UBERON:0001851: Difference between revisions
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|located_in= | |located_in= | ||
|name=cortex | |name=cortex | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:21, 12 September 2014
| Name: | cortex | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Outermost layer of an organ[WP]." [Wikipedia:Cortex_(anatomy)] | ||
| Xrefs: |
| ||
| Comments: | This class is used in a very general sense | ||
| Alt_id: | UBERON:FMA_61109-XAO_0000216 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000064(organ part) |
|---|
Children
| is a: | UBERON:0001225 (cortex of kidney),UBERON:0001235 (adrenal cortex) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10493-107B7 (mesothelioma cell line:ACC-MESO-1)
- 10494-107B8 (mesothelioma cell line:ACC-MESO-4)
- 10810-111A9 (adrenal cortex adenocarcinoma cell line:SW-13)
- 11514-119H2 (Renal Glomerular Endothelial Cells, donor1)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11516-119H4 (Renal Cortical Epithelial Cells, donor1)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11590-120G6 (Alveolar Epithelial Cells, donor2)
- 11594-120H1 (Renal Glomerular Endothelial Cells, donor2)
- 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
... further results Mouse (Mus musculus)
- 10493-107B7 (mesothelioma cell line:ACC-MESO-1)
- 10494-107B8 (mesothelioma cell line:ACC-MESO-4)
- 10810-111A9 (adrenal cortex adenocarcinoma cell line:SW-13)
- 11514-119H2 (Renal Glomerular Endothelial Cells, donor1)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11516-119H4 (Renal Cortical Epithelial Cells, donor1)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11590-120G6 (Alveolar Epithelial Cells, donor2)
- 11594-120H1 (Renal Glomerular Endothelial Cells, donor2)
- 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001851 (cortex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.62e-46 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_19f29cc3a4ac6839a4c94a5b08dac32c | p@chr2:693380..693398, + |
| 2.62e-46 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_19f29cc3a4ac6839a4c94a5b08dac32c | p@chr2:693380..693398, + |
| 7.47e-44 | FFCP PHASE1:Mm9::chr2:121125219..121125237,+#_dd1393f275117ddd64e14f6df803ddce | p@chr2:121125219..121125237, + |
| 7.47e-44 | FFCP PHASE1:Mm9::chr13:42799452..42799454,+#_dd1393f275117ddd64e14f6df803ddce | p@chr13:42799452..42799454, + |
| 7.47e-44 | FFCP PHASE2:Mm9::chr2:121125219..121125237,+#_dd1393f275117ddd64e14f6df803ddce | p@chr2:121125219..121125237, + |
| 7.47e-44 | FFCP PHASE2:Mm9::chr13:42799452..42799454,+#_dd1393f275117ddd64e14f6df803ddce | p@chr13:42799452..42799454, + |
| 1.83e-41 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_3d3a609c9376b2498ebee048cced6cb1 | p7@HOXA10 |
| 1.83e-41 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_3d3a609c9376b2498ebee048cced6cb1 | p7@HOXA10 |
| 2.9e-40 | FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_b275fa55781d89b493eb0cd21b0d6c15 | p2@PLA2G2F |
| 2.9e-40 | FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_b275fa55781d89b493eb0cd21b0d6c15 | p2@PLA2G2F |
| 3.14e-40 | FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_b342c68cd0ec1bcb14abedec7add0b3f | p@chr5:74244100..74244117, + |
| 3.14e-40 | FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_b342c68cd0ec1bcb14abedec7add0b3f | p@chr5:74244100..74244117, + |
| 8.64e-38 | FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_066b981cd2a9279169c24bc45b915b93 | p6@LRRN4 |
