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{{DOID
{{DOID
|id=DOID:3910
|alt_id=DOID:4826
|name=lung adenocarcinoma
|namespace=disease_ontology
|def=
|xref=MSH:C538231;;NCI:C3512;;SNOMEDCT_2010_1_31:254626006;;UMLS_CUI:C0152013;;UMLS_CUI:C1335060
|is_a=DOID:3908
|synonym="adenocarcinoma of lung" RELATED [];;"adenocarcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254626006];;"lung adenocarcinoma" EXACT [NCI2004_11_17:C3512];;"nonsmall cell adenocarcinoma" EXACT []
|comment=
|comment=
|alt_id=DOID:4826
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
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|has_quality=
|has_quality=
|id=DOID:3910
|is_a=DOID:3908
|is_obsolete=
|located_in=
|located_in=
|name=lung adenocarcinoma
|namespace=FANTOM
|obo_creation_date=
|part_of=
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|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="adenocarcinoma of lung" RELATED [];;"adenocarcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254626006];;"lung adenocarcinoma" EXACT [NCI2004_11_17:C3512];;"nonsmall cell adenocarcinoma" EXACT []
|union_of=
|xref=MSH:C538231;;NCI:C3512;;SNOMEDCT_2010_1_31:254626006;;UMLS_CUI:C0152013;;UMLS_CUI:C1335060
}}
}}

Latest revision as of 16:51, 12 September 2014

Name:lung adenocarcinoma
Namespace:FANTOM
Xrefs:
links:

MSH:C538231
NCI:C3512
SNOMEDCT_2010_1_31:254626006
UMLS_CUI:C0152013

UMLS_CUI:C1335060
Synonyms: "adenocarcinoma of lung" RELATED []
"adenocarcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254626006]
"lung adenocarcinoma" EXACT [NCI2004_11_17:C3512]
"nonsmall cell adenocarcinoma" EXACT []
Alt_id: DOID:4826

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:3908(non-small cell lung carcinoma)



Children
NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

  • 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
  • 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
  • 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)

Mouse (Mus musculus)

