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{{UBERON
{{UBERON
|id=UBERON:0000310
|alt_id=UBERON:BTO_0000149-FMA_9601
|name=breast
|namespace=
|def="The breast is the upper ventral region of an animal's torso, particularly that of mammals, including human beings. The breasts of a female primate遯ｶ蜀ｱ body contain the mammary glands, which secrete milk used to feed infants. Both men and women develop breasts from the same embryological tissues. However, at puberty female sex hormones, mainly estrogens, promote breast development, which does not happen with men. As a result women's breasts become more prominent than men's. [WP,unvetted]." [Wikipedia:Breast]
|xref=BTO:0000149;;EV:0100124;;FMA:9601;;GAID:33;;galen:Breast;;http://upload.wikimedia.org/wikipedia/commons/6/6e/Closeup_of_female_breast.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Closeup_of_female_breast.jpg/200px-Closeup_of_female_breast.jpg;;MESH:A.01.236;;ncithesaurus:Breast;;OpenCyc:Mx4rvVjV7ZwpEbGdrcN5Y29ycA;;SCTID:181131000
|is_a=UBERON:0000475
|synonym="mamma" RELATED LATIN [Wikipedia:Breast];;"mammary part of chest" EXACT [FMA:9601];;"mammary region" EXACT [FMA:9601]
|comment=
|comment=
|alt_id=UBERON:BTO_0000149-FMA_9601
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The breast is the upper ventral region of an animal's torso, particularly that of mammals, including human beings. The breasts of a female primate遯ｶ蜀ｱ body contain the mammary glands, which secrete milk used to feed infants. Both men and women develop breasts from the same embryological tissues. However, at puberty female sex hormones, mainly estrogens, promote breast development, which does not happen with men. As a result women's breasts become more prominent than men's. [WP,unvetted]." [Wikipedia:Breast]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000310
|is_a=UBERON:0000475
|is_obsolete=
|located_in=
|located_in=
|name=breast
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001443
|part_of=UBERON:0001443
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="mamma" RELATED LATIN [Wikipedia:Breast];;"mammary part of chest" EXACT [FMA:9601];;"mammary region" EXACT [FMA:9601]
|union_of=
|xref=BTO:0000149;;EV:0100124;;FMA:9601;;GAID:33;;galen:Breast;;http://upload.wikimedia.org/wikipedia/commons/6/6e/Closeup_of_female_breast.jpg;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/6e/Closeup_of_female_breast.jpg/200px-Closeup_of_female_breast.jpg;;MESH:A.01.236;;ncithesaurus:Breast;;OpenCyc:Mx4rvVjV7ZwpEbGdrcN5Y29ycA;;SCTID:181131000
}}
}}

Latest revision as of 17:08, 12 September 2014

Name:breast
Namespace:FANTOM
Definition:"The breast is the upper ventral region of an animal's torso, particularly that of mammals, including human beings. The breasts of a female primate遯ｶ蜀ｱ body contain the mammary glands, which secrete milk used to feed infants. Both men and women develop breasts from the same embryological tissues. However, at puberty female sex hormones, mainly estrogens, promote breast development, which does not happen with men. As a result women's breasts become more prominent than men's. [WP,unvetted]." [Wikipedia:Breast]
