Personal tools

UBERON:0002133: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0002133
|alt_id=UBERON:FMA_7233-ZFA_0005064
|name=atrioventricular valve
|anatomical_img_id=FMA:7233
|namespace=
|def="Cardiac valve which has as its parts the leaf of cardiac valve that separates the atrium from the ventricle. // The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice. <a href='ZFIN_jump?record=ZDB-PUB-010912-30'>Hu et al. 2001.</a>" [Wikipedia:Heart_valve#Atrioventricular_valves, ZFIN:curator]
|xref=EHDAA:7421;;EHDAA2:0000153;;FMA:7233;;galen:AtrioventricularValve;;MA:0002789;;OpenCyc:Mx4rfCfdorrpEduAAAACs6hRXg;;SCTID:11124005;;TAO:0005064;;VHOG:0001472;;ZFA:0005064
|is_a=UBERON:0000946
|synonym="AV valve" EXACT []
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_7233-ZFA_0005064
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Cardiac valve which has as its parts the leaf of cardiac valve that separates the atrium from the ventricle. // The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice. <a href
|subset=vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0002062
|develops_from=UBERON:0002062
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002133
|is_a=UBERON:0000946
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=atrioventricular valve
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|namespace=FANTOM
|is_obsolete=
|obo_creation_date=
|part_of=UBERON:0011820
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice. Hu et al. 2001.[TAO]" xsd:string
|subset=vertebrate_core
|synonym="AV valve" EXACT []
|union_of=
|xref=EHDAA2:0000153;;EHDAA:7421;;FMA:7233;;galen:AtrioventricularValve;;MA:0002789;;OpenCyc:Mx4rfCfdorrpEduAAAACs6hRXg;;SCTID:11124005;;TAO:0005064;;VHOG:0001472;;ZFA:0005064
}}
}}

Latest revision as of 17:26, 12 September 2014

Name:atrioventricular valve
Namespace:FANTOM
Definition:"Cardiac valve which has as its parts the leaf of cardiac valve that separates the atrium from the ventricle. // The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice. <a href
Xrefs:
links:

EHDAA2:0000153
EHDAA:7421
FMA:7233
galen:AtrioventricularValve
MA:0002789
OpenCyc:Mx4rfCfdorrpEduAAAACs6hRXg
SCTID:11124005
TAO:0005064
VHOG:0001472

ZFA:0005064
Synonyms: "AV valve" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_7233-ZFA_0005064
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000946(cardial valve)
develops_from:UBERON:0002062(endocardial cushion)
part_of:UBERON:0011820(atrioventricular region)



Children

is a:UBERON:0002134 (tricuspid valve),UBERON:0002135 (mitral valve)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002133 (atrioventricular valve), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.75e-130FFCP PHASE2:Hg19::chr1:11907265..11907271,-#_3514e6bd53d12d42f946b718a1a4e6f7p9@NPPA