| 8.64e-38 | FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_066b981cd2a9279169c24bc45b915b93 | p6@LRRN4 |
| 4.37e-33 | FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_c133c9d6c864c1e16c9eab6cb4cc8f55 | p@chr16:86768403..86768437, + |
| 4.37e-33 | FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_c133c9d6c864c1e16c9eab6cb4cc8f55 | p@chr16:86768403..86768437, + |
| 5.17e-33 | FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_0f790eb1acaab601989f19c63a3c8757 | p4@MEGF11 |
| 5.17e-33 | FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_0f790eb1acaab601989f19c63a3c8757 | p4@MEGF11 |
| 1.41e-32 | FFCP PHASE2:Hg19::chr20:6034828..6034857,-#_78a8d3e749da6e25d858dbda89d1bf48 | p5@LRRN4 |
| 1.41e-32 | FFCP PHASE1:Hg19::chr20:6034828..6034857,-#_78a8d3e749da6e25d858dbda89d1bf48 | p5@LRRN4 |
| 2.19e-32 | FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_5fe1260cf89e32319a575a490ff512f6 | p1@ENST00000413103 |
| 2.19e-32 | FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_5fe1260cf89e32319a575a490ff512f6 | p1@ENST00000413103 |
| 1.24e-31 | FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_1c4b0d581f61600282f958f210fcdc3a | p@chr7:140227303..140227330, - |
| 1.24e-31 | FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_1c4b0d581f61600282f958f210fcdc3a | p@chr7:140227303..140227330, - |
| 1.28e-31 | FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_d0a061895c2689d287b3d40e1aab208f | p3@PAX2 |
| 1.28e-31 | FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_d0a061895c2689d287b3d40e1aab208f | p3@PAX2 |
| 2.16e-31 | FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_5317dea0abbf321056dedcc588e25c2a | p@chr18:3456189..3456200, + |
| 2.16e-31 | FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_5317dea0abbf321056dedcc588e25c2a | p@chr18:3456189..3456200, + |
| 3.34e-31 | FFCP PHASE2:Hg19::chr20:6034672..6034714,-#_66062a0b7a15ccfff02a66e34df0b015 | p2@LRRN4 |
| 3.34e-31 | FFCP PHASE1:Hg19::chr20:6034672..6034714,-#_66062a0b7a15ccfff02a66e34df0b015 | p2@LRRN4 |
| 4.51e-31 | FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_3ec3482227165cbc9056a005ba0fa686 | p7@LRRN4 |
| 4.51e-31 | FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_3ec3482227165cbc9056a005ba0fa686 | p7@LRRN4 |
| 1.31e-30 | FFCP PHASE2:Hg19::chr6:30890456..30890482,+#_3827c04dc085b1d89827595408c18adf | p11@VARS2 |
| 1.31e-30 | FFCP PHASE1:Hg19::chr6:30890456..30890482,+#_3827c04dc085b1d89827595408c18adf | p11@VARS2 |
| 1.81e-30 | FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_df00d3202a6224980a2cc9812369cb3e | p@chr2:120409486..120409492, + |
| 1.81e-30 | FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_df00d3202a6224980a2cc9812369cb3e | p@chr2:120409486..120409492, + |
| 2.45e-30 | FFCP PHASE2:Hg19::chr20:6031540..6031548,-#_19c033ceb75b48159318749993b7c646 | p@chr20:6031540..6031548, - |
| 2.45e-30 | FFCP PHASE1:Hg19::chr20:6031540..6031548,-#_19c033ceb75b48159318749993b7c646 | p@chr20:6031540..6031548, - |
| 5.62e-30 | FFCP PHASE1:Mm9::chr3:67868320..67868329,+#_64abea5b910adbe8f9a0d14034edfa83 | p16@Schip1 |
| 5.62e-30 | FFCP PHASE2:Mm9::chr3:67868320..67868329,+#_64abea5b910adbe8f9a0d14034edfa83 | p16@Schip1 |
| 7.99e-30 | FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_01df0203a14a7aed37d53757f991a0c0 | p3@LRRN4 |
| 7.99e-30 | FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_01df0203a14a7aed37d53757f991a0c0 | p3@LRRN4 |