Xrefs:
links:

BTO:0000149
EV:0100124
FMA:9601
GAID:33
galen:Breast
[1]
[2]
MESH:A.01.236
ncithesaurus:Breast
OpenCyc:Mx4rvVjV7ZwpEbGdrcN5Y29ycA

SCTID:181131000
Synonyms: "mamma" RELATED LATIN [Wikipedia:Breast]
"mammary part of chest" EXACT [FMA:9601]
"mammary region" EXACT [FMA:9601]
Alt_id: UBERON:BTO_0000149-FMA_9601

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000475(organism subdivision)
part_of:UBERON:0001443(chest)



Children

derives from:FF:0010080 (human breast - adult sample),FF:0100816 (breast cell line sample)
part of:CL:0002580 (preadipocyte of the breast),CL:0002617 (adipocyte of breast),FF:0011319 (mouse lung- embryo E12 sample),FF:0011338 (mouse lung- embryo E14 sample),FF:0011348 (mouse lung- embryo E15 sample),FF:0011357 (mouse lung- embryo E16 sample),FF:0011368 (mouse lung- embryo E17 sample),FF:28-22B1 (lung, adult),FF:354-16G2 (lung, embryo E12),FF:404-26F8 (lung, embryo E14),FF:432-17C5 (lung, embryo E15),FF:458-17B6 (lung, embryo E16),FF:480-44A6 (lung, embryo E17)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000310 (breast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.79e-79FFCP PHASE2:Hg19::chr17:74574500..74574512,-#_815ad8bc14653f667e1e06274bf5e92dp@chr17:74574500..74574512, -
5.79e-79FFCP PHASE1:Hg19::chr17:74574500..74574512,-#_815ad8bc14653f667e1e06274bf5e92dp@chr17:74574500..74574512, -
1.1e-59FFCP PHASE1:Hg19::chr10:9012128..9012139,+#_1261c9191d449a02cf18119e00a9aad6p2@ENST00000456526
1.1e-59FFCP PHASE1:Hg19::chr10:19498407..19498415,+#_1261c9191d449a02cf18119e00a9aad6p@chr10:19498407..19498415, +
1.1e-59FFCP PHASE2:Hg19::chr10:9012128..9012139,+#_1261c9191d449a02cf18119e00a9aad6p2@ENST00000456526
1.1e-59FFCP PHASE1:Hg19::chr12:3324464..3324485,+#_1261c9191d449a02cf18119e00a9aad6p4@TSPAN9
1.1e-59FFCP PHASE2:Hg19::chr21:41711178..41711186,-#_1261c9191d449a02cf18119e00a9aad6p@chr21:41711178..41711186, -
1.1e-59FFCP PHASE1:Hg19::chr10:8904309..8904317,+#_1261c9191d449a02cf18119e00a9aad6p@chr10:8904309..8904317, +
1.1e-59FFCP PHASE2:Hg19::chr10:8904309..8904317,+#_1261c9191d449a02cf18119e00a9aad6p@chr10:8904309..8904317, +
1.1e-59FFCP PHASE1:Hg19::chr21:41756567..41756583,-#_1261c9191d449a02cf18119e00a9aad6p@chr21:41756567..41756583, -
1.1e-59FFCP PHASE2:Hg19::chr17:38843592..38843605,+#_1261c9191d449a02cf18119e00a9aad6p@chr17:38843592..38843605, +
1.1e-59FFCP PHASE1:Hg19::chr11:85539944..85539950,+#_1261c9191d449a02cf18119e00a9aad6p@chr11:85539944..85539950, +
1.1e-59FFCP PHASE1:Hg19::chr9:83986187..83986191,-#_1261c9191d449a02cf18119e00a9aad6p@chr9:83986187..83986191, -
1.1e-59FFCP PHASE2:Hg19::chr21:41755024..41755027,+#_1261c9191d449a02cf18119e00a9aad6p2@DSCAM-AS1
1.1e-59FFCP PHASE2:Hg19::chr10:19498507..19498511,+#_1261c9191d449a02cf18119e00a9aad6p@chr10:19498507..19498511, +
1.1e-59FFCP PHASE1:Hg19::chr10:8910201..8910211,+#_1261c9191d449a02cf18119e00a9aad6p@chr10:8910201..8910211, +
