UBERON:0001560: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0001560
|name=neck of organ
|namespace=
|def=
|xref=FMA:45733
|is_a=UBERON:0000064
|synonym="organ neck" EXACT []
|comment=
|alt_id=UBERON:FMA_457...") |
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_45733-MA_0000589 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001560 | |||
|is_a=UBERON:0000064 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=neck of organ | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset= | |||
|synonym="organ neck" EXACT [] | |||
|union_of= | |||
|xref=FMA:45733 | |||
}} | }} |
Latest revision as of 17:19, 12 September 2014
Name: | neck of organ | |
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Namespace: | FANTOM | |
Xrefs: |
| |
Synonyms: | "organ neck" EXACT [] | |
Alt_id: | UBERON:FMA_45733-MA_0000589 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000064(organ part) |
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Children
is a: | UBERON:0000002 (uterine cervix) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10013-101C4 (cervix, adult, pool1)
- 10431-106D8 (epidermoid carcinoma cell line:Ca Ski)
- 10530-107F8
- 10552-107I3 (cervical cancer cell line:D98-AH2)
- 10553-107I4 (cervical cancer cell line:ME-180)
- 10589-108D4 (argyrophil small cell carcinoma cell line:TC-YIK)
- 10598-108E4
- 10655-109B7
- 10754-110D7
- 10755-110D8
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001560 (neck of organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data