UBERON:0001262: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_15949-MA_0002693 | ||
|comment=This class was created automatically from a combination of ontologies | |comment=This class was created automatically from a combination of ontologies | ||
|created_by= | |created_by= | ||
| | |def="An anatomical wall that is part of a intestine [Obol]." [OBOL:automatic] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001262 | |||
|is_a=UBERON:0000328 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=wall of intestine | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000160 | |part_of=UBERON:0000160 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="anatomical wall of bowel" EXACT [OBOL:automatic];;"anatomical wall of intestine" EXACT [OBOL:automatic];;"bowel anatomical wall" EXACT [OBOL:automatic];;"bowel wall" EXACT [OBOL:automatic];;"intestinal wall" EXACT [];;"intestine anatomical wall" EXACT [OBOL:automatic];;"intestine wall" EXACT [];;"wall of bowel" EXACT [OBOL:automatic] | ||
|union_of= | |||
|xref=BTO:0000647;;FMA:15949;;MA:0002693 | |||
}} | }} | ||
Latest revision as of 17:17, 12 September 2014
| Name: | wall of intestine | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "An anatomical wall that is part of a intestine [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"anatomical wall of bowel" EXACT [OBOL:automatic] "anatomical wall of intestine" EXACT [OBOL:automatic] "bowel anatomical wall" EXACT [OBOL:automatic] "bowel wall" EXACT [OBOL:automatic] "intestinal wall" EXACT [] "intestine anatomical wall" EXACT [OBOL:automatic] "intestine wall" EXACT [] "wall of bowel" EXACT [OBOL:automatic] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_15949-MA_0002693 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000328(gut wall) |
|---|---|
| part_of: | UBERON:0000160(intestine) |
Children
| is a: | UBERON:0001168 (wall of small intestine) |
|---|---|
| part of: | UBERON:0001242 (intestinal mucosa) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
- 10255-104C3
- 10256-104C4
- 10257-104C5
- 10258-104C6
- 10259-104C7
- 10260-104C8 (Ileum epithelium, treated with RANKL, day03, pool3)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
... further results Mouse (Mus musculus)
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
- 10255-104C3
- 10256-104C4
- 10257-104C5
- 10258-104C6
- 10259-104C7
- 10260-104C8 (Ileum epithelium, treated with RANKL, day03, pool3)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001262 (wall of intestine), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:35801527..35801540,+#_857e3a6d69d70eaa0fb38cc92541ff78 | p@chr9:35801527..35801540, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:35801527..35801540,+#_857e3a6d69d70eaa0fb38cc92541ff78 | p@chr9:35801527..35801540, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr1:111023361..111023366,+#_4e6f425f36472563d19b0d236cb983d4 | p1@CYMP |
| 2.4e-66 | FFCP PHASE1:Hg19::chr18:7034928..7034943,-#_4e6f425f36472563d19b0d236cb983d4 | p@chr18:7034928..7034943, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr2:127873614..127873626,+#_4e6f425f36472563d19b0d236cb983d4 | p@chr2:127873614..127873626, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr1:111023361..111023366,+#_4e6f425f36472563d19b0d236cb983d4 | p1@CYMP |
| 2.4e-66 | FFCP PHASE1:Hg19::chr13:46093155..46093164,+#_4e6f425f36472563d19b0d236cb983d4 | p@chr13:46093155..46093164, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr13:46093155..46093164,+#_4e6f425f36472563d19b0d236cb983d4 | p@chr13:46093155..46093164, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr18:7034928..7034943,-#_4e6f425f36472563d19b0d236cb983d4 | p@chr18:7034928..7034943, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr6:22919616..22919625,-#_4e6f425f36472563d19b0d236cb983d4 | p@chr6:22919616..22919625, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr6:22919616..22919625,-#_4e6f425f36472563d19b0d236cb983d4 | p@chr6:22919616..22919625, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr9:129830560..129830568,+#_4e6f425f36472563d19b0d236cb983d4 | p@chr9:129830560..129830568, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr9:129830560..129830568,+#_4e6f425f36472563d19b0d236cb983d4 | p@chr9:129830560..129830568, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr7:117329764..117329777,+#_4e6f425f36472563d19b0d236cb983d4 | p1@ENST00000429014 |
| 2.4e-66 | FFCP PHASE2:Hg19::chr7:117329764..117329777,+#_4e6f425f36472563d19b0d236cb983d4 | p1@ENST00000429014 |
| 2.4e-66 | FFCP PHASE1:Hg19::chr2:127873614..127873626,+#_4e6f425f36472563d19b0d236cb983d4 | p@chr2:127873614..127873626, + |
| 3.35e-66 | FFCP PHASE1:Hg19::chr2:205409703..205409714,+#_841ae4c2d47b68a9e23bee7d35addac6 | p@chr2:205409703..205409714, + |
| 3.35e-66 | FFCP PHASE2:Hg19::chr2:205409703..205409714,+#_841ae4c2d47b68a9e23bee7d35addac6 | p@chr2:205409703..205409714, + |
| 3.35e-66 | FFCP PHASE1:Hg19::chr1:6420713..6420725,-#_841ae4c2d47b68a9e23bee7d35addac6 | p16@ACOT7 |
| 3.35e-66 | FFCP PHASE2:Hg19::chr1:6420713..6420725,-#_841ae4c2d47b68a9e23bee7d35addac6 | p16@ACOT7 |
| 3.35e-66 | FFCP PHASE1:Hg19::chrX:21849506..21849512,-#_841ae4c2d47b68a9e23bee7d35addac6 | p@chrX:21849506..21849512, - |
| 3.35e-66 | FFCP PHASE2:Hg19::chrX:21849506..21849512,-#_841ae4c2d47b68a9e23bee7d35addac6 | p@chrX:21849506..21849512, - |
| 3.35e-66 | FFCP PHASE1:Hg19::chr20:17691468..17691474,-#_841ae4c2d47b68a9e23bee7d35addac6 | p@chr20:17691468..17691474, - |