1.75e-130FFCP PHASE1:Hg19::chr1:11907265..11907271,-#_3514e6bd53d12d42f946b718a1a4e6f7p9@NPPA
5.68e-99FFCP PHASE2:Hg19::chr7:25815812..25815822,-#_d69e91a2865133ddc5378df156ee2938p@chr7:25815812..25815822, -
5.68e-99FFCP PHASE1:Hg19::chr7:25815812..25815822,-#_d69e91a2865133ddc5378df156ee2938p@chr7:25815812..25815822, -
9.38e-99FFCP PHASE2:Hg19::chr12:114886577..114886589,-#_204475d646bdf24bac64490982d69faap@chr12:114886577..114886589, -
9.38e-99FFCP PHASE1:Hg19::chr12:114886577..114886589,-#_204475d646bdf24bac64490982d69faap@chr12:114886577..114886589, -
9.38e-99FFCP PHASE2:Hg19::chr12:4735761..4735787,-#_204475d646bdf24bac64490982d69faap@chr12:4735761..4735787, -
9.38e-99FFCP PHASE1:Hg19::chr12:4735761..4735787,-#_204475d646bdf24bac64490982d69faap@chr12:4735761..4735787, -
1.55e-98FFCP PHASE2:Hg19::chr7:44179972..44179982,-#_1d15adc218ff63122729a4976d01fbb4p2@MYL7
1.55e-98FFCP PHASE1:Hg19::chr1:11905830..11905839,-#_1d15adc218ff63122729a4976d01fbb4p@chr1:11905830..11905839, -
1.55e-98FFCP PHASE2:Hg19::chr15:86272097..86272099,+#_1d15adc218ff63122729a4976d01fbb4p@chr15:86272097..86272099, +
1.55e-98FFCP PHASE1:Hg19::chr5:99390735..99390743,-#_1d15adc218ff63122729a4976d01fbb4p@chr5:99390735..99390743, -
1.55e-98FFCP PHASE2:Hg19::chr10:92678409..92678410,-#_1d15adc218ff63122729a4976d01fbb4p@chr10:92678409..92678410, -
1.55e-98FFCP PHASE1:Hg19::chr7:44179972..44179982,-#_1d15adc218ff63122729a4976d01fbb4p2@MYL7
1.55e-98FFCP PHASE2:Hg19::chr1:11905830..11905839,-#_1d15adc218ff63122729a4976d01fbb4p@chr1:11905830..11905839, -
1.55e-98FFCP PHASE2:Hg19::chr7:44178491..44178498,-#_1d15adc218ff63122729a4976d01fbb4p@chr7:44178491..44178498, -
1.55e-98FFCP PHASE1:Hg19::chr10:92678409..92678410,-#_1d15adc218ff63122729a4976d01fbb4p@chr10:92678409..92678410, -
1.55e-98FFCP PHASE2:Hg19::chr5:99390735..99390743,-#_1d15adc218ff63122729a4976d01fbb4p@chr5:99390735..99390743, -
1.55e-98FFCP PHASE1:Hg19::chr15:86272097..86272099,+#_1d15adc218ff63122729a4976d01fbb4p@chr15:86272097..86272099, +
1.55e-98FFCP PHASE1:Hg19::chr7:44178491..44178498,-#_1d15adc218ff63122729a4976d01fbb4p@chr7:44178491..44178498, -
2.56e-98FFCP PHASE2:Hg19::chr7:44180643..44180652,-#_aee10342537056d0325e0f9df1f9f756p3@MYL7
2.56e-98FFCP PHASE1:Hg19::chr7:44180643..44180652,-#_aee10342537056d0325e0f9df1f9f756p3@MYL7
1.05e-79FFCP PHASE2:Hg19::chr4:187621913..187621924,-#_f0ac63966478b49cb7ecb58c7114ac45p@chr4:187621913..187621924, -
1.05e-79FFCP PHASE1:Hg19::chr4:187621913..187621924,-#_f0ac63966478b49cb7ecb58c7114ac45p@chr4:187621913..187621924, -
2.34e-79FFCP PHASE1:Hg19::chr1:20355975..20355980,-#_6cafd00350a51e260386ac207f199827p@chr1:20355975..20355980, -
2.34e-79FFCP PHASE2:Hg19::chr10:92725775..92725780,+#_6cafd00350a51e260386ac207f199827p@chr10:92725775..92725780, +