  • 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
  • 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
  • 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3910 (lung adenocarcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE2:Hg19::chrX:48056224..48056233,-#_d0071fb157d719127a1c866420489501p1@SSX5
1.55e-98FFCP PHASE2:Hg19::chr14:36536932..36536937,-#_d0071fb157d719127a1c866420489501p@chr14:36536932..36536937, -
1.55e-98FFCP PHASE2:Hg19::chr16:11118533..11118538,+#_d0071fb157d719127a1c866420489501p12@CLEC16A
1.55e-98FFCP PHASE1:Hg19::chr20:2779199..2779205,-#_d0071fb157d719127a1c866420489501p13@CPXM1
1.55e-98FFCP PHASE1:Hg19::chr16:11118533..11118538,+#_d0071fb157d719127a1c866420489501p12@CLEC16A
1.55e-98FFCP PHASE2:Hg19::chr7:63539651..63539654,+#_d0071fb157d719127a1c866420489501p1@ENST00000430271
1.55e-98FFCP PHASE1:Hg19::chr20:2779236..2779242,-#_d0071fb157d719127a1c866420489501p12@CPXM1
1.55e-98FFCP PHASE2:Hg19::chr20:2779140..2779150,-#_d0071fb157d719127a1c866420489501p9@CPXM1
1.55e-98FFCP PHASE1:Hg19::chr6:137314390..137314394,-#_d0071fb157d719127a1c866420489501p1@ENST00000418699, p1@ENST00000432330
1.55e-98FFCP PHASE2:Hg19::chr17:13574618..13574636,-#_d0071fb157d719127a1c866420489501p@chr17:13574618..13574636, -
1.55e-98FFCP PHASE1:Hg19::chr20:2779313..2779314,-#_d0071fb157d719127a1c866420489501p16@CPXM1
1.55e-98FFCP PHASE1:Hg19::chr3:87647430..87647437,-#_d0071fb157d719127a1c866420489501p@chr3:87647430..87647437, -
1.55e-98FFCP PHASE1:Hg19::chr17:13574618..13574636,-#_d0071fb157d719127a1c866420489501p@chr17:13574618..13574636, -
1.55e-98FFCP PHASE2:Hg19::chr20:2779199..2779205,-#_d0071fb157d719127a1c866420489501p13@CPXM1
1.55e-98FFCP PHASE1:Hg19::chrX:48056224..48056233,-#_d0071fb157d719127a1c866420489501p1@SSX5
1.55e-98FFCP PHASE2:Hg19::chr10:101690855..101690861,-#_d0071fb157d719127a1c866420489501p14@DNMBP
1.55e-98FFCP PHASE1:Hg19::chr10:101690855..101690861,-#_d0071fb157d719127a1c866420489501p14@DNMBP
1.55e-98FFCP PHASE2:Hg19::chr6:137314390..137314394,-#_d0071fb157d719127a1c866420489501p1@ENST00000418699, p1@ENST00000432330
1.55e-98FFCP PHASE1:Hg19::chr7:63539651..63539654,+#_d0071fb157d719127a1c866420489501p1@ENST00000430271
1.55e-98FFCP PHASE2:Hg19::chr20:2779236..2779242,-#_d0071fb157d719127a1c866420489501p12@CPXM1
1.55e-98FFCP PHASE2:Hg19::chr10:101691056..101691064,-#_d0071fb157d719127a1c866420489501p13@DNMBP
1.55e-98FFCP PHASE1:Hg19::chr20:2779140..2779150,-#_d0071fb157d719127a1c866420489501p9@CPXM1
1.55e-98FFCP PHASE1:Hg19::chr10:101691056..101691064,-#_d0071fb157d719127a1c866420489501p13@DNMBP
1.55e-98FFCP PHASE2:Hg19::chr17:63511856..63511858,-#_d0071fb157d719127a1c866420489501p@chr17:63511856..63511858, -
1.55e-98FFCP PHASE1:Hg19::chr14:36536932..36536937,-#_d0071fb157d719127a1c866420489501p@chr14:36536932..36536937, -
1.55e-98FFCP PHASE2:Hg19::chr20:2779313..2779314,-#_d0071fb157d719127a1c866420489501p16@CPXM1
1.55e-98FFCP PHASE1:Hg19::chr17:63511856..63511858,-#_d0071fb157d719127a1c866420489501p@chr17:63511856..63511858, -
1.55e-98FFCP PHASE2:Hg19::chr3:87647430..87647437,-#_d0071fb157d719127a1c866420489501p@chr3:87647430..87647437, -
3.96e-66FFCP PHASE2:Hg19::chr2:191696381..191696384,-#_b75fac3814a6e556cb8c598a4c11cd83p@chr2:191696381..191696384, -
3.96e-66FFCP PHASE1:Hg19::chr2:191696381..191696384,-#_b75fac3814a6e556cb8c598a4c11cd83p@chr2:191696381..191696384, -
2.74e-50FFCP PHASE1:Hg19::chrX:147062891..147062896,+#_2049e3ecc68073f777d15ff7de2f01e6p3@FMR1NB
2.74e-50FFCP PHASE1:Hg19::chr9:140350189..140350212,-#_2049e3ecc68073f777d15ff7de2f01e6p30@NELF
2.74e-50FFCP PHASE2:Hg19::chr11:104005546..104005596,-#_2049e3ecc68073f777d15ff7de2f01e6p@chr11:104005546..104005596, -
2.74e-50FFCP PHASE1:Hg19::chr11:104005546..104005596,-#_2049e3ecc68073f777d15ff7de2f01e6p@chr11:104005546..104005596, -
