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{{UBERON
{{UBERON
|id=UBERON:0000925
|alt_id=UBERON:FBbt_00000125-FMA_69071-MIAA_0000175-XAO_0000090-ZFA_0000017
|name=endoderm
|namespace=
|def="Primary germ layer that lies remote from the surface of the embryo and gives rise to internal tissues such as gut." [Wikipedia:Endoderm]
|xref=AAO:0000139;;BILA:0000038;;BTO:0000800;;EFO:0002545;;EHDAA2:0000436;;EV:0100005;;FBbt:00000125;;FMA:69071;;GAID:1305;;http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray10.png/200px-Gray10.png;;MAT:0000175;;MESH:A.16.254.425.407;;MIAA:0000175;;ncithesaurus:Endoderm;;SCTID:362855003;;TAO:0000017;;VHOG:0000154;;XAO:0000090;;ZFA:0000017
|is_a=UBERON:0000923
|synonym="entoderm" RELATED []
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FBbt_00000125-FMA_69071-MIAA_0000175-XAO_0000090-ZFA_0000017
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Primary germ layer that lies remote from the surface of the embryo and gives rise to internal tissues such as gut." [Wikipedia:Endoderm]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0006595
|develops_from=UBERON:0006595
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000925
|is_a=UBERON:0000923
|is_obsolete=
|located_in=
|located_in=
|name=endoderm
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=uberon_slim;;vertebrate_core
|synonym="entoderm" RELATED []
|union_of=
|xref=AAO:0000139;;BILA:0000038;;BTO:0000800;;EFO:0002545;;EHDAA2:0000436;;EV:0100005;;FBbt:00000125;;FMA:69071;;GAID:1305;;http://upload.wikimedia.org/wikipedia/commons/c/c0/Endoderm2.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/d/df/Gray10.png/200px-Gray10.png;;MAT:0000175;;MESH:A.16.254.425.407;;MIAA:0000175;;ncithesaurus:Endoderm;;SCTID:362855003;;TAO:0000017;;VHOG:0000154;;XAO:0000090;;ZFA:0000017
}}
}}

Latest revision as of 17:11, 12 September 2014

Name:endoderm
Namespace:FANTOM
Definition:"Primary germ layer that lies remote from the surface of the embryo and gives rise to internal tissues such as gut." [Wikipedia:Endoderm]
Xrefs:
links:

AAO:0000139
BILA:0000038
BTO:0000800
EFO:0002545
EHDAA2:0000436
EV:0100005
FBbt:00000125
FMA:69071
GAID:1305
[ Endoderm2.png Endoderm2.png]
[ 200px-Gray10.png 200px-Gray10.png]
MAT:0000175
MESH:A.16.254.425.407
MIAA:0000175
ncithesaurus:Endoderm
SCTID:362855003
TAO:0000017
VHOG:0000154
XAO:0000090

ZFA:0000017
Synonyms: "entoderm" RELATED []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FBbt_00000125-FMA_69071-MIAA_0000175-XAO_0000090-ZFA_0000017
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000923(germ layer)