2.34e-79FFCP PHASE1:Hg19::chr8:11600049..11600059,+#_6cafd00350a51e260386ac207f199827p@chr8:11600049..11600059, +
2.34e-79FFCP PHASE2:Hg19::chr1:20355975..20355980,-#_6cafd00350a51e260386ac207f199827p@chr1:20355975..20355980, -
2.34e-79FFCP PHASE1:Hg19::chr10:92725775..92725780,+#_6cafd00350a51e260386ac207f199827p@chr10:92725775..92725780, +
2.34e-79FFCP PHASE2:Hg19::chr8:11600049..11600059,+#_6cafd00350a51e260386ac207f199827p@chr8:11600049..11600059, +
5.22e-79FFCP PHASE1:Hg19::chr2:179594587..179594597,-#_69196decc71aa35ac0c7a42993a23a44p@chr2:179594587..179594597, -
5.22e-79FFCP PHASE2:Hg19::chr2:179594587..179594597,-#_69196decc71aa35ac0c7a42993a23a44p@chr2:179594587..179594597, -
1.45e-66FFCP PHASE1:Hg19::chr1:237331032..237331036,+#_e26255eeeb90b6ee3ae0d9b6d8996136p@chr1:237331032..237331036, +
1.45e-66FFCP PHASE2:Hg19::chr1:237331032..237331036,+#_e26255eeeb90b6ee3ae0d9b6d8996136p@chr1:237331032..237331036, +
2.03e-66FFCP PHASE1:Hg19::chr14:23854202..23854211,-#_cd704aa43aee87f6c5f58a3cc71db498p@chr14:23854202..23854211, -
2.03e-66FFCP PHASE2:Hg19::chr12:114886372..114886399,-#_cd704aa43aee87f6c5f58a3cc71db498p@chr12:114886372..114886399, -
2.03e-66FFCP PHASE1:Hg19::chr12:114886372..114886399,-#_cd704aa43aee87f6c5f58a3cc71db498p@chr12:114886372..114886399, -
2.03e-66FFCP PHASE2:Hg19::chr14:23854202..23854211,-#_cd704aa43aee87f6c5f58a3cc71db498p@chr14:23854202..23854211, -
2.84e-66FFCP PHASE2:Hg19::chr13:111935498..111935509,+#_3620c1a7bfec2480961ed62f23434ff1p35@ARHGEF7
2.84e-66FFCP PHASE2:Hg19::chr22:26154300..26154303,+#_3620c1a7bfec2480961ed62f23434ff1p@chr22:26154300..26154303, +
2.84e-66FFCP PHASE1:Hg19::chr13:111935498..111935509,+#_3620c1a7bfec2480961ed62f23434ff1p35@ARHGEF7
2.84e-66FFCP PHASE1:Hg19::chr22:26154300..26154303,+#_3620c1a7bfec2480961ed62f23434ff1p@chr22:26154300..26154303, +
3.58e-57FFCP PHASE1:Hg19::chr2:179533457..179533461,-#_3ffce5a76ad6dec3a20719cc37cbe0f9p@chr2:179533457..179533461, -
3.58e-57FFCP PHASE2:Hg19::chr2:179533457..179533461,-#_3ffce5a76ad6dec3a20719cc37cbe0f9p@chr2:179533457..179533461, -
4.77e-57FFCP PHASE2:Hg19::chr3:46505137..46505149,-#_715a40433ad577005cecb2db1e2f7ce0p4@LTF
4.77e-57FFCP PHASE2:Hg19::chr1:11907940..11907947,-#_715a40433ad577005cecb2db1e2f7ce0p2@NPPA
4.77e-57FFCP PHASE1:Hg19::chrX:112324334..112324339,-#_715a40433ad577005cecb2db1e2f7ce0p@chrX:112324334..112324339, -
4.77e-57FFCP PHASE1:Hg19::chr1:11907441..11907453,-#_715a40433ad577005cecb2db1e2f7ce0p3@NPPA
4.77e-57FFCP PHASE2:Hg19::chr2:179466875..179466881,-#_715a40433ad577005cecb2db1e2f7ce0p@chr2:179466875..179466881, -
4.77e-57FFCP PHASE1:Hg19::chr3:46505137..46505149,-#_715a40433ad577005cecb2db1e2f7ce0p4@LTF
4.77e-57FFCP PHASE2:Hg19::chr1:11907441..11907453,-#_715a40433ad577005cecb2db1e2f7ce0p3@NPPA
