UBERON:0002104: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_7191-MA_0002444-ZFA_0001127 | ||
|comment=This class was created automatically from a combination of ontologies | |comment=This class was created automatically from a combination of ontologies | ||
|created_by= | |created_by= | ||
| | |def="." [Wikipedia:Visual_system] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002104 | |||
|is_a=UBERON:0001032 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=visual system | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0002105;;UBPROP:0000001 "The sensory system used for sight.[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0002105;;UBPROP:0000001 "The sensory system used for sight.[AAO]" xsd:string | ||
| | |subset=uberon_slim;;vertebrate_core | ||
| | |synonym="visual organ system" EXACT [] | ||
|union_of= | |||
|xref=AAO:0000632;;FMA:7191;;MA:0002444;;ncithesaurus:Visual_System;;NIF_GrossAnatomy:FMAID_7191;;OpenCyc:Mx4rvViCtpwpEbGdrcN5Y29ycA;;SCTID:281831001;;TAO:0001127;;XAO:0003198;;ZFA:0001127 | |||
}} | }} | ||
Latest revision as of 17:26, 12 September 2014
| Name: | visual system | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "." [Wikipedia:Visual_system] | ||
| Xrefs: |
| ||
| Synonyms: | "visual organ system" EXACT [] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_7191-MA_0002444-ZFA_0001127 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001032(sensory system) |
|---|
Children
| part of: | UBERON:0000941 (cranial nerve II),UBERON:0000970 (eye),UBERON:0004904 (nerve connecting eye with brain) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10030-101E3 (retina, adult, pool1)
- 10054-101G9 (eye, fetal, donor1)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10269-104D8
- 10270-104D9
- 10271-104E1
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10277-104E7 (optic nerve, donor1)
- 10296-104G8
- 10297-104G9 (eye - muscle superior, donor2)
... further results Mouse (Mus musculus)
- 10030-101E3 (retina, adult, pool1)
- 10054-101G9 (eye, fetal, donor1)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10269-104D8
- 10270-104D9
- 10271-104E1
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10277-104E7 (optic nerve, donor1)
- 10296-104G8
- 10297-104G9 (eye - muscle superior, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002104 (visual system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p@chr17:31818263..31818276, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p@chr11:77532391..77532408, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p@chr3:129525389..129525400, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p1@Mir184 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p6@Celf1 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p@chr17:31817987..31818013, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p@chr11:77532283..77532316, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p@chr16:21743134..21743139, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p5@Zfp365 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p@chr10:127668442..127668453, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p8@Osbp2 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p@chr17:31818106..31818119, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p1@E130218I03Rik |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p8@Osbp2 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p3@Osbp2 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p@chr17:31818263..31818276, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p@chr11:77532391..77532408, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p1@E130218I03Rik |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p@chr17:31815126..31815139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p@chr17:31815126..31815139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p5@Zfp365 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p@chr3:129525389..129525400, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p1@Mir184 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p4@Dct |
| 1.31e-86 | FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p@chr16:21743134..21743139, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p@chr10:127668442..127668453, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p3@Osbp2 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p@chr17:31818106..31818119, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p6@Celf1 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p@chr11:77532283..77532316, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p@chr17:31817987..31818013, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_b1d61ae1e3ad5b890b1d884a6f62f5e9 | p4@Dct |
