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{{UBERON
{{UBERON
|id=UBERON:0002216
|name=symphysis
|namespace=
|def="Cartilaginous joint in which the articulating bones or cartilages are connected by fibrocartilage. Examples: pubic symphysis, intervertebral symphysis, manubriosternal joint.[FMA]" [FMA:FMA, Wikipedia:Symphysis]
|xref=FMA:7498;;http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Gray298.png/200px-Gray298.png;;MA:0001504;;SCTID:1584001
|is_a=UBERON:0002209;;UBERON:0002213
|synonym="secondary cartilaginous joint" EXACT []
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_7498-MA_0001504
|alt_id=UBERON:FMA_7498-MA_0001504
|disjoint_from=
|comment=Editors note: consider adding fibrocartilage class
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Cartilaginous joint in which the articulating bones or cartilages are connected by fibrocartilage. Examples: pubic symphysis, intervertebral symphysis, manubriosternal joint.[FMA]" [FMA:FMA, Wikipedia:Symphysis]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002216
|is_a=UBERON:0002209 ;;UBERON:0002213
|is_obsolete=
|located_in=
|located_in=
|name=symphysis
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="secondary cartilaginous joint" EXACT [FMA:7498]
|union_of=
|xref=FMA:7498;;http://upload.wikimedia.org/wikipedia/commons/b/b1/Gray298.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/b/b1/Gray298.png/200px-Gray298.png;;MA:0001504;;SCTID:1584001
}}
}}

Latest revision as of 17:28, 12 September 2014

Name:symphysis
Namespace:FANTOM
Definition:"Cartilaginous joint in which the articulating bones or cartilages are connected by fibrocartilage. Examples: pubic symphysis, intervertebral symphysis, manubriosternal joint.[FMA]" [FMA:FMA, Wikipedia:Symphysis]
Xrefs:
links:

FMA:7498
[ Gray298.png Gray298.png]
[ 200px-Gray298.png 200px-Gray298.png]
MA:0001504

SCTID:1584001
Synonyms: "secondary cartilaginous joint" EXACT [FMA:7498]
Comments:Editors note: consider adding fibrocartilage class
Alt_id: UBERON:FMA_7498-MA_0001504
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002209(fibrous joint),UBERON:0002213(cartilaginous joint)



