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{{UBERON
{{UBERON
|id=UBERON:0000047
|alt_id=
|name=simple eye
|namespace=
|def="An eye with one concave chamber. Note that 'simple' does not imply a reduced level of complexity or acuity." [Wikipedia:Eye#Simple_eyes]
|xref=TGMA:0000729
|is_a=UBERON:0000970
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An eye with one concave chamber. Note that 'simple' does not imply a reduced level of complexity or acuity." [Wikipedia:Eye#Simple_eyes]
|subset=grouping_class;;uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000047
|is_a=UBERON:0000970
|is_obsolete=
|located_in=
|located_in=
|name=simple eye
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=grouping_class;;uberon_slim
|synonym=
|union_of=
|xref=TGMA:0000729
}}
}}

Latest revision as of 17:04, 12 September 2014

Name:simple eye
Namespace:FANTOM
Definition:"An eye with one concave chamber. Note that 'simple' does not imply a reduced level of complexity or acuity." [Wikipedia:Eye#Simple_eyes]
Xrefs:
links:
TGMA:0000729
Subset: grouping_class
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000970(eye)



Children

is a:UBERON:0000019 (camera-type eye)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000047 (simple eye), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.31e-86FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_ba4fd8a25a6517d2dd42e6c88f43d05ap@chr16:21743134..21743139, -
1.31e-86FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_ba4fd8a25a6517d2dd42e6c88f43d05ap@chr17:31818106..31818119, +
1.31e-86FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_ba4fd8a25a6517d2dd42e6c88f43d05ap@chr3:129525389..129525400, -
1.31e-86FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_ba4fd8a25a6517d2dd42e6c88f43d05ap1@E130218I03Rik
1.31e-86FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_ba4fd8a25a6517d2dd42e6c88f43d05ap@chr11:77532391..77532408, -
1.31e-86FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_ba4fd8a25a6517d2dd42e6c88f43d05ap8@Osbp2
1.31e-86FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_ba4fd8a25a6517d2dd42e6c88f43d05ap1@E130218I03Rik
1.31e-86FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_ba4fd8a25a6517d2dd42e6c88f43d05ap3@Osbp2
1.31e-86FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_ba4fd8a25a6517d2dd42e6c88f43d05ap@chr17:31815126..31815139, -
1.31e-86FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_ba4fd8a25a6517d2dd42e6c88f43d05ap@chr17:31817987..31818013, +
1.31e-86FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_ba4fd8a25a6517d2dd42e6c88f43d05ap1@Mir184
1.31e-86FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_ba4fd8a25a6517d2dd42e6c88f43d05ap@chr11:77532283..77532316, -
1.31e-86FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_ba4fd8a25a6517d2dd42e6c88f43d05ap@chr17:31817987..31818013, +
1.31e-86FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_ba4fd8a25a6517d2dd42e6c88f43d05ap4@Dct
1.31e-86FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_ba4fd8a25a6517d2dd42e6c88f43d05ap4@Dct
1.31e-86FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_ba4fd8a25a6517d2dd42e6c88f43d05ap@chr10:127668442..127668453, +