1.1e-59FFCP PHASE2:Hg19::chr10:8910201..8910211,+#_1261c9191d449a02cf18119e00a9aad6p@chr10:8910201..8910211, +
1.1e-59FFCP PHASE1:Hg19::chr10:19498507..19498511,+#_1261c9191d449a02cf18119e00a9aad6p@chr10:19498507..19498511, +
1.1e-59FFCP PHASE1:Hg19::chr21:41711178..41711186,-#_1261c9191d449a02cf18119e00a9aad6p@chr21:41711178..41711186, -
1.1e-59FFCP PHASE2:Hg19::chr21:41755185..41755210,+#_1261c9191d449a02cf18119e00a9aad6p1@DSCAM-AS1
1.1e-59FFCP PHASE2:Hg19::chr10:19498541..19498551,+#_1261c9191d449a02cf18119e00a9aad6p@chr10:19498541..19498551, +
1.1e-59FFCP PHASE1:Hg19::chr10:9012087..9012100,+#_1261c9191d449a02cf18119e00a9aad6p1@ENST00000456526
1.1e-59FFCP PHASE2:Hg19::chr10:9012087..9012100,+#_1261c9191d449a02cf18119e00a9aad6p1@ENST00000456526
1.1e-59FFCP PHASE2:Hg19::chr12:3324464..3324485,+#_1261c9191d449a02cf18119e00a9aad6p4@TSPAN9
1.1e-59FFCP PHASE1:Hg19::chr17:38843592..38843605,+#_1261c9191d449a02cf18119e00a9aad6p@chr17:38843592..38843605, +
1.1e-59FFCP PHASE1:Hg19::chr10:19498541..19498551,+#_1261c9191d449a02cf18119e00a9aad6p@chr10:19498541..19498551, +
1.1e-59FFCP PHASE1:Hg19::chr21:41755024..41755027,+#_1261c9191d449a02cf18119e00a9aad6p2@DSCAM-AS1
1.1e-59FFCP PHASE2:Hg19::chr21:41756567..41756583,-#_1261c9191d449a02cf18119e00a9aad6p@chr21:41756567..41756583, -
1.1e-59FFCP PHASE2:Hg19::chr10:19498568..19498573,+#_1261c9191d449a02cf18119e00a9aad6p@chr10:19498568..19498573, +
1.1e-59FFCP PHASE2:Hg19::chr11:85539944..85539950,+#_1261c9191d449a02cf18119e00a9aad6p@chr11:85539944..85539950, +
1.1e-59FFCP PHASE1:Hg19::chr10:19498568..19498573,+#_1261c9191d449a02cf18119e00a9aad6p@chr10:19498568..19498573, +
1.1e-59FFCP PHASE2:Hg19::chr10:19498407..19498415,+#_1261c9191d449a02cf18119e00a9aad6p@chr10:19498407..19498415, +
1.1e-59FFCP PHASE1:Hg19::chr21:41755185..41755210,+#_1261c9191d449a02cf18119e00a9aad6p1@DSCAM-AS1
1.1e-59FFCP PHASE2:Hg19::chr9:83986187..83986191,-#_1261c9191d449a02cf18119e00a9aad6p@chr9:83986187..83986191, -
3.91e-58FFCP PHASE2:Mm9::chr17:67043365..67043374,-#_ae3c30c8b17e4cb117244a9298964e07p17@Ptprm
3.91e-58FFCP PHASE1:Mm9::chr17:67043365..67043374,-#_ae3c30c8b17e4cb117244a9298964e07p17@Ptprm
4.03e-53FFCP PHASE2:Hg19::chr3:129226514..129226531,+#_5ea58262b0f60a4c780ed692d6706a88p@chr3:129226514..129226531, +
4.03e-53FFCP PHASE1:Hg19::chr3:129226514..129226531,+#_5ea58262b0f60a4c780ed692d6706a88p@chr3:129226514..129226531, +
1.39e-49FFCP PHASE1:Hg19::chr19:18899082..18899091,+#_a16f450e431aa50e03fdd42fc9a124a8p@chr19:18899082..18899091, +
1.39e-49FFCP PHASE2:Hg19::chr19:18899082..18899091,+#_a16f450e431aa50e03fdd42fc9a124a8p@chr19:18899082..18899091, +
6.34e-47FFCP PHASE2:Mm9::chr6:14851605..14851614,+#_4d0b91dea3377fbd457f3c3816943990p17@Foxp2
6.34e-47FFCP PHASE1:Mm9::chr6:14851605..14851614,+#_4d0b91dea3377fbd457f3c3816943990p17@Foxp2
1.12e-45FFCP PHASE2:Hg19::chr1:240577171..240577181,-#_5a78c1832f49eeb7aa5f3f3f6094a310p@chr1:240577171..240577181, -
1.12e-45FFCP PHASE1:Hg19::chr1:240577171..240577181,-#_5a78c1832f49eeb7aa5f3f3f6094a310p@chr1:240577171..240577181, -
