UBERON:0001359: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0001359
|name=cerebrospinal fluid
|namespace=
|def="Transudate contained in the subarachnoid space.[FMA]" [FMA:FMA, Wikipedia:Cerebrospinal_fluid]
|xr...") |
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{{UBERON | {{UBERON | ||
|alt_id=UBERON:FMA_20935-MA_0002503 | |alt_id=UBERON:FMA_20935-MA_0002503 | ||
| | |comment=AO notes: the FMA def states that this is subarachnoid spaces only. ZFA def states subarachnoid spaces and brain ventricles, but not SC (and has part_of to brain). Circulation: It circulates from the lateral ventricles to the foramen of Monro (Interventricular foramen), third ventricle, aqueduct of Sylvius (Cerebral aqueduct), fourth ventricle, foramen of Magendie (Median aperture) and foramina of Luschka (Lateral apertures), subarachnoid space over brain and spinal cord. It should be noted that the CSF moves in a pulsatile manner throughout the CSF system with nearly zero net flow. CSF is reabsorbed into venous sinus blood via arachnoid granulations. | ||
|created_by= | |created_by= | ||
| | |def="a clear, colorless, bodily fluid, that occupies the subarachnoid space and the ventricular system around and inside the brain and spinal cord." [Wikipedia:Cerebrospinal_fluid] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0002307 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001359 | |||
|is_a=UBERON:0007779 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=cerebrospinal fluid | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Portion of organism substance that is a clear fluid that occupies the subarachnoid space and the ventricular system around and inside the brain.[TAO]" xsd:string | |||
|subset=uberon_slim;;vertebrate_core | |||
|synonym="cerebral spinal fluid" EXACT [ZFA:0001626];;"CSF" EXACT [];;"liquor cerebrospinalis" RELATED [Wikipedia:Cerebrospinal_fluid];;"spinal fluid" RELATED [BTO:0000237] | |||
|union_of= | |||
|xref=BTO:0000237;;EFO:0000329;;ENVO:02000029;;EV:0100311;;FMA:20935;;GAID:1181;;MA:0002503;;MAT:0000499;;MESH:A.12.207.268;;ncithesaurus:Cerebrospinal_Fluid;;NIF_GrossAnatomy:birnlex_1798;;TAO:0002184;;VHOG:0001278;;ZFA:0001626 | |||
}} | }} | ||
Latest revision as of 17:17, 12 September 2014
| Name: | cerebrospinal fluid | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "a clear, colorless, bodily fluid, that occupies the subarachnoid space and the ventricular system around and inside the brain and spinal cord." [Wikipedia:Cerebrospinal_fluid] | ||
| Xrefs: |
| ||
| Synonyms: |
"cerebral spinal fluid" EXACT [ZFA:0001626] "CSF" EXACT [] "liquor cerebrospinalis" RELATED [Wikipedia:Cerebrospinal_fluid] "spinal fluid" RELATED [BTO:0000237] | ||
| Comments: | AO notes: the FMA def states that this is subarachnoid spaces only. ZFA def states subarachnoid spaces and brain ventricles, but not SC (and has part_of to brain). Circulation: It circulates from the lateral ventricles to the foramen of Monro (Interventricular foramen), third ventricle, aqueduct of Sylvius (Cerebral aqueduct), fourth ventricle, foramen of Magendie (Median aperture) and foramina of Luschka (Lateral apertures), subarachnoid space over brain and spinal cord. It should be noted that the CSF moves in a pulsatile manner throughout the CSF system with nearly zero net flow. CSF is reabsorbed into venous sinus blood via arachnoid granulations. | ||
| Alt_id: | UBERON:FMA_20935-MA_0002503 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0007779(transduate) |
|---|---|
| develops_from: | UBERON:0002307(choroid plexus of lateral ventricle) |
Children
| derives from: | FF:0011151 (human cerebrospinal fluid sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10266-104D5
- 10294-104G6 (cerebrospinal fluid, donor2)
- 10322-105A7
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001359 (cerebrospinal fluid), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of organism substance that is a clear fluid that occupies the subarachnoid space and the ventricular system around and inside the brain.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