2.74e-50FFCP PHASE2:Hg19::chr8:94870047..94870056,+#_2049e3ecc68073f777d15ff7de2f01e6p30@PDP1
2.74e-50FFCP PHASE1:Hg19::chr4:169956294..169956301,-#_2049e3ecc68073f777d15ff7de2f01e6p@chr4:169956294..169956301, -
2.74e-50FFCP PHASE2:Hg19::chr10:101691101..101691115,-#_2049e3ecc68073f777d15ff7de2f01e6p7@DNMBP
2.74e-50FFCP PHASE2:Hg19::chr11:106266838..106266843,+#_2049e3ecc68073f777d15ff7de2f01e6p@chr11:106266838..106266843, +
2.74e-50FFCP PHASE1:Hg19::chr10:101691101..101691115,-#_2049e3ecc68073f777d15ff7de2f01e6p7@DNMBP
2.74e-50FFCP PHASE1:Hg19::chr11:106266838..106266843,+#_2049e3ecc68073f777d15ff7de2f01e6p@chr11:106266838..106266843, +
2.74e-50FFCP PHASE2:Hg19::chr11:41809203..41809208,-#_2049e3ecc68073f777d15ff7de2f01e6p@chr11:41809203..41809208, -
2.74e-50FFCP PHASE2:Hg19::chr9:140350189..140350212,-#_2049e3ecc68073f777d15ff7de2f01e6p30@NELF
2.74e-50FFCP PHASE1:Hg19::chr11:41809203..41809208,-#_2049e3ecc68073f777d15ff7de2f01e6p@chr11:41809203..41809208, -
2.74e-50FFCP PHASE2:Hg19::chr8:122157279..122157284,-#_2049e3ecc68073f777d15ff7de2f01e6p@chr8:122157279..122157284, -
2.74e-50FFCP PHASE2:Hg19::chrX:147062891..147062896,+#_2049e3ecc68073f777d15ff7de2f01e6p3@FMR1NB
2.74e-50FFCP PHASE2:Hg19::chr4:169956294..169956301,-#_2049e3ecc68073f777d15ff7de2f01e6p@chr4:169956294..169956301, -
2.74e-50FFCP PHASE1:Hg19::chr9:103785643..103785646,-#_2049e3ecc68073f777d15ff7de2f01e6p@chr9:103785643..103785646, -
2.74e-50FFCP PHASE2:Hg19::chr10:101691199..101691208,-#_2049e3ecc68073f777d15ff7de2f01e6p11@DNMBP
2.74e-50FFCP PHASE1:Hg19::chr10:101691199..101691208,-#_2049e3ecc68073f777d15ff7de2f01e6p11@DNMBP
2.74e-50FFCP PHASE1:Hg19::chr8:94870047..94870056,+#_2049e3ecc68073f777d15ff7de2f01e6p30@PDP1
2.74e-50FFCP PHASE2:Hg19::chr9:103785643..103785646,-#_2049e3ecc68073f777d15ff7de2f01e6p@chr9:103785643..103785646, -
2.74e-50FFCP PHASE1:Hg19::chr8:122157279..122157284,-#_2049e3ecc68073f777d15ff7de2f01e6p@chr8:122157279..122157284, -
4.52e-50FFCP PHASE2:Hg19::chr6:46985426..46985427,-#_039b3e66d84c90e14b40ae1ead9f3eadp@chr6:46985426..46985427, -
4.52e-50FFCP PHASE2:Hg19::chr1:93054640..93054674,-#_039b3e66d84c90e14b40ae1ead9f3eadp@chr1:93054640..93054674, -
4.52e-50FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_039b3e66d84c90e14b40ae1ead9f3eadp@chr6:45399263..45399274, +
4.52e-50FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_039b3e66d84c90e14b40ae1ead9f3eadp@chr6:45405332..45405343, +
4.52e-50FFCP PHASE2:Hg19::chr1:119837700..119837705,+#_039b3e66d84c90e14b40ae1ead9f3eadp@chr1:119837700..119837705, +
4.52e-50FFCP PHASE2:Hg19::chr17:63533845..63533851,-#_039b3e66d84c90e14b40ae1ead9f3eadp@chr17:63533845..63533851, -
4.52e-50FFCP PHASE2:Hg19::chr9:140349915..140349924,-#_039b3e66d84c90e14b40ae1ead9f3eadp34@NELF
4.52e-50FFCP PHASE1:Hg19::chr3:139035972..139036016,-#_039b3e66d84c90e14b40ae1ead9f3eadp@chr3:139035972..139036016, -
4.52e-50FFCP PHASE1:Hg19::chr17:63533845..63533851,-#_039b3e66d84c90e14b40ae1ead9f3eadp@chr17:63533845..63533851, -
4.52e-50FFCP PHASE1:Hg19::chr6:141743015..141743025,+#_039b3e66d84c90e14b40ae1ead9f3eadp@chr6:141743015..141743025, +
4.52e-50FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_039b3e66d84c90e14b40ae1ead9f3eadp@chr6:45399294..45399301, +
4.52e-50FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_039b3e66d84c90e14b40ae1ead9f3eadp@chr6:45405393..45405412, +
4.52e-50FFCP PHASE1:Hg19::chr6:169691363..169691375,-#_039b3e66d84c90e14b40ae1ead9f3eadp@chr6:169691363..169691375, -
4.52e-50FFCP PHASE1:Hg19::chr4:171012844..171012850,-#_039b3e66d84c90e14b40ae1ead9f3eadp12@AADAT
4.52e-50FFCP PHASE2:Hg19::chr15:55806847..55806854,-#_039b3e66d84c90e14b40ae1ead9f3eadp@chr15:55806847..55806854, -