| 3.35e-66 | FFCP PHASE2:Hg19::chr20:17691468..17691474,-#_841ae4c2d47b68a9e23bee7d35addac6 | p@chr20:17691468..17691474, - |
| 4.67e-66 | FFCP PHASE2:Hg19::chr11:89925073..89925074,+#_02cdbf82db2c1464b01c68c1af1128a8 | p@chr11:89925073..89925074, + |
| 4.67e-66 | FFCP PHASE1:Hg19::chr11:89925073..89925074,+#_02cdbf82db2c1464b01c68c1af1128a8 | p@chr11:89925073..89925074, + |
| 4.67e-66 | FFCP PHASE1:Hg19::chr2:28340361..28340371,+#_02cdbf82db2c1464b01c68c1af1128a8 | p@chr2:28340361..28340371, + |
| 4.67e-66 | FFCP PHASE2:Hg19::chr2:28340361..28340371,+#_02cdbf82db2c1464b01c68c1af1128a8 | p@chr2:28340361..28340371, + |
| 4.67e-66 | FFCP PHASE1:Hg19::chr9:138591077..138591111,-#_02cdbf82db2c1464b01c68c1af1128a8 | p@chr9:138591077..138591111, - |
| 4.67e-66 | FFCP PHASE2:Hg19::chr9:138591077..138591111,-#_02cdbf82db2c1464b01c68c1af1128a8 | p@chr9:138591077..138591111, - |
| 3.83e-60 | FFCP PHASE2:Mm9::chr16:30055801..30055806,+#_1202225f8b9bd29ad9081f62f08a966b | p@chr16:30055801..30055806, + |
| 3.83e-60 | FFCP PHASE1:Mm9::chr16:30055801..30055806,+#_1202225f8b9bd29ad9081f62f08a966b | p@chr16:30055801..30055806, + |
| 3.16e-55 | FFCP PHASE2:Mm9::chr3:122215917..122215967,-#_d58a338f63792a6a6b4ca6c959e8ecba | p@chr3:122215917..122215967, - |
| 3.16e-55 | FFCP PHASE1:Mm9::chr3:122215917..122215967,-#_d58a338f63792a6a6b4ca6c959e8ecba | p@chr3:122215917..122215967, - |
| 1.47e-53 | FFCP PHASE1:Mm9::chr18:75457242..75457248,+#_9baa89bed6272fd363cc835cc45aa5c6 | p@chr18:75457242..75457248, + |
| 1.47e-53 | FFCP PHASE2:Mm9::chr18:75457242..75457248,+#_9baa89bed6272fd363cc835cc45aa5c6 | p@chr18:75457242..75457248, + |
| 1.5e-53 | FFCP PHASE1:Mm9::chr5:135442349..135442362,-#_bc36e624b728eb23387a65a1d9cfbf97 | p@chr5:135442349..135442362, - |
| 1.5e-53 | FFCP PHASE2:Mm9::chr5:135442349..135442362,-#_bc36e624b728eb23387a65a1d9cfbf97 | p@chr5:135442349..135442362, - |
| 1.94e-53 | FFCP PHASE1:Mm9::chr8:122335239..122335244,+#_d90d14e24d624456335f914166d7e128 | p@chr8:122335239..122335244, + |
| 1.94e-53 | FFCP PHASE2:Mm9::chr8:122335239..122335244,+#_d90d14e24d624456335f914166d7e128 | p@chr8:122335239..122335244, + |
| 7.2e-52 | FFCP PHASE1:Mm9::chr18:61795043..61795050,-#_a5c43b89845f6aa59f7359efbf8aea9e | p@chr18:61795043..61795050, - |
| 7.2e-52 | FFCP PHASE2:Mm9::chr18:61795043..61795050,-#_a5c43b89845f6aa59f7359efbf8aea9e | p@chr18:61795043..61795050, - |
| 1.66e-51 | FFCP PHASE1:Mm9::chr7:4101973..4101978,-#_576f814a674b48bfb86543f9312764cb | p4@Leng9 |
| 1.66e-51 | FFCP PHASE2:Mm9::chr7:4101973..4101978,-#_576f814a674b48bfb86543f9312764cb | p4@Leng9 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:55404829..55404833,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr1:55404829..55404833, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:66794389..66794398,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr2:66794389..66794398, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:128260156..128260173,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr8:128260156..128260173, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:141499716..141499722,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr7:141499716..141499722, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:24797832..24797838,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr3:24797832..24797838, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:97958802..97958804,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr7:97958802..97958804, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:198324742..198324745,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr1:198324742..198324745, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chrX:138909080..138909093,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chrX:138909080..138909093, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr4:157174324..157174332,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr4:157174324..157174332, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:43616324..43616335,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr2:43616324..43616335, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr16:19661585..19661596,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr16:19661585..19661596, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:32790683..32790693,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr13:32790683..32790693, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:140054665..140054678,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr3:140054665..140054678, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr12:65466889..65466894,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr12:65466889..65466894, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:8389389..8389429,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr6:8389389..8389429, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr10:24726466..24726472,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr10:24726466..24726472, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:5491081..5491106,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr6:5491081..5491106, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:127817393..127817400,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr8:127817393..127817400, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:127449395..127449424,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr8:127449395..127449424, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:55404