| 1.1e-29 | FFCP PHASE2:Mm9::chr14:66589447..66589458,+#_1cfb4c57d95eb27af4376095072e4864 | p15@Clu |
| 1.1e-29 | FFCP PHASE1:Mm9::chr19:4711358..4711361,+#_1cfb4c57d95eb27af4376095072e4864 | p19@Spnb3 |
| 1.1e-29 | FFCP PHASE1:Mm9::chr11:68904990..68905000,+#_1cfb4c57d95eb27af4376095072e4864 | p@chr11:68904990..68905000, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr10:74787727..74787734,+#_1cfb4c57d95eb27af4376095072e4864 | p@chr10:74787727..74787734, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr11:68904990..68905000,+#_1cfb4c57d95eb27af4376095072e4864 | p@chr11:68904990..68905000, + |
| 1.1e-29 | FFCP PHASE1:Mm9::chr14:66589447..66589458,+#_1cfb4c57d95eb27af4376095072e4864 | p15@Clu |
| 1.1e-29 | FFCP PHASE1:Mm9::chr5:14677450..14677452,+#_1cfb4c57d95eb27af4376095072e4864 | p@chr5:14677450..14677452, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr5:14677450..14677452,+#_1cfb4c57d95eb27af4376095072e4864 | p@chr5:14677450..14677452, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr10:74787727..74787734,+#_1cfb4c57d95eb27af4376095072e4864 | p@chr10:74787727..74787734, + |
| 1.1e-29 | FFCP PHASE2:Mm9::chr19:4711358..4711361,+#_1cfb4c57d95eb27af4376095072e4864 | p19@Spnb3 |
| 1.64e-29 | FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_67fdc08b1b4138d3187e60e57ce43f4d | p@chr1:1100457..1100470, + |
| 1.64e-29 | FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_67fdc08b1b4138d3187e60e57ce43f4d | p@chr1:1100457..1100470, + |
| 2.04e-29 | FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_dca85e017ce52c51da6e596828ce0ec5 | p2@AB527789 |
| 2.04e-29 | FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_dca85e017ce52c51da6e596828ce0ec5 | p2@AB527789 |
| 4.95e-28 | FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_9712923f191bcf7b328a2eeda4b25453 | p4@AIF1L |
| 4.95e-28 | FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_9712923f191bcf7b328a2eeda4b25453 | p4@AIF1L |
| 6.27e-28 | FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_5971d9541c951a6c67d16b944f031c51 | p3@HNF1B |
| 6.27e-28 | FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_5971d9541c951a6c67d16b944f031c51 | p3@HNF1B |
| 9.11e-28 | FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_4702e7158b5c8a941b0a9de110ec741d | p2@PAX2 |
| 9.11e-28 | FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_4702e7158b5c8a941b0a9de110ec741d | p2@PAX2 |
| 1.1e-27 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_368b18d9445aab8b8709a55c1fa49596 | p4@PAX2 |
| 1.1e-27 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_368b18d9445aab8b8709a55c1fa49596 | p4@PAX2 |
| 1.82e-27 | FFCP PHASE2:Hg19::chr5:167718782..167718785,+#_f2766c2bf6b4f7a40c257eefa3d1feb5 | p10@WWC1 |
| 1.82e-27 | FFCP PHASE1:Hg19::chr5:167718782..167718785,+#_f2766c2bf6b4f7a40c257eefa3d1feb5 | p10@WWC1 |
| 6.42e-26 | FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_550bc94a50897d8b6c0aaae7c67df954 | p2@CLDN6 |
| 6.42e-26 | FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_550bc94a50897d8b6c0aaae7c67df954 | p2@CLDN6 |
| 1.1e-25 | FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_d9335292dda9476a1a55b2bdd45e1a1f | p@chr7:140227349..140227360, - |
| 1.1e-25 | FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_d9335292dda9476a1a55b2bdd45e1a1f | p@chr7:140227349..140227360, - |
| 2.38e-25 | FFCP PHASE1:Hg19::chr17:27970385..27970397,-#_7fdb0f1df4b65befb9258c461c114c3f | p@chr17:27970385..27970397, - |