develops_from:UBERON:0006595(presumptive endoderm)



Children

is a:UBERON:0009550 (endoderm of foregut-midgut junction)
develops from:UBERON:0000077 (mixed endoderm/mesoderm-derived structure),UBERON:0000078 (mixed ectoderm/mesoderm/endoderm-derived structure),UBERON:0001040 (yolk sac),UBERON:0003258 (endoderm of foregut),UBERON:0003921 (pancreas primordium),UBERON:0004119 (endoderm-derived structure),UBERON:0004185 (endodermal part of digestive tract),UBERON:0004340 (allantois),UBERON:0005911 (endo-epithelium),UBERON:0007026 (primitive gut),UBERON:0007690 (early pharyngeal endoderm),UBERON:0009722 (entire pharyngeal arch endoderm)
part of:CL:0000223 (endodermal cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000925 (endoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.25e-39FFCP PHASE1:Hg19::chr14:38064429..38064486,-#_8f850b2c5f260e580f9443280c4c2989p1@FOXA1
5.25e-39FFCP PHASE2:Hg19::chr14:38064429..38064486,-#_8f850b2c5f260e580f9443280c4c2989p1@FOXA1
5.41e-39FFCP PHASE1:Hg19::chr16:68269971..68270059,-#_815753a43353b6dea6a4af28710f8e95p1@ESRP2
5.41e-39FFCP PHASE2:Hg19::chr16:68269971..68270059,-#_815753a43353b6dea6a4af28710f8e95p1@ESRP2
4.26e-36FFCP PHASE1:Hg19::chr5:134369879..134369898,-#_5c5d12aa5e63834abdb7e110e73e16a4p2@PITX1
4.26e-36FFCP PHASE2:Hg19::chr5:134369879..134369898,-#_5c5d12aa5e63834abdb7e110e73e16a4p2@PITX1
7.78e-36FFCP PHASE1:Hg19::chr20:62168672..62168713,-#_88eb1d23e7de35184a9ebea4cc114f7ap1@PTK6
7.78e-36FFCP PHASE2:Hg19::chr20:62168672..62168713,-#_88eb1d23e7de35184a9ebea4cc114f7ap1@PTK6
8.3e-36FFCP PHASE2:Hg19::chr1:209825762..209825779,-#_5d0507e39f3fcfdc97814161d1a091cbp1@LAMB3
8.3e-36FFCP PHASE1:Hg19::chr1:209825762..209825779,-#_5d0507e39f3fcfdc97814161d1a091cbp1@LAMB3
1.75e-35FFCP PHASE1:Hg19::chr11:394196..394258,+#_b4db7b6c7cd14ae0968419f6164d0589p1@PKP3
1.75e-35FFCP PHASE2:Hg19::chr11:394196..394258,+#_b4db7b6c7cd14ae0968419f6164d0589p1@PKP3
2.07e-35FFCP PHASE2:Hg19::chr19:42212526..42212575,+#_22341f648422be51d5b8cda3d21ba0f0p1@CEACAM5
2.07e-35FFCP PHASE1:Hg19::chr19:42212526..42212575,+#_22341f648422be51d5b8cda3d21ba0f0p1@CEACAM5
3.2e-35FFCP PHASE2:Hg19::chr14:65409452..65409479,-#_732c696f4944951f462af15906858718p1@GPX2
3.2e-35FFCP PHASE1:Hg19::chr14:65409452..65409479,-#_732c696f4944951f462af15906858718p1@GPX2
3.67e-35FFCP PHASE1:Hg19::chr1:26503974..26504025,+#_96a378def9122d7282cba0c77ef0baafp1@CNKSR1
3.67e-35FFCP PHASE2:Hg19::chr1:26503974..26504025,+#_96a378def9122d7282cba0c77ef0baafp1@CNKSR1
2.73e-34FFCP PHASE1:Hg19::chr16:68260798..68260800,-#_1add5516461e91cdf7f5a277cb87ec2cp@chr16:68260798..68260800, -