4.77e-57FFCP PHASE1:Hg19::chr1:11907940..11907947,-#_715a40433ad577005cecb2db1e2f7ce0p2@NPPA
4.77e-57FFCP PHASE2:Hg19::chrX:112324334..112324339,-#_715a40433ad577005cecb2db1e2f7ce0p@chrX:112324334..112324339, -
4.77e-57FFCP PHASE1:Hg19::chr2:179466875..179466881,-#_715a40433ad577005cecb2db1e2f7ce0p@chr2:179466875..179466881, -
6.36e-57FFCP PHASE1:Hg19::chr2:220491902..220491915,+#_a08b9a837b4b15ec38dad369b9d54042p11@SLC4A3
6.36e-57FFCP PHASE2:Hg19::chr2:220491902..220491915,+#_a08b9a837b4b15ec38dad369b9d54042p11@SLC4A3
8.47e-57FFCP PHASE2:Hg19::chr2:179398102..179398109,-#_5276184f76069b5d8972d3c58f42119ep@chr2:179398102..179398109, -
8.47e-57FFCP PHASE2:Hg19::chr3:52485281..52485292,-#_5276184f76069b5d8972d3c58f42119ep@chr3:52485281..52485292, -
8.47e-57FFCP PHASE1:Hg19::chr2:179398102..179398109,-#_5276184f76069b5d8972d3c58f42119ep@chr2:179398102..179398109, -
8.47e-57FFCP PHASE1:Hg19::chr3:52485281..52485292,-#_5276184f76069b5d8972d3c58f42119ep@chr3:52485281..52485292, -
1.13e-56FFCP PHASE1:Hg19::chr2:179395788..179395798,-#_5fed069b97f35e75ce8547be89f0646cp@chr2:179395788..179395798, -
1.13e-56FFCP PHASE2:Hg19::chr17:22021942..22021966,+#_5fed069b97f35e75ce8547be89f0646cp@chr17:22021942..22021966, +
1.13e-56FFCP PHASE1:Hg19::chr17:22021942..22021966,+#_5fed069b97f35e75ce8547be89f0646cp@chr17:22021942..22021966, +
1.13e-56FFCP PHASE2:Hg19::chr2:179395788..179395798,-#_5fed069b97f35e75ce8547be89f0646cp@chr2:179395788..179395798, -
1.5e-56FFCP PHASE1:Hg19::chr22:36002971..36002977,-#_f9ac6b45e829608d1a57b09b06236f96p@chr22:36002971..36002977, -
1.5e-56FFCP PHASE2:Hg19::chr22:36002971..36002977,-#_f9ac6b45e829608d1a57b09b06236f96p@chr22:36002971..36002977, -
8.82e-51FFCP PHASE1:Hg19::chr18:64271475..64271484,-#_02ab0f8a711993fca1e0bab97fd197b9p6@CDH19
8.82e-51FFCP PHASE2:Hg19::chr18:64271475..64271484,-#_02ab0f8a711993fca1e0bab97fd197b9p6@CDH19
1.88e-50FFCP PHASE1:Hg19::chr1:237350761..237350764,+#_2b2c7477da834e83be47beb167ecc4dep@chr1:237350761..237350764, +
1.88e-50FFCP PHASE2:Hg19::chr1:237350761..237350764,+#_2b2c7477da834e83be47beb167ecc4dep@chr1:237350761..237350764, +
2.42e-50FFCP PHASE2:Hg19::chr14:23863442..23863452,-#_9ac5e75a44bd43a61d5e04f7d58f0307p@chr14:23863442..23863452, -
2.42e-50FFCP PHASE1:Hg19::chr5:123739302..123739319,-#_9ac5e75a44bd43a61d5e04f7d58f0307p@chr5:123739302..123739319, -
2.42e-50FFCP PHASE2:Hg19::chr7:35286774..35286778,-#_9ac5e75a44bd43a61d5e04f7d58f0307p@chr7:35286774..35286778, -
2.42e-50FFCP PHASE1:Hg19::chr7:35286774..35286778,-#_9ac5e75a44bd43a61d5e04f7d58f0307p@chr7:35286774..35286778, -
2.42e-50FFCP PHASE1:Hg19::chr14:23863442..23863452,-#_9ac5e75a44bd43a61d5e04f7d58f0307p@chr14:23863442..23863452, -
2.42e-50FFCP PHASE2:Hg19::chr5:123739302..123739319,-#_9ac5e75a44bd43a61d5e04f7d58f0307p@chr5:123739302..123739319, -