1.57e-45FFCP PHASE2:Hg19::chr2:11679852..11679866,+#_bb49f60ed82092c7c6f101b0616ffb05p18@GREB1
1.57e-45FFCP PHASE1:Hg19::chr2:11679852..11679866,+#_bb49f60ed82092c7c6f101b0616ffb05p18@GREB1
4.18e-45FFCP PHASE2:Hg19::chr20:52482691..52482707,-#_a689f974e5484036afc3504439cf3047p@chr20:52482691..52482707, -
4.18e-45FFCP PHASE2:Hg19::chr17:59469536..59469541,+#_a689f974e5484036afc3504439cf3047p@chr17:59469536..59469541, +
4.18e-45FFCP PHASE2:Hg19::chr13:23733194..23733206,+#_a689f974e5484036afc3504439cf3047p@chr13:23733194..23733206, +
4.18e-45FFCP PHASE1:Hg19::chr20:52482691..52482707,-#_a689f974e5484036afc3504439cf3047p@chr20:52482691..52482707, -
4.18e-45FFCP PHASE1:Hg19::chr13:23733194..23733206,+#_a689f974e5484036afc3504439cf3047p@chr13:23733194..23733206, +
4.18e-45FFCP PHASE1:Hg19::chr17:59469536..59469541,+#_a689f974e5484036afc3504439cf3047p@chr17:59469536..59469541, +
4.85e-45FFCP PHASE1:Hg19::chr5:177505250..177505293,-#_7d91309136bcd37d9c88c409fe9e4b58p@chr5:177505250..177505293, -
4.85e-45FFCP PHASE2:Hg19::chr5:177505250..177505293,-#_7d91309136bcd37d9c88c409fe9e4b58p@chr5:177505250..177505293, -
3.04e-41FFCP PHASE2:Hg19::chr15:81242191..81242201,+#_394780a73525012c841e5c13bbac4dfbp19@KIAA1199
3.04e-41FFCP PHASE1:Hg19::chr15:81242191..81242201,+#_394780a73525012c841e5c13bbac4dfbp19@KIAA1199
2.0e-40FFCP PHASE1:Hg19::chr19:15674459..15674486,+#_c7a8a3452a6dcf8df1546c1d7d1c9925p@chr19:15674459..15674486, +
2.0e-40FFCP PHASE2:Hg19::chr10:19498455..19498482,+#_c7a8a3452a6dcf8df1546c1d7d1c9925p@chr10:19498455..19498482, +
2.0e-40FFCP PHASE1:Hg19::chr10:19498455..19498482,+#_c7a8a3452a6dcf8df1546c1d7d1c9925p@chr10:19498455..19498482, +
2.0e-40FFCP PHASE2:Hg19::chr13:23583578..23583586,+#_c7a8a3452a6dcf8df1546c1d7d1c9925p@chr13:23583578..23583586, +
2.0e-40FFCP PHASE2:Hg19::chr17:65990543..65990553,-#_c7a8a3452a6dcf8df1546c1d7d1c9925p@chr17:65990543..65990553, -
2.0e-40FFCP PHASE1:Hg19::chr13:23583578..23583586,+#_c7a8a3452a6dcf8df1546c1d7d1c9925p@chr13:23583578..23583586, +
2.0e-40FFCP PHASE2:Hg19::chr1:96504230..96504238,-#_c7a8a3452a6dcf8df1546c1d7d1c9925p@chr1:96504230..96504238, -
2.0e-40FFCP PHASE1:Hg19::chr17:65990543..65990553,-#_c7a8a3452a6dcf8df1546c1d7d1c9925p@chr17:65990543..65990553, -
2.0e-40FFCP PHASE1:Hg19::chr10:9012105..9012111,+#_c7a8a3452a6dcf8df1546c1d7d1c9925p3@ENST00000456526
2.0e-40FFCP PHASE2:Hg19::chr19:15674459..15674486,+#_c7a8a3452a6dcf8df1546c1d7d1c9925p@chr19:15674459..15674486, +
2.0e-40FFCP PHASE2:Hg19::chr10:9012105..9012111,+#_c7a8a3452a6dcf8df1546c1d7d1c9925p3@ENST00000456526
2.0e-40FFCP PHASE1:Hg19::chr1:96504230..96504238,-#_c7a8a3452a6dcf8df1546c1d7d1c9925p@chr1:96504230..96504238, -
3.51e-40FFCP PHASE1:Hg19::chr3:129226494..129226510,+#_ed9dda80aba3cffb3dcd21c54ee83d1ap@chr3:129226494..129226510, +
3.51e-40FFCP PHASE2:Hg19::chr3:129226494..129226510,+#_ed9dda80aba3cffb3dcd21c54ee83d1ap@chr3:129226494..129226510, +
4.3e-40FFCP PHASE1:Hg19::chr14:38064198..38064200,-#_2001d5ca2da42f042e7d291050070cbfp11@FOXA1
4.3e-40FFCP PHASE2:Hg19::chr14:38064198..38064200,-#_2001d5ca2da42f042e7d291050070cbfp11@FOXA1