4.52e-50FFCP PHASE1:Hg19::chr15:55806847..55806854,-#_039b3e66d84c90e14b40ae1ead9f3eadp@chr15:55806847..55806854, -
4.52e-50FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_039b3e66d84c90e14b40ae1ead9f3eadp@chr6:45399533..45399540, +
4.52e-50FFCP PHASE2:Hg19::chr20:2795718..2795731,+#_039b3e66d84c90e14b40ae1ead9f3eadp5@C20orf141
4.52e-50FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_039b3e66d84c90e14b40ae1ead9f3eadp@chr6:45405332..45405343, +
4.52e-50FFCP PHASE1:Hg19::chr12:65386452..65386492,-#_039b3e66d84c90e14b40ae1ead9f3eadp@chr12:65386452..65386492, -
4.52e-50FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_039b3e66d84c90e14b40ae1ead9f3eadp@chr6:45399245..45399258, +
4.52e-50FFCP PHASE2:Hg19::chr6:141743015..141743025,+#_039b3e66d84c90e14b40ae1ead9f3eadp@chr6:141743015..141743025, +
4.52e-50FFCP PHASE1:Hg19::chr6:46985426..46985427,-#_039b3e66d84c90e14b40ae1ead9f3eadp@chr6:46985426..46985427, -
4.52e-50FFCP PHASE1:Hg19::chr1:93054640..93054674,-#_039b3e66d84c90e14b40ae1ead9f3eadp@chr1:93054640..93054674, -
4.52e-50FFCP PHASE1:Hg19::chr2:118846114..118846125,+#_039b3e66d84c90e14b40ae1ead9f3eadp6@INSIG2
4.52e-50FFCP PHASE1:Hg19::chr9:140349856..140349859,-#_039b3e66d84c90e14b40ae1ead9f3eadp36@NELF
4.52e-50FFCP PHASE2:Hg19::chr6:169691363..169691375,-#_039b3e66d84c90e14b40ae1ead9f3eadp@chr6:169691363..169691375, -
4.52e-50FFCP PHASE2:Hg19::chr12:65386452..65386492,-#_039b3e66d84c90e14b40ae1ead9f3eadp@chr12:65386452..65386492, -
4.52e-50FFCP PHASE2:Hg19::chr3:139035972..139036016,-#_039b3e66d84c90e14b40ae1ead9f3eadp@chr3:139035972..139036016, -
4.52e-50FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_039b3e66d84c90e14b40ae1ead9f3eadp@chr6:45399533..45399540, +
4.52e-50FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_039b3e66d84c90e14b40ae1ead9f3eadp@chr6:45405393..45405412, +
4.52e-50FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_039b3e66d84c90e14b40ae1ead9f3eadp@chr6:45399263..45399274, +
4.52e-50FFCP PHASE1:Hg19::chr1:119837700..119837705,+#_039b3e66d84c90e14b40ae1ead9f3eadp@chr1:119837700..119837705, +
4.52e-50FFCP PHASE2:Hg19::chr4:171012844..171012850,-#_039b3e66d84c90e14b40ae1ead9f3eadp12@AADAT
4.52e-50FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_039b3e66d84c90e14b40ae1ead9f3eadp@chr6:45399245..45399258, +
4.52e-50FFCP PHASE1:Hg19::chr9:140349915..140349924,-#_039b3e66d84c90e14b40ae1ead9f3eadp34@NELF
4.52e-50FFCP PHASE2:Hg19::chr2:118846114..118846125,+#_039b3e66d84c90e14b40ae1ead9f3eadp6@INSIG2
4.52e-50FFCP PHASE2:Hg19::chr9:140349856..140349859,-#_039b3e66d84c90e14b40ae1ead9f3eadp36@NELF
4.52e-50FFCP PHASE1:Hg19::chr20:2795718..2795731,+#_039b3e66d84c90e14b40ae1ead9f3eadp5@C20orf141
4.52e-50FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_039b3e66d84c90e14b40ae1ead9f3eadp@chr6:45399294..45399301, +
4.0e-45FFCP PHASE1:Hg19::chr2:75751179..75751194,+#_05f97b2465509dece0ab4512baffc208p1@BC018659
4.0e-45FFCP PHASE2:Hg19::chr2:75751179..75751194,+#_05f97b2465509dece0ab4512baffc208p1@BC018659
1.1e-40FFCP PHASE1:Hg19::chr14:29047235..29047244,+#_9c1994485e69976aea7a62f11fb196d7p@chr14:29047235..29047244, +
1.1e-40FFCP PHASE2:Hg19::chr14:29047235..29047244,+#_9c1994485e69976aea7a62f11fb196d7p@chr14:29047235..29047244, +
3.61e-34FFCP PHASE1:Hg19::chr13:70823810..70823813,+#_f3f1cab790f7966ea0cee022550f9a12p@chr13:70823810..70823813, +
3.61e-34FFCP PHASE2:Hg19::chr8:144260966..144260967,-#_f3f1cab790f7966ea0cee022550f9a12p@chr8:144260966..144260967, -
3.61e-34FFCP PHASE2:Hg19::chr1:87994589..87994604,-#_f3f1cab790f7966ea0cee022550f9a12p@chr1:87994589..87994604, -
3.61e-34FFCP PHASE2:Hg19::chr13:70823810..70823813,+#_f3f1cab790f7966ea0cee022550f9a12p@chr13:70823810..70823813, +

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