| 3.94e-79 | FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_26600325f04617b5b2b5b79eecee9412 | p10@SIX3 |
| 3.94e-79 | FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_26600325f04617b5b2b5b79eecee9412 | p10@SIX3 |
| 2.3e-78 | FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_bab7acc6b4bab0150a140a302bac9bdf | p@chr7:64675015..64675028, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_bab7acc6b4bab0150a140a302bac9bdf | p3@LOC100504989, p3@Timeless |
| 2.3e-78 | FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_bab7acc6b4bab0150a140a302bac9bdf | p@chr7:64675015..64675028, + |
| 2.3e-78 | FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_bab7acc6b4bab0150a140a302bac9bdf | p3@LOC100504989, p3@Timeless |
| 2.82e-78 | FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_b452dec6668dc92b7a12a259287a165f | p6@Pax6 |
| 2.82e-78 | FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_b452dec6668dc92b7a12a259287a165f | p@chr6:97891135..97891147, + |
| 2.82e-78 | FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_b452dec6668dc92b7a12a259287a165f | p@chr6:97891135..97891147, + |
| 2.82e-78 | FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_b452dec6668dc92b7a12a259287a165f | p6@Pax6 |
| 3.46e-78 | FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_acd9740fa39f3796fafb3bef1e90b816 | p1@4933429O19Rik |
| 3.46e-78 | FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_acd9740fa39f3796fafb3bef1e90b816 | p1@4933429O19Rik |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112690729..112690741,+#_68da2ef74d650f130a3759934aadb399 | p@chr5:112690729..112690741, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112696408..112696421,-#_68da2ef74d650f130a3759934aadb399 | p@chr5:112696408..112696421, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31818215..31818239,-#_68da2ef74d650f130a3759934aadb399 | p@chr17:31818215..31818239, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:127668480..127668491,+#_68da2ef74d650f130a3759934aadb399 | p@chr10:127668480..127668491, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr14:35413322..35413333,-#_68da2ef74d650f130a3759934aadb399 | p1@Opn4 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:65147201..65147212,-#_68da2ef74d650f130a3759934aadb399 | p@chr1:65147201..65147212, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112688342..112688357,+#_68da2ef74d650f130a3759934aadb399 | p@chr5:112688342..112688357, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr14:52730585..52730607,+#_68da2ef74d650f130a3759934aadb399 | p1@Rpgrip1 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113504891..113504916,-#_68da2ef74d650f130a3759934aadb399 | p@chr5:113504891..113504916, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr10:127668799..127668810,+#_68da2ef74d650f130a3759934aadb399 | p5@LOC100504989, p5@Timeless |
| 4.97e-77 | FFCP PHASE1:Mm9::chr6:85969237..85969247,+#_68da2ef74d650f130a3759934aadb399 | p@chr6:85969237..85969247, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr3:129525435..129525448,-#_68da2ef74d650f130a3759934aadb399 | p2@Rrh |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112690636..112690656,+#_68da2ef74d650f130a3759934aadb399 | p@chr5:112690636..112690656, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr8:77582172..77582183,+#_68da2ef74d650f130a3759934aadb399 | p@chr8:77582172..77582183, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112690963..112690994,+#_68da2ef74d650f130a3759934aadb399 | p@chr5:112690963..112690994, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112681470..112681483,-#_68da2ef74d650f130a3759934aadb399 | p@chr5:112681470..112681483, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113506190..113506202,-#_68da2ef74d650f130a3759934aadb399 | p@chr5:113506190..113506202, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112686483..112686494,+#_68da2ef74d650f130a3759934aadb399 | p@chr5:112686483..112686494, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr2:93906955..93906973,-#_68da2ef74d650f130a3759934aadb399 | p2@Hsd17b12 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112690744..112690755,+#_68da2ef74d650f130a3759934aadb399 | p@chr5:112690744..112690755, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr6:115162924..115162933,+#_68da2ef74d650f130a3759934aadb399 | p@chr6:115162924..115162933, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112692580..112692595,+#_68da2ef74d650f130a3759934aadb399 | p@chr5:112692580..112692595, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr8:77582194..77582219,+#_68da2ef74d650f130a3759934aadb399 | p@chr8:77582194..77582219, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr17:31816514..31816526,+#_68da2ef74d650f130a3759934aadb399 | p@chr17:31816514..31816526, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113506190..113506202,-#_68da2ef74d650f130a3759934aadb399 | p@chr5:113506190..113506202, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:38092538..38092550,+#_68da2ef74d650f130a3759934aadb399 | p@chr1:38092538..38092550, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr15:36655026..36655032,+#_68da2ef74d650f130a3759934aadb399 | p@chr15:36655026..36655032, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31816514..31816526,+#_68da2ef74d650f130a3759934aadb399 | p@chr17:31816514..31816526, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr4:19208009..19208054,+#_68da2ef74d650f130a3759934aadb399 | p1@Cngb3 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:65147224..65147236,-#_68da2ef74d650f130a3759934aadb399 | p@chr1:65147224..65147236, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr16:56204438..56204451,+#_68da2ef74d650f130a3759934aadb399 | p1@Impg2 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr3:129525405..129525428,-#_68da2ef74d650f130a3759934aadb399 | p1@Rrh |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:152166537..152166579,+#_68da2ef74d650f130a3759934aadb399 | p1@Pdc |
| 4.97e-77 | FFCP PHASE1:Mm9::chr17:31818629..31818644,+#_68da2ef74d650f130a3759934aadb399 | p@chr17:31818629..31818644, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112698505..112698537,-#_68da2ef74d650f130a3759934aadb399 | p@chr5:112698505..112698537, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:93761330..93761358,-#_68da2ef74d650f130a3759934aadb399 | p1@Gm4792 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113504891..113504916,-#_68da2ef74d650f130a3759934aadb399 | p@chr5:113504891..113504916, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113507470..113507483,-#_68da2ef74d650f130a3759934aadb399 | p@chr5:113507470..113507483, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr3:129525452..129525463,-#_68da2ef74d650f130a3759934aadb399 | p3@Rrh |
| 4.97e-77 | FFCP PHASE1:Mm9::chr8:77582194..77582219,+#_68da2ef74d650f130a3759934aadb399 | p@chr8:77582194..77582219, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:65149656..65149674,-#_68da2ef74d650f130a3759934aadb399 | p2@Cryga |
| 4.97e-77 | FFCP PHASE2:Mm9::chr3:34488839..34488876,+#_68da2ef74d650f130a3759934aadb399 | p1@ENSMUST00000173365 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112692580..112692595,+#_68da2ef74d650f130a3759934aadb399 | p@chr5:112692580..112692595, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr6:85969237..85969247,+#_68da2ef74d650f130a3759934aadb399 | p@chr6:85969237..85969247, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:65147201..65147212,-#_68da2ef74d650f130a3759934aadb399 | p@chr1:65147201..65147212, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr10:127668480..127668491,+#_68da2ef74d650f130a3759934aadb399 | p@chr10:127668480..127668491, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr17:31816584..31816600,+#_68da2ef74d650f130a3759934aadb399 | p@chr17:31816584..31816600, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr11:95705150..95705170,+#_68da2ef74d650f130a3759934aadb399 | p3@Gngt2 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112688342..112688357,+#_68da2ef74d650f130a3759934aadb399 | p@chr5:112688342..112688357, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:127668686..127668697,+#_68da2ef74d650f130a3759934aadb399 | p4@LOC100504989, p4@Timeless |
| 4.97e-77 | FFCP PHASE2:Mm9::chr7:29477874..29477889,+#_68da2ef74d650f130a3759934aadb399 | p6@Fbxo27 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr14:52730585..52730607,+#_68da2ef74d650f130a3759934aadb399 | p1@Rpgrip1 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr4:19208009..19208054,+#_68da2ef74d650f130a3759934aadb399 | p1@Cngb3 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:152166537..152166579,+#_68da2ef74d650f130a3759934aadb399 | p1@Pdc |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31816584..31816600,+#_68da2ef74d650f130a3759934aadb399 | p@chr17:31816584..31816600, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113506006..113506025,-#_68da2ef74d650f130a3759934aadb399 | p@chr5:113506006..113506025, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "The sensory system used for sight.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