5.81e-40FFCP PHASE1:Hg19::chr15:39486488..39486494,-#_1751bc166aa06f1b031d2040d6f6a547p6@ENST00000560743
5.81e-40FFCP PHASE2:Hg19::chr7:134430175..134430178,+#_1751bc166aa06f1b031d2040d6f6a547p85@CALD1
5.81e-40FFCP PHASE2:Hg19::chr15:39486488..39486494,-#_1751bc166aa06f1b031d2040d6f6a547p6@ENST00000560743
5.81e-40FFCP PHASE1:Hg19::chr7:134430175..134430178,+#_1751bc166aa06f1b031d2040d6f6a547p85@CALD1
6.42e-40FFCP PHASE1:Hg19::chr11:72493920..72493932,-#_cb63fbc5bbe8028e9b0b7e4b08e0548bp19@STARD10
6.42e-40FFCP PHASE2:Hg19::chr11:72493920..72493932,-#_cb63fbc5bbe8028e9b0b7e4b08e0548bp19@STARD10
2.19e-38FFCP PHASE2:Hg19::chr7:73483140..73483149,+#_241ce7352fe30492f3e1eb488a244a9dp31@ELN
2.19e-38FFCP PHASE1:Hg19::chr7:73483140..73483149,+#_241ce7352fe30492f3e1eb488a244a9dp31@ELN
4.73e-38FFCP PHASE2:Hg19::chr19:18897380..18897392,+#_555ac81a287af0eafc156781bbb268cdp@chr19:18897380..18897392, +
4.73e-38FFCP PHASE1:Hg19::chr19:18897380..18897392,+#_555ac81a287af0eafc156781bbb268cdp@chr19:18897380..18897392, +
2.4e-36FFCP PHASE2:Hg19::chr8:91871545..91871568,-#_e12cfeef5139a81527d0867923431fcfp3@ENST00000517884
2.4e-36FFCP PHASE1:Hg19::chr8:91871545..91871568,-#_e12cfeef5139a81527d0867923431fcfp3@ENST00000517884
3.05e-36FFCP PHASE1:Hg19::chr3:161089631..161089635,+#_a459a6744e4633786fd9c20435d50cb7p@chr3:161089631..161089635, +
3.05e-36FFCP PHASE1:Hg19::chr11:66811898..66811900,-#_a459a6744e4633786fd9c20435d50cb7p@chr11:66811898..66811900, -
3.05e-36FFCP PHASE2:Hg19::chr11:66811898..66811900,-#_a459a6744e4633786fd9c20435d50cb7p@chr11:66811898..66811900, -
3.05e-36FFCP PHASE2:Hg19::chr19:18899427..18899432,-#_a459a6744e4633786fd9c20435d50cb7p@chr19:18899427..18899432, -
3.05e-36FFCP PHASE2:Hg19::chr3:161089631..161089635,+#_a459a6744e4633786fd9c20435d50cb7p@chr3:161089631..161089635, +
3.05e-36FFCP PHASE1:Hg19::chr19:18899427..18899432,-#_a459a6744e4633786fd9c20435d50cb7p@chr19:18899427..18899432, -
4.93e-36FFCP PHASE2:Hg19::chr15:88119982..88120003,+#_5c93bbbc94119c8f952c3a889850d5d5p2@LINC00052
4.93e-36FFCP PHASE1:Hg19::chr15:88119982..88120003,+#_5c93bbbc94119c8f952c3a889850d5d5p2@LINC00052
7.31e-36FFCP PHASE1:Hg19::chr10:8091813..8091823,+#_0efcd6b5b9abe46130b5db993348cd52p@chr10:8091813..8091823, +
7.31e-36FFCP PHASE2:Hg19::chr10:8091813..8091823,+#_0efcd6b5b9abe46130b5db993348cd52p@chr10:8091813..8091823, +
1.25e-35FFCP PHASE2:Hg19::chr1:6488281..6488301,+#_c2ba6e97f2bdeee999b79b15488e8cafp@chr1:6488281..6488301, +
1.25e-35FFCP PHASE1:Hg19::chr1:6488281..6488301,+#_c2ba6e97f2bdeee999b79b15488e8cafp@chr1:6488281..6488301, +
1.25e-35FFCP PHASE2:Hg19::chr19:18901737..18901749,-#_c2ba6e97f2bdeee999b79b15488e8cafp7@COMP
1.25e-35FFCP PHASE1:Hg19::chr19:18901737..18901749,-#_c2ba6e97f2bdeee999b79b15488e8cafp7@COMP
1.63e-35FFCP PHASE1:Hg19::chr15:39486361..39486371,-#_61b9ac3b961399e305f1811337706d62p5@ENST00000560743
1.63e-35FFCP PHASE2:Hg19::chr15:39486361..39486371,-#_61b9ac3b961399e305f1811337706d62p5@ENST00000560743

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