2.73e-34FFCP PHASE2:Hg19::chr16:68260798..68260800,-#_1add5516461e91cdf7f5a277cb87ec2cp@chr16:68260798..68260800, -
3.29e-34FFCP PHASE2:Hg19::chr18:47721315..47721430,-#_3f86abb61d5303d1adde02e83595d73fp1@MYO5B
3.29e-34FFCP PHASE1:Hg19::chr18:47721315..47721430,-#_3f86abb61d5303d1adde02e83595d73fp1@MYO5B
3.5e-34FFCP PHASE2:Hg19::chr17:7164410..7164457,-#_e093c646a3cefc69c2b2f11a5991e4b3p3@CLDN7
3.5e-34FFCP PHASE1:Hg19::chr17:7164410..7164457,-#_e093c646a3cefc69c2b2f11a5991e4b3p3@CLDN7
1.73e-33FFCP PHASE2:Hg19::chr11:32851450..32851485,+#_030674465be08e31da33e8312f0abf5ap1@PRRG4
1.73e-33FFCP PHASE1:Hg19::chr11:32851450..32851485,+#_030674465be08e31da33e8312f0abf5ap1@PRRG4
3.14e-33FFCP PHASE2:Hg19::chr18:61144160..61144214,+#_802963277db5e0d6615b3fb4dde5920fp1@SERPINB5
3.14e-33FFCP PHASE1:Hg19::chr18:61144160..61144214,+#_802963277db5e0d6615b3fb4dde5920fp1@SERPINB5
3.49e-33FFCP PHASE1:Hg19::chr14:65409484..65409495,-#_7d55ecaa5106dbde87fcc743f48829c5p2@GPX2
3.49e-33FFCP PHASE2:Hg19::chr14:65409484..65409495,-#_7d55ecaa5106dbde87fcc743f48829c5p2@GPX2
4.5e-33FFCP PHASE2:Hg19::chr8:82644741..82644791,+#_75d6f14ffc6a5c2263530b68b1ff49acp2@CHMP4C
4.5e-33FFCP PHASE1:Hg19::chr8:82644741..82644791,+#_75d6f14ffc6a5c2263530b68b1ff49acp2@CHMP4C
1.62e-32FFCP PHASE2:Hg19::chr17:39942220..39942242,-#_56e2b99a85950dc012d0b4e49e5600b7p2@JUP
1.62e-32FFCP PHASE1:Hg19::chr17:39942220..39942242,-#_56e2b99a85950dc012d0b4e49e5600b7p2@JUP
5.24e-32FFCP PHASE2:Hg19::chr1:201979743..201979762,+#_74b7debc2b47a058ee2c997af8a3d958p1@ELF3
5.24e-32FFCP PHASE1:Hg19::chr1:201979743..201979762,+#_74b7debc2b47a058ee2c997af8a3d958p1@ELF3
1.23e-31FFCP PHASE2:Hg19::chr1:207206020..207206050,-#_9c0a0d07e2355e5ec0362f962cbc795dp1@C1orf116
1.23e-31FFCP PHASE1:Hg19::chr1:207206020..207206050,-#_9c0a0d07e2355e5ec0362f962cbc795dp1@C1orf116
1.54e-31FFCP PHASE1:Hg19::chr7:16844611..16844628,-#_2e0dacd63174db854d814d10d65298fep1@AGR2
1.54e-31FFCP PHASE2:Hg19::chr7:16844611..16844628,-#_2e0dacd63174db854d814d10d65298fep1@AGR2
1.75e-31FFCP PHASE1:Hg19::chr1:201368430..201368460,-#_3dcbe456c3178a50f50f1a172dc722cfp1@LAD1
1.75e-31FFCP PHASE2:Hg19::chr1:201368430..201368460,-#_3dcbe456c3178a50f50f1a172dc722cfp1@LAD1
1.77e-31FFCP PHASE2:Hg19::chr19:751122..751139,+#_e81929b59a7552bde6a90c29ed6c882bp1@C19orf21
1.77e-31FFCP PHASE1:Hg19::chr19:751122..751139,+#_e81929b59a7552bde6a90c29ed6c882bp1@C19orf21
1.83e-31FFCP PHASE1:Hg19::chrX:48916506..48916557,+#_3c82ed53152c20d1b4e8dc52abf965e1p1@CCDC120
1.83e-31FFCP PHASE2:Hg19::chrX:48916506..48916557,+#_3c82ed53152c20d1b4e8dc52abf965e1p1@CCDC120