829..55404833,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr1:55404829..55404833, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr15:45950558..45950561,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr15:45950558..45950561, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:66794389..66794398,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr2:66794389..66794398, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chrX:42162203..42162241,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chrX:42162203..42162241, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr4:169559850..169559856,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr4:169559850..169559856, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr5:57619538..57619575,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr5:57619538..57619575, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:198324742..198324745,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr1:198324742..198324745, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:8389389..8389429,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr6:8389389..8389429, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr10:2328652..2328660,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr10:2328652..2328660, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:128418747..128418756,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr8:128418747..128418756, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:43616324..43616335,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr2:43616324..43616335, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr16:19661585..19661596,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr16:19661585..19661596, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr4:157174023..157174034,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr4:157174023..157174034, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr14:22850283..22850310,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr14:22850283..22850310, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:107667666..107667673,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr8:107667666..107667673, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr4:169559850..169559856,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr4:169559850..169559856, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:128691603..128691614,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr8:128691603..128691614, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:163302793..163302800,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr2:163302793..163302800, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:87232419..87232430,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr7:87232419..87232430, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr11:63153941..63153942,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr11:63153941..63153942, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr14:76289395..76289406,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr14:76289395..76289406, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:87232406..87232409,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr7:87232406..87232409, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:148165064..148165071,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr3:148165064..148165071, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr15:60749901..60749904,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr15:60749901..60749904, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr9:98505341..98505348,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr9:98505341..98505348, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:148148505..148148515,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr2:148148505..148148515, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:54830821..54830841,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr13:54830821..54830841, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr10:2328652..2328660,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr10:2328652..2328660, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:127568784..127568794,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p6@ENST00000524320 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr5:71987749..71987774,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr5:71987749..71987774, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr4:157174023..157174034,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr4:157174023..157174034, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:93128331..93128338,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr1:93128331..93128338, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:128691603..128691614,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr8:128691603..128691614, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:66354424..66354472,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr3:66354424..66354472, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:163302793..163302800,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr2:163302793..163302800, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:99425711..99425716,-#_e3f4ae0417f6c971b473e930dbc3ba2c | p1@ENST00000518956 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:127438794..127438800,+#_e3f4ae0417f6c971b473e930dbc3ba2c | p@chr8:127438794..127438800, + |