1.31e-86FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_ba4fd8a25a6517d2dd42e6c88f43d05ap3@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_ba4fd8a25a6517d2dd42e6c88f43d05ap6@Celf1
1.31e-86FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_ba4fd8a25a6517d2dd42e6c88f43d05ap@chr3:129525389..129525400, -
1.31e-86FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_ba4fd8a25a6517d2dd42e6c88f43d05ap@chr17:31818263..31818276, +
1.31e-86FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_ba4fd8a25a6517d2dd42e6c88f43d05ap1@Mir184
1.31e-86FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_ba4fd8a25a6517d2dd42e6c88f43d05ap@chr17:31818263..31818276, +
1.31e-86FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_ba4fd8a25a6517d2dd42e6c88f43d05ap5@Zfp365
1.31e-86FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_ba4fd8a25a6517d2dd42e6c88f43d05ap@chr11:77532391..77532408, -
1.31e-86FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_ba4fd8a25a6517d2dd42e6c88f43d05ap5@Zfp365
1.31e-86FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_ba4fd8a25a6517d2dd42e6c88f43d05ap6@Celf1
1.31e-86FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_ba4fd8a25a6517d2dd42e6c88f43d05ap@chr17:31818106..31818119, +
1.31e-86FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_ba4fd8a25a6517d2dd42e6c88f43d05ap@chr11:77532283..77532316, -
1.31e-86FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_ba4fd8a25a6517d2dd42e6c88f43d05ap@chr16:21743134..21743139, -
1.31e-86FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_ba4fd8a25a6517d2dd42e6c88f43d05ap8@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_ba4fd8a25a6517d2dd42e6c88f43d05ap@chr17:31815126..31815139, -
1.31e-86FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_ba4fd8a25a6517d2dd42e6c88f43d05ap@chr10:127668442..127668453, +
2.3e-78FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_aad796e66d9e9805524899897545f1bap@chr7:64675015..64675028, +
2.3e-78FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_aad796e66d9e9805524899897545f1bap3@LOC100504989, p3@Timeless
2.3e-78FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_aad796e66d9e9805524899897545f1bap@chr7:64675015..64675028, +
2.3e-78FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_aad796e66d9e9805524899897545f1bap3@LOC100504989, p3@Timeless
2.82e-78FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_8f046ee9c320997b780b7355a7674db2p@chr6:97891135..97891147, +
2.82e-78FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_8f046ee9c320997b780b7355a7674db2p6@Pax6
2.82e-78FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_8f046ee9c320997b780b7355a7674db2p@chr6:97891135..97891147, +
2.82e-78FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_8f046ee9c320997b780b7355a7674db2p6@Pax6
3.46e-78FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_2058e52f9238564e02a31538c0b7e337p1@4933429O19Rik
3.46e-78FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_2058e52f9238564e02a31538c0b7e337p1@4933429O19Rik
4.97e-77FFCP PHASE1:Mm9::chr1:65147224..65147236,-#_14af3e92c1d106003f3b545fd8d2e6e9p@chr1:65147224..65147236, -