| 2.38e-25 | FFCP PHASE2:Hg19::chr17:27970385..27970397,-#_7fdb0f1df4b65befb9258c461c114c3f | p@chr17:27970385..27970397, - |
| 1.31e-24 | FFCP PHASE2:Hg19::chr6:24358114..24358125,-#_31660bec895135d2cf8263f4dd45e027 | p4@DCDC2 |
| 1.31e-24 | FFCP PHASE1:Hg19::chr6:24358114..24358125,-#_31660bec895135d2cf8263f4dd45e027 | p4@DCDC2 |
| 1.65e-24 | FFCP PHASE2:Hg19::chr20:6033140..6033181,-#_6fe0e186632e4fe5f626c2c1c12eba99 | p1@AB527789 |
| 1.65e-24 | FFCP PHASE1:Hg19::chr20:6033140..6033181,-#_6fe0e186632e4fe5f626c2c1c12eba99 | p1@AB527789 |
| 2.09e-24 | FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_ad7747ac634ef19e5cfffb4497de2ee7 | p@chr15:85403302..85403304, + |
| 2.09e-24 | FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_ad7747ac634ef19e5cfffb4497de2ee7 | p@chr15:85403302..85403304, + |
| 4.61e-24 | FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_de30332a0a82a216ab083612859519af | p2@B3GALT5 |
| 4.61e-24 | FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_de30332a0a82a216ab083612859519af | p2@B3GALT5 |
| 7.08e-24 | FFCP PHASE1:Hg19::chr19:50390837..50390847,+#_94a0aa4ea4b373d6f06de96b1fb06c06 | p@chr19:50390837..50390847, + |
| 7.08e-24 | FFCP PHASE2:Hg19::chr19:50390837..50390847,+#_94a0aa4ea4b373d6f06de96b1fb06c06 | p@chr19:50390837..50390847, + |
| 1.16e-23 | FFCP PHASE2:Hg19::chr17:171147..171161,+#_43abf95bb0188ba086704eb8ee680974 | p@chr17:171147..171161, + |
| 1.16e-23 | FFCP PHASE1:Hg19::chr17:171147..171161,+#_43abf95bb0188ba086704eb8ee680974 | p@chr17:171147..171161, + |
| 3.23e-23 | FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_603669b75d3eeea269eea2c4474d87f0 | p1@ENST00000418041, p1@ENST00000443104 |
| 3.23e-23 | FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_603669b75d3eeea269eea2c4474d87f0 | p1@ENST00000418041, p1@ENST00000443104 |
| 3.84e-23 | FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_b8882288022be667bc1bcfee601102ff | p@chr21:46826248..46826282, - |
| 3.84e-23 | FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_b8882288022be667bc1bcfee601102ff | p@chr21:46826248..46826282, - |
| 5.07e-23 | FFCP PHASE2:Mm9::chr19:8742249..8742252,+#_db3fa9430ce3047000b0102f89a4464d | p@chr19:8742249..8742252, + |
| 5.07e-23 | FFCP PHASE1:Mm9::chr19:8742249..8742252,+#_db3fa9430ce3047000b0102f89a4464d | p@chr19:8742249..8742252, + |
| 7.12e-23 | FFCP PHASE2:Hg19::chr19:1826957..1826984,-#_d36859cbd4ff3cba911b9e9ff417c360 | p@chr19:1826957..1826984, - |
| 7.12e-23 | FFCP PHASE1:Hg19::chr19:1826957..1826984,-#_d36859cbd4ff3cba911b9e9ff417c360 | p@chr19:1826957..1826984, - |
| 8.39e-23 | FFCP PHASE2:Mm9::chr9:44946379..44946388,+#_75047da9c229d2b67491233c8cd93244 | p20@Scn4b |
| 8.39e-23 | FFCP PHASE1:Mm9::chr9:44946379..44946388,+#_75047da9c229d2b67491233c8cd93244 | p20@Scn4b |
| 8.39e-23 | FFCP PHASE1:Mm9::chr10:74787713..74787724,+#_75047da9c229d2b67491233c8cd93244 | p@chr10:74787713..74787724, + |
| 8.39e-23 | FFCP PHASE1:Mm9::chr9:37363230..37363241,+#_75047da9c229d2b67491233c8cd93244 | p@chr9:37363230..37363241, + |
| 8.39e-23 | FFCP PHASE2:Mm9::chr10:74787713..74787724,+#_75047da9c229d2b67491233c8cd93244 | p@chr10:74787713..74787724, + |
| 8.39e-23 | FFCP PHASE2:Mm9::chr9:37363230..37363241,+#_75047da9c229d2b67491233c8cd93244 | p@chr9:37363230..37363241, + |
| 9.29e-23 | FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_2dffbdd08c65899f96ab0ce3cbfd7d59 | p3@AIF1L |
| 9.29e-23 | FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_2dffbdd08c65899f96ab0ce3cbfd7d59 | p3@AIF1L |
