:31607762..31607771, - |
| 3.32e-36 | FFCP PHASE2:Hg19::chr2:31607762..31607771,-#_1199e488c3f39536ebfb4250ffffc311 | p@chr2:31607762..31607771, - |
| 1.21e-35 | FFCP PHASE2:Hg19::chr9:114557207..114557230,-#_044b223688986677b359d23fd7002451 | p1@C9orf84 |
| 1.21e-35 | FFCP PHASE1:Hg19::chr9:114557207..114557230,-#_044b223688986677b359d23fd7002451 | p1@C9orf84 |
| 1.94e-35 | FFCP PHASE1:Hg19::chr9:114490545..114490560,-#_5c68c6f995d9be823523678196e6fc9b | p@chr9:114490545..114490560, - |
| 1.94e-35 | FFCP PHASE2:Hg19::chr9:114490545..114490560,-#_5c68c6f995d9be823523678196e6fc9b | p@chr9:114490545..114490560, - |
| 7.61e-35 | FFCP PHASE1:Hg19::chr7:20257377..20257401,+#_c327a8b227cfeb97f308ba091041f838 | p@chr7:20257377..20257401, + |
| 7.61e-35 | FFCP PHASE2:Hg19::chr7:20257377..20257401,+#_c327a8b227cfeb97f308ba091041f838 | p@chr7:20257377..20257401, + |
| 8.78e-35 | FFCP PHASE1:Hg19::chr8:128306991..128307011,-#_618dd919432a81f55977d57cf33280e8 | p@chr8:128306991..128307011, - |
| 8.78e-35 | FFCP PHASE2:Hg19::chr8:128306991..128307011,-#_618dd919432a81f55977d57cf33280e8 | p@chr8:128306991..128307011, - |
| 1.37e-34 | FFCP PHASE1:Hg19::chr20:10400400..10400411,-#_3185c340795232145fa6c5eecd823475 | p@chr20:10400400..10400411, - |
| 1.37e-34 | FFCP PHASE2:Hg19::chr20:10400400..10400411,-#_3185c340795232145fa6c5eecd823475 | p@chr20:10400400..10400411, - |
| 2.01e-34 | FFCP PHASE2:Hg19::chr14:51955719..51955733,+#_4d043a1cb77b81d671a2dc772ae25e3d | p15@FRMD6 |
| 2.01e-34 | FFCP PHASE1:Hg19::chr14:51955719..51955733,+#_4d043a1cb77b81d671a2dc772ae25e3d | p15@FRMD6 |
| 2.93e-34 | FFCP PHASE1:Hg19::chr11:393795..393799,-#_836367bb83e89f56fcf6ea98b8f8788b | p@chr11:393795..393799, - |
| 2.93e-34 | FFCP PHASE2:Hg19::chr11:393795..393799,-#_836367bb83e89f56fcf6ea98b8f8788b | p@chr11:393795..393799, - |
| 5.36e-34 | FFCP PHASE1:Hg19::chr6:10413321..10413336,+#_a5a787417d03f31a43dd9a5a7f3ff8d0 | p@chr6:10413321..10413336, + |
| 5.36e-34 | FFCP PHASE2:Hg19::chr6:10413321..10413336,+#_a5a787417d03f31a43dd9a5a7f3ff8d0 | p@chr6:10413321..10413336, + |
| 5.82e-34 | FFCP PHASE1:Hg19::chr1:115212619..115212636,-#_df5301802dee0af248309d77f6d2a502 | p2@DENND2C |
| 5.82e-34 | FFCP PHASE2:Hg19::chr1:115212619..115212636,-#_df5301802dee0af248309d77f6d2a502 | p2@DENND2C |
| 6.3e-34 | FFCP PHASE1:Hg19::chr10:105796014..105796053,-#_1ac878cd21cfe298ed71a0123bf9fe04 | p@chr10:105796014..105796053, - |
| 6.3e-34 | FFCP PHASE2:Hg19::chr10:105796014..105796053,-#_1ac878cd21cfe298ed71a0123bf9fe04 | p@chr10:105796014..105796053, - |
| 8.11e-34 | FFCP PHASE1:Hg19::chr11:57558973..57558988,+#_57a9dae3f05b647e99be0947879a05bf | p11@CTNND1 |
| 8.11e-34 | FFCP PHASE2:Hg19::chr11:57558973..57558988,+#_57a9dae3f05b647e99be0947879a05bf | p11@CTNND1 |
| 1.5e-33 | FFCP PHASE1:Hg19::chr6:43423785..43423800,-#_ed5a0c8ca5052376e0db5233420b3b61 | p3@DLK2 |
| 1.5e-33 | FFCP PHASE2:Hg19::chr6:43423785..43423800,-#_ed5a0c8ca5052376e0db5233420b3b61 | p3@DLK2 |
| 7.55e-33 | FFCP PHASE2:Hg19::chr15:79296820..79296829,-#_564017d51f8b04dbe247167f28d8556d | p@chr15:79296820..79296829, - |
| 7.55e-33 | FFCP PHASE1:Hg19::chr15:79296820..79296829,-#_564017d51f8b04dbe247167f28d8556d | p@chr15:79296820..79296829, - |
| 1.14e-32 | FFCP PHASE2:Hg19::chr12:47628434..47628438,+#_420090b0c9a6d1ef053e5b5eaa0999ac | p1@CU678929 |
| 1.14e-32 | FFCP PHASE1:Hg19::chr12:47628434..47628438,+#_420090b0c9a6d1ef053e5b5eaa0999ac | p1@CU678929 |
| 1.46e-32 | FFCP PHASE2:Hg19::chr12:52525577..52525579,-#_9b730dc416b636b27924a4a049186966 | p@chr12:52525577..52525579, - |
| 1.46e-32 | FFCP PHASE1:Hg19::chr12:52525577..52525579,-#_9b730dc416b636b27924a4a049186966 | p@chr12:52525577..52525579, - |
| 1.46e-32 | FFCP PHASE1:Hg19::chr20:10750941..10750951,+#_9b730dc416b636b27924a4a049186966 | p@chr20:10750941..10750951, + |
| 1.46e-32 | FFCP PHASE2:Hg19::chr17:76628163..76628174,-#_9b730dc416b636b27924a4a049186966 | p@chr17:76628163..76628174, - |
| 1.46e-32 | FFCP PHASE1:Hg19::chr17:76628163..76628174,-#_9b730dc416b636b27924a4a049186966 | p@chr17:76628163..76628174, - |
| 1.46e-32 | FFCP PHASE2:Hg19::chr20:10750941..10750951,+#_9b730dc416b636b27924a4a049186966 | p@chr20:10750941..10750951, + |