2.28e-31FFCP PHASE2:Hg19::chr17:38657867..38657882,-#_83af40a16f3c1a95ae7224e6d4904d7ap1@TNS4
2.28e-31FFCP PHASE1:Hg19::chr17:38657867..38657882,-#_83af40a16f3c1a95ae7224e6d4904d7ap1@TNS4
2.84e-31FFCP PHASE2:Hg19::chr19:17905938..17905980,+#_b10b69a3fc4aa6007985650cca2adb97p1@B3GNT3
2.84e-31FFCP PHASE1:Hg19::chr19:17905938..17905980,+#_b10b69a3fc4aa6007985650cca2adb97p1@B3GNT3
3.29e-31FFCP PHASE1:Hg19::chr11:706219..706260,+#_c3d541961a12d9a5afe706b39d965519p1@EPS8L2
3.29e-31FFCP PHASE2:Hg19::chr11:706219..706260,+#_c3d541961a12d9a5afe706b39d965519p1@EPS8L2
4.16e-31FFCP PHASE1:Hg19::chr3:111451321..111451372,+#_d3f8dcace7b62cc719224eba4b0d4076p3@PHLDB2
4.16e-31FFCP PHASE2:Hg19::chr3:111451321..111451372,+#_d3f8dcace7b62cc719224eba4b0d4076p3@PHLDB2
5.94e-31FFCP PHASE2:Hg19::chr16:57653946..57653968,+#_37e0e0d102d1557429317e2ce7dcec7ap4@GPR56
5.94e-31FFCP PHASE1:Hg19::chr16:57653946..57653968,+#_37e0e0d102d1557429317e2ce7dcec7ap4@GPR56
1.21e-30FFCP PHASE2:Hg19::chr5:68711023..68711075,+#_0b4183ae937ea2cdcb89145f812514c9p2@MARVELD2
1.21e-30FFCP PHASE1:Hg19::chr5:68711023..68711075,+#_0b4183ae937ea2cdcb89145f812514c9p2@MARVELD2
1.74e-30FFCP PHASE2:Hg19::chr19:751104..751121,+#_8f062f89cd6434f112d06036e945eafep2@C19orf21
1.74e-30FFCP PHASE1:Hg19::chr19:751104..751121,+#_8f062f89cd6434f112d06036e945eafep2@C19orf21
2.5e-30FFCP PHASE2:Hg19::chr8:144815914..144815961,-#_f856baafe90573c7c2688a8767ab6b53p1@FAM83H
2.5e-30FFCP PHASE1:Hg19::chr8:144815914..144815961,-#_f856baafe90573c7c2688a8767ab6b53p1@FAM83H
2.54e-30FFCP PHASE2:Hg19::chr19:50084561..50084603,+#_543617d2b5acf62f04c70d59297d31d8p1@PRRG2
2.54e-30FFCP PHASE1:Hg19::chr19:50084561..50084603,+#_543617d2b5acf62f04c70d59297d31d8p1@PRRG2
4.0e-30FFCP PHASE1:Hg19::chr1:27189631..27189648,+#_74f69ec23c5d68fd741a5a04d245c998p1@SFN
4.0e-30FFCP PHASE2:Hg19::chr1:27189631..27189648,+#_74f69ec23c5d68fd741a5a04d245c998p1@SFN
4.35e-30FFCP PHASE1:Hg19::chrX:115567767..115567784,+#_3bfd0e2e0db3462324c1c811581726d8p1@SLC6A14
4.35e-30FFCP PHASE2:Hg19::chrX:115567767..115567784,+#_3bfd0e2e0db3462324c1c811581726d8p1@SLC6A14
4.53e-30FFCP PHASE2:Hg19::chr16:31147020..31147058,-#_a24246686c56dfc54bbad9cc002c904dp1@PRSS8
4.53e-30FFCP PHASE1:Hg19::chr16:31147020..31147058,-#_a24246686c56dfc54bbad9cc002c904dp1@PRSS8
5.44e-30FFCP PHASE1:Hg19::chr4:15939963..15939978,-#_ba0a23ee5cd6b670c9cc1265186a132bp1@FGFBP1
5.44e-30FFCP PHASE2:Hg19::chr4:15939963..15939978,-#_ba0a23ee5cd6b670c9cc1265186a132bp1@FGFBP1
5.82e-30FFCP PHASE1:Hg19::chr1:200864020..200864063,+#_33d4356766e859c5006052b747c9791cp1@C1orf106
5.82e-30FFCP PHASE2:Hg19::chr1:200864020..200864063,+#_33d4356766e859c5006052b747c9791cp1@C1orf106
