UBERON:0001062: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0001062
|name=anatomical entity
|namespace=
|def="Biological entity that is either an individual member of a biological species or constitutes the stru...") |
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FBbt_root_00000000-FMA_62955 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [CARO:MAH, FMA:62955] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001062 | |||
|is_a= | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=anatomical entity | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Temporary placeholder for unclassified terms.[AAO]" xsd:string;;UBPROP:0000002 "relationship loss: subclass amphibian anatomical entity (AAO:0010001)[AAO]" xsd:string | |||
|subset=upper_level | |||
|synonym= | |||
|union_of= | |||
|xref=AAO:0010841;;AEO:0000000;;BILA:0000000;;CARO:0000000;;EHDAA2:0002229;;FBbt_root:00000000;;FMA:62955;;HAO:0000000;;MA:0000001;;NIF_GrossAnatomy:birnlex_6;;TAO:0100000;;TGMA:0001822;;ZFA:0100000 | |||
}} | }} | ||
Latest revision as of 17:15, 12 September 2014
| Name: | anatomical entity | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [CARO:MAH, FMA:62955] | ||
| Xrefs: |
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| Alt_id: | UBERON:FBbt_root_00000000-FMA_62955 | ||
| Subset: | upper_level |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
NA
Children
| is a: | UBERON:0000465 (material anatomical entity),UBERON:0000466 (immaterial anatomical entity),UBERON:0004458 (body cavity or lining) |
|---|---|
| disjoint from: | UBERON:0000000 (processual entity) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10000-101A1 (Clontech Human Universal Reference Total RNA, pool1)
- 10001-101A3 (Clontech Mouse Universal Reference Total RNA, pool1)
- 10002-101A5 (SABiosciences XpressRef Human Universal Total RNA, pool1)
- 10003-101A7 (SABiosciences XpressRef Mouse Universal Total RNA, pool1)
- 10004-101A9 (chicken embryo whole body, day10 (HH37))
- 10006-101B2 (Universal RNA - Dog Normal Tissues Biochain, pool1)
- 10007-101B4 (Universal RNA - Human Normal Tissues Biochain, pool1)
- 10008-101B6 (Universal RNA - Mouse Normal Tissues Biochain, pool1)
- 10009-101B8 (Universal RNA - Rat Normal Tissues Biochain, pool1)
- 10010-101C1 (adipose tissue, adult, pool1)
... further results Mouse (Mus musculus)
- 10000-101A1 (Clontech Human Universal Reference Total RNA, pool1)
- 10001-101A3 (Clontech Mouse Universal Reference Total RNA, pool1)
- 10002-101A5 (SABiosciences XpressRef Human Universal Total RNA, pool1)
- 10003-101A7 (SABiosciences XpressRef Mouse Universal Total RNA, pool1)
- 10004-101A9 (chicken embryo whole body, day10 (HH37))
- 10006-101B2 (Universal RNA - Dog Normal Tissues Biochain, pool1)
- 10007-101B4 (Universal RNA - Human Normal Tissues Biochain, pool1)
- 10008-101B6 (Universal RNA - Mouse Normal Tissues Biochain, pool1)
- 10009-101B8 (Universal RNA - Rat Normal Tissues Biochain, pool1)
- 10010-101C1 (adipose tissue, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001062 (anatomical entity), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
Property "Property value" (as page type) with input value "UBPROP:0000001 "Temporary placeholder for unclassified terms.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: subclass amphibian anatomical entity (AAO:0010001)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