4.97e-77FFCP PHASE2:Mm9::chr16:56204438..56204451,+#_14af3e92c1d106003f3b545fd8d2e6e9p1@Impg2
4.97e-77FFCP PHASE2:Mm9::chr5:112696408..112696421,-#_14af3e92c1d106003f3b545fd8d2e6e9p@chr5:112696408..112696421, -
4.97e-77FFCP PHASE1:Mm9::chr17:31816584..31816600,+#_14af3e92c1d106003f3b545fd8d2e6e9p@chr17:31816584..31816600, +
4.97e-77FFCP PHASE1:Mm9::chr11:95705150..95705170,+#_14af3e92c1d106003f3b545fd8d2e6e9p3@Gngt2
4.97e-77FFCP PHASE2:Mm9::chr1:152166537..152166579,+#_14af3e92c1d106003f3b545fd8d2e6e9p1@Pdc
4.97e-77FFCP PHASE1:Mm9::chr17:31818629..31818644,+#_14af3e92c1d106003f3b545fd8d2e6e9p@chr17:31818629..31818644, +
4.97e-77FFCP PHASE1:Mm9::chr5:113506006..113506025,-#_14af3e92c1d106003f3b545fd8d2e6e9p@chr5:113506006..113506025, -
4.97e-77FFCP PHASE1:Mm9::chr14:52730585..52730607,+#_14af3e92c1d106003f3b545fd8d2e6e9p1@Rpgrip1
4.97e-77FFCP PHASE2:Mm9::chr5:112690636..112690656,+#_14af3e92c1d106003f3b545fd8d2e6e9p@chr5:112690636..112690656, +
4.97e-77FFCP PHASE1:Mm9::chr3:129525435..129525448,-#_14af3e92c1d106003f3b545fd8d2e6e9p2@Rrh
4.97e-77FFCP PHASE1:Mm9::chr1:65146997..65147021,-#_14af3e92c1d106003f3b545fd8d2e6e9p@chr1:65146997..65147021, -
4.97e-77FFCP PHASE1:Mm9::chr1:65149656..65149674,-#_14af3e92c1d106003f3b545fd8d2e6e9p2@Cryga
4.97e-77FFCP PHASE2:Mm9::chr5:113506006..113506025,-#_14af3e92c1d106003f3b545fd8d2e6e9p@chr5:113506006..113506025, -
4.97e-77FFCP PHASE1:Mm9::chr17:31818215..31818239,-#_14af3e92c1d106003f3b545fd8d2e6e9p@chr17:31818215..31818239, -
4.97e-77FFCP PHASE2:Mm9::chr3:34488839..34488876,+#_14af3e92c1d106003f3b545fd8d2e6e9p1@ENSMUST00000173365
4.97e-77FFCP PHASE1:Mm9::chr9:107964319..107964338,-#_14af3e92c1d106003f3b545fd8d2e6e9p11@Rnf123
4.97e-77FFCP PHASE1:Mm9::chr5:112692580..112692595,+#_14af3e92c1d106003f3b545fd8d2e6e9p@chr5:112692580..112692595, +
4.97e-77FFCP PHASE2:Mm9::chr17:31817947..31817965,+#_14af3e92c1d106003f3b545fd8d2e6e9p@chr17:31817947..31817965, +
4.97e-77FFCP PHASE2:Mm9::chr1:65147201..65147212,-#_14af3e92c1d106003f3b545fd8d2e6e9p@chr1:65147201..65147212, -
4.97e-77FFCP PHASE2:Mm9::chr5:112690744..112690755,+#_14af3e92c1d106003f3b545fd8d2e6e9p@chr5:112690744..112690755, +
4.97e-77FFCP PHASE2:Mm9::chr2:93906955..93906973,-#_14af3e92c1d106003f3b545fd8d2e6e9p2@Hsd17b12
4.97e-77FFCP PHASE2:Mm9::chr11:95705150..95705170,+#_14af3e92c1d106003f3b545fd8d2e6e9p3@Gngt2
4.97e-77FFCP PHASE2:Mm9::chr10:127668480..127668491,+#_14af3e92c1d106003f3b545fd8d2e6e9p@chr10:127668480..127668491, +
4.97e-77FFCP PHASE1:Mm9::chr14:49501519..49501530,-#_14af3e92c1d106003f3b545fd8d2e6e9p@chr14:49501519..49501530, -
4.97e-77FFCP PHASE2:Mm9::chr7:29477874..29477889,+#_14af3e92c1d106003f3b545fd8d2e6e9p6@Fbxo27
4.97e-77FFCP PHASE1:Mm9::chr5:112688342..112688357,+#_14af3e92c1d106003f3b545fd8d2e6e9p@chr5:112688342..112688357, +
4.97e-77FFCP PHASE1:Mm9::chr11:77532270..77532280,-#_14af3e92c1d106003f3b545fd8d2e6e9p@chr11:77532270..77532280, -
4.97e-77FFCP PHASE1:Mm9::chr10:127668686..127668697,+#_14af3e92c1d106003f3b545fd8d2e6e9p4@LOC100504989, p4@Timeless