2.74e-50FFCP PHASE1:Hg19::chr7:97501400..97501407,-#_a992a1dbb2da074f8a556b403a0d0654p16@ASNS
2.74e-50FFCP PHASE2:Hg19::chr18:28807557..28807562,-#_a992a1dbb2da074f8a556b403a0d0654p@chr18:28807557..28807562, -
2.74e-50FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_a992a1dbb2da074f8a556b403a0d0654p@chr2:179656442..179656451, -
2.74e-50FFCP PHASE2:Hg19::chr7:97501400..97501407,-#_a992a1dbb2da074f8a556b403a0d0654p16@ASNS
2.74e-50FFCP PHASE1:Hg19::chr18:28807557..28807562,-#_a992a1dbb2da074f8a556b403a0d0654p@chr18:28807557..28807562, -
2.74e-50FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_a992a1dbb2da074f8a556b403a0d0654p@chr2:179656442..179656451, -
3.11e-50FFCP PHASE1:Hg19::chr6:129355052..129355056,+#_b496276aad248abc1c6faf4a583583f0p@chr6:129355052..129355056, +
3.11e-50FFCP PHASE2:Hg19::chr3:141609162..141609164,+#_b496276aad248abc1c6faf4a583583f0p@chr3:141609162..141609164, +
3.11e-50FFCP PHASE2:Hg19::chr6:129355052..129355056,+#_b496276aad248abc1c6faf4a583583f0p@chr6:129355052..129355056, +
3.11e-50FFCP PHASE1:Hg19::chr3:141609162..141609164,+#_b496276aad248abc1c6faf4a583583f0p@chr3:141609162..141609164, +
4.52e-50FFCP PHASE2:Hg19::chr1:11907408..11907415,+#_b68453f363ad9513800ebe70033e865ap@chr1:11907408..11907415, +
4.52e-50FFCP PHASE1:Hg19::chr1:11907440..11907450,+#_b68453f363ad9513800ebe70033e865ap@chr1:11907440..11907450, +
4.52e-50FFCP PHASE1:Hg19::chr7:44181138..44181145,-#_b68453f363ad9513800ebe70033e865ap4@MYL7
4.52e-50FFCP PHASE2:Hg19::chr1:109849679..109849688,-#_b68453f363ad9513800ebe70033e865ap3@MYBPHL
4.52e-50FFCP PHASE2:Hg19::chr5:157747715..157747717,+#_b68453f363ad9513800ebe70033e865ap@chr5:157747715..157747717, +
4.52e-50FFCP PHASE2:Hg19::chr1:11906044..11906050,-#_b68453f363ad9513800ebe70033e865ap@chr1:11906044..11906050, -
4.52e-50FFCP PHASE1:Hg19::chr1:11907318..11907327,-#_b68453f363ad9513800ebe70033e865ap7@NPPA
4.52e-50FFCP PHASE1:Hg19::chr8:24530708..24530710,+#_b68453f363ad9513800ebe70033e865ap@chr8:24530708..24530710, +
4.52e-50FFCP PHASE2:Hg19::chr1:11907415..11907418,-#_b68453f363ad9513800ebe70033e865ap15@NPPA
4.52e-50FFCP PHASE1:Hg19::chr2:220491973..220491982,+#_b68453f363ad9513800ebe70033e865ap22@SLC4A3
4.52e-50FFCP PHASE2:Hg19::chr6:104898467..104898469,-#_b68453f363ad9513800ebe70033e865ap@chr6:104898467..104898469, -
4.52e-50FFCP PHASE2:Hg19::chr12:3373147..3373149,-#_b68453f363ad9513800ebe70033e865ap@chr12:3373147..3373149, -
4.52e-50FFCP PHASE1:Hg19::chr12:3373147..3373149,-#_b68453f363ad9513800ebe70033e865ap@chr12:3373147..3373149, -
4.52e-50FFCP PHASE1:Hg19::chr18:39821929..39821932,+#_b68453f363ad9513800ebe70033e865ap@chr18:39821929..39821932, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice. Hu et al. 2001.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002133&oldid=3277385"