9.01e-30FFCP PHASE1:Hg19::chr9:139379069..139379135,-#_3269850a9c13f8c973b4dfa91ae881b9p@chr9:139379069..139379135, -
9.01e-30FFCP PHASE2:Hg19::chr9:139379069..139379135,-#_3269850a9c13f8c973b4dfa91ae881b9p@chr9:139379069..139379135, -
1.06e-29FFCP PHASE2:Hg19::chr11:72492256..72492358,-#_f3275b322d081d3e17ecb2f5aef5fc5cp3@STARD10
1.06e-29FFCP PHASE2:Hg19::chr14:65409502..65409511,-#_f3275b322d081d3e17ecb2f5aef5fc5cp3@GPX2
1.06e-29FFCP PHASE1:Hg19::chr11:72492256..72492358,-#_f3275b322d081d3e17ecb2f5aef5fc5cp3@STARD10
1.06e-29FFCP PHASE1:Hg19::chr14:65409502..65409511,-#_f3275b322d081d3e17ecb2f5aef5fc5cp3@GPX2
1.32e-29FFCP PHASE1:Hg19::chr1:201368476..201368498,-#_a01a4167a01bffee17c74fd2da9096eap4@LAD1
1.32e-29FFCP PHASE2:Hg19::chr1:201368476..201368498,-#_a01a4167a01bffee17c74fd2da9096eap4@LAD1
2.3e-29FFCP PHASE1:Hg19::chr5:134369905..134369972,-#_fb0c435f243be547a3e5b3657c4d4af8p1@PITX1
2.3e-29FFCP PHASE2:Hg19::chr5:134369905..134369972,-#_fb0c435f243be547a3e5b3657c4d4af8p1@PITX1
2.62e-29FFCP PHASE2:Hg19::chr1:153588789..153588808,-#_84308e92642a72b258a1a9566258062ap1@S100A14
2.62e-29FFCP PHASE1:Hg19::chr1:153588789..153588808,-#_84308e92642a72b258a1a9566258062ap1@S100A14
3.05e-29FFCP PHASE2:Hg19::chr1:207206095..207206121,-#_1e06c14d240677362fd57c61e226beeep2@C1orf116
3.05e-29FFCP PHASE1:Hg19::chr1:207206095..207206121,-#_1e06c14d240677362fd57c61e226beeep2@C1orf116
3.1e-29FFCP PHASE2:Hg19::chr1:201979703..201979721,+#_93d1aa406c5178ef09e6a090077e443ep2@ELF3
3.1e-29FFCP PHASE1:Hg19::chr1:201979703..201979721,+#_93d1aa406c5178ef09e6a090077e443ep2@ELF3
3.71e-29FFCP PHASE1:Hg19::chr19:50084621..50084673,+#_c5cd56b33d82c725944b72b1e9d22a96p2@PRRG2
3.71e-29FFCP PHASE2:Hg19::chr19:50084621..50084673,+#_c5cd56b33d82c725944b72b1e9d22a96p2@PRRG2
4.26e-29FFCP PHASE1:Mm9::chr13:4190454..4190472,+#_319010e3a3576e9641b8be9e95464533p2@Akr1c13
4.26e-29FFCP PHASE2:Mm9::chr13:4190454..4190472,+#_319010e3a3576e9641b8be9e95464533p2@Akr1c13
5.11e-29FFCP PHASE2:Hg19::chr11:706174..706213,+#_29808264a3a919f60a455ce4a995b7a9p2@EPS8L2
5.11e-29FFCP PHASE1:Hg19::chr11:706174..706213,+#_29808264a3a919f60a455ce4a995b7a9p2@EPS8L2
5.22e-29FFCP PHASE2:Hg19::chr17:75277512..75277592,+#_6997d47b68c154292cc84e020c6c9d53p2@SEPT9
5.22e-29FFCP PHASE1:Hg19::chr17:75277512..75277592,+#_6997d47b68c154292cc84e020c6c9d53p2@SEPT9
5.95e-29FFCP PHASE1:Hg19::chr5:125706998..125707018,+#_5724e40a29bb7c1b59037a595aa7d5bfp4@GRAMD3
5.95e-29FFCP PHASE2:Hg19::chr5:125706998..125707018,+#_5724e40a29bb7c1b59037a595aa7d5bfp4@GRAMD3

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