4.97e-77FFCP PHASE2:Mm9::chr4:19208009..19208054,+#_14af3e92c1d106003f3b545fd8d2e6e9p1@Cngb3
4.97e-77FFCP PHASE2:Mm9::chr5:112675556..112675574,-#_14af3e92c1d106003f3b545fd8d2e6e9p@chr5:112675556..112675574, -
4.97e-77FFCP PHASE1:Mm9::chr1:152166537..152166579,+#_14af3e92c1d106003f3b545fd8d2e6e9p1@Pdc
4.97e-77FFCP PHASE2:Mm9::chr17:31818215..31818239,-#_14af3e92c1d106003f3b545fd8d2e6e9p@chr17:31818215..31818239, -
4.97e-77FFCP PHASE2:Mm9::chr3:129525405..129525428,-#_14af3e92c1d106003f3b545fd8d2e6e9p1@Rrh
4.97e-77FFCP PHASE1:Mm9::chr17:31817947..31817965,+#_14af3e92c1d106003f3b545fd8d2e6e9p@chr17:31817947..31817965, +
4.97e-77FFCP PHASE2:Mm9::chr9:107964319..107964338,-#_14af3e92c1d106003f3b545fd8d2e6e9p11@Rnf123
4.97e-77FFCP PHASE1:Mm9::chr5:112690963..112690994,+#_14af3e92c1d106003f3b545fd8d2e6e9p@chr5:112690963..112690994, +
4.97e-77FFCP PHASE1:Mm9::chr6:115162924..115162933,+#_14af3e92c1d106003f3b545fd8d2e6e9p@chr6:115162924..115162933, +
4.97e-77FFCP PHASE2:Mm9::chr10:93761330..93761358,-#_14af3e92c1d106003f3b545fd8d2e6e9p1@Gm4792
4.97e-77FFCP PHASE1:Mm9::chr15:36655026..36655032,+#_14af3e92c1d106003f3b545fd8d2e6e9p@chr15:36655026..36655032, +
4.97e-77FFCP PHASE1:Mm9::chr3:129525452..129525463,-#_14af3e92c1d106003f3b545fd8d2e6e9p3@Rrh
4.97e-77FFCP PHASE2:Mm9::chr1:38092602..38092616,+#_14af3e92c1d106003f3b545fd8d2e6e9p@chr1:38092602..38092616, +
4.97e-77FFCP PHASE2:Mm9::chr14:35413322..35413333,-#_14af3e92c1d106003f3b545fd8d2e6e9p1@Opn4
4.97e-77FFCP PHASE2:Mm9::chr5:112698505..112698537,-#_14af3e92c1d106003f3b545fd8d2e6e9p@chr5:112698505..112698537, -
4.97e-77FFCP PHASE1:Mm9::chr7:29477874..29477889,+#_14af3e92c1d106003f3b545fd8d2e6e9p6@Fbxo27
4.97e-77FFCP PHASE1:Mm9::chr5:113507470..113507483,-#_14af3e92c1d106003f3b545fd8d2e6e9p@chr5:113507470..113507483, -
4.97e-77FFCP PHASE2:Mm9::chr1:65147224..65147236,-#_14af3e92c1d106003f3b545fd8d2e6e9p@chr1:65147224..65147236, -
4.97e-77FFCP PHASE2:Mm9::chr5:112688342..112688357,+#_14af3e92c1d106003f3b545fd8d2e6e9p@chr5:112688342..112688357, +
4.97e-77FFCP PHASE2:Mm9::chr14:52730585..52730607,+#_14af3e92c1d106003f3b545fd8d2e6e9p1@Rpgrip1
4.97e-77FFCP PHASE1:Mm9::chr10:127668799..127668810,+#_14af3e92c1d106003f3b545fd8d2e6e9p5@LOC100504989, p5@Timeless
4.97e-77FFCP PHASE2:Mm9::chr5:113506190..113506202,-#_14af3e92c1d106003f3b545fd8d2e6e9p@chr5:113506190..113506202, -
4.97e-77FFCP PHASE2:Mm9::chr3:129525435..129525448,-#_14af3e92c1d106003f3b545fd8d2e6e9p2@Rrh
4.97e-77FFCP PHASE2:Mm9::chr1:65149656..65149674,-#_14af3e92c1d106003f3b545fd8d2e6e9p2@Cryga
4.97e-77FFCP PHASE1:Mm9::chr1:38092602..38092616,+#_14af3e92c1d106003f3b545fd8d2e6e9p@chr1:38092602..38092616, +
4.97e-77FFCP PHASE2:Mm9::chr5:112690963..112690994,+#_14af3e92c1d106003f3b545fd8d2e6e9p@chr5:112690963..112690994, +
4.97e-77FFCP PHASE2:Mm9::chr8:77582172..77582183,+#_14af3e92c1d106003f3b545fd8d2e6e9p@chr8:77582172..77582183, +
4.97e-77FFCP PHASE2:Mm9::chr7:28282354..28282365,+#_14af3e92c1d106003f3b545fd8d2e6e9p@chr7:28282354..28282365, +
4.97e-77FFCP PHASE2:Mm9::chr5:113507470..113507483,-#_14af3e92c1d106003f3b545fd8d2e6e9p@chr5:113507470..113507483, -

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