Children

is a:UBERON:0001468 (intervertebral joint)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002216 (symphysis), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.25e-162FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_9497bc51a5fc6fa19c084821d907085cp@chr3:174737010..174737023, +
1.25e-162FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_9497bc51a5fc6fa19c084821d907085cp@chr3:174737010..174737023, +
3.92e-140FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_6b315ea9160fd879dab3856669ace29ap4@PAX1
3.92e-140FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_6b315ea9160fd879dab3856669ace29ap4@PAX1
4.22e-99FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_43ba5a0086a9003415873d144b74dd34p@chr5:30104176..30104187, -
4.22e-99FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_43ba5a0086a9003415873d144b74dd34p@chr5:30104176..30104187, -
1.06e-78FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_cf33170bfc8d40a8b7846c9e056c4cb1p4@NKX3-2
1.06e-78FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_cf33170bfc8d40a8b7846c9e056c4cb1p4@NKX3-2
2.52e-71FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_4182e575d9ff186fa3455b7d6971889fp@chr9:114135497..114135526, -
2.52e-71FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_4182e575d9ff186fa3455b7d6971889fp@chr9:114135497..114135526, -
7.4e-71FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_cb2ae7ddc853c985f9d189b3378bac12p@chr2:241897125..241897142, -
7.4e-71FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_cb2ae7ddc853c985f9d189b3378bac12p@chr2:241897125..241897142, -
6.33e-70FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_6aa5dddf88c4f14e0ee2cb14bf057b3ep@chr3:80727046..80727051, -
6.33e-70FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_6aa5dddf88c4f14e0ee2cb14bf057b3ep@chr3:80727046..80727051, -
4.8e-67FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_2255c584a0170f7a3671f39ae9069b5fp15@SNED1
4.8e-67FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_2255c584a0170f7a3671f39ae9069b5fp15@SNED1
1.24e-66FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_98189b6bdaf35ac2c2bd56e9a566a5e4p20@CAPZB
1.24e-66FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_98189b6bdaf35ac2c2bd56e9a566a5e4p20@CAPZB
1.26e-62FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_12fa3960387665108099afa6606b081dp@chr1:19778678..19778689, -
1.26e-62FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_12fa3960387665108099afa6606b081dp@chr1:19778678..19778689, -
1.1e-59FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_e0caf1d5a15e6c2a5ef8a2ef84131ba6p@chr2:241897189..241897221, -
1.1e-59FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_e0caf1d5a15e6c2a5ef8a2ef84131ba6p@chr2:241897189..241897221, -
1.55e-57FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_8a2abbb0cf962cbc55472374c07ef392p1@uc010aki.1
1.55e-57FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_8a2abbb0cf962cbc55472374c07ef392p1@uc010aki.1
4.09e-56FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_d1df2f275cf06a5df237d2bff1a36475p6@SIX4
4.09e-56FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_d1df2f275cf06a5df237d2bff1a36475p6@SIX4
3.74e-53FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_2edc1430becee26d9073e963b3d72b55p3@uc010aki.1
3.74e-53FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_2edc1430becee26d9073e963b3d72b55p3@uc010aki.1
1.15e-51FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_38b4691fe54f81f35f1ed749e0c53000p3@PAX1
1.15e-51FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_38b4691fe54f81f35f1ed749e0c53000p3@PAX1
2.3e-51FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_2af4413276ba3843e9fc0ca2f75de311p@chr10:81923378..81923389, -
2.3e-51FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_2af4413276ba3843e9fc0ca2f75de311p@chr10:81923378..81923389, -
3.24e-51FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_de641a3678e61a142c1e9855847fc774p@chr2:12248310..12248334, -
3.24e-51FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_de641a3678e61a142c1e9855847fc774p@chr2:12248310..12248334, -
8.0e-51FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_46b33ea5dc95bb9130e2f67dbd60c744p19@HDAC9
8.0e-51FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_46b33ea5dc95bb9130e2f67dbd60c744p19@HDAC9
5.06e-49FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_33973505cd6a0b3986b500dc96aa732ep@chr7:158224707..158224729, -
5.06e-49FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_33973505cd6a0b3986b500dc96aa732ep@chr7:158224707..158224729, -
5.24e-48FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_266c61bccfe1b5b4e2b8565e1b92b1edp@chr1:65888177..65888194, +
5.24e-48FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_266c61bccfe1b5b4e2b8565e1b92b1edp@chr1:65888177..65888194, +
2.98e-45FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_ca1677e5877f4de7836d3a92eecd310dp3@NKX3-2
2.98e-45FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_ca1677e5877f4de7836d3a92eecd310dp3@NKX3-2
2.92e-44FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_0a8dbd13dbbcf771debb49244060d8d7p1@MGC27382
2.92e-44FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_0a8dbd13dbbcf771debb49244060d8d7p1@MGC27382
1.71e-43FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_d2175dbf9d6df19701add6493451dea0p18@HDAC9
1.71e-43FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_d2175dbf9d6df19701add6493451dea0p18@HDAC9
1.48e-40FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_99613de788038e92683a0f68cdc8bc05p@chr13:24914614..24914622, -
1.48e-40FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_99613de788038e92683a0f68cdc8bc05p@chr13:24914614..24914622, -
1.48e-40FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_99613de788038e92683a0f68cdc8bc05p@chr9:33028063..33028067, -
1.48e-40FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_99613de788038e92683a0f68cdc8bc05p@chr9:33028063..33028067, -
1.64e-40FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_3d7747ee8ad632d6032719a9078c3726p1@PAX1
1.64e-40FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_3d7747ee8ad632d6032719a9078c3726p1@PAX1
1.81e-40FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_8f7978f957e4a5db87f85a8ea7ab202dp5@PTGFR
1.81e-40FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_8f7978f957e4a5db87f85a8ea7ab202dp5@PTGFR
2.13e-40FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_6baaeae9a25abe7f34071cc87e20bdaep@chr2:241897363..241897398, +
2.13e-40FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_6baaeae9a25abe7f34071cc87e20bdaep@chr2:241897363..241897398, +
3.04e-39FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_aa0af121c7e1d3eee45732325b9d4b91p2@PAX1
3.04e-39FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_aa0af121c7e1d3eee45732325b9d4b91p2@PAX1
7.19e-39FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_e31e779f0d38d38b324b0213c6490469p16@HDAC9
7.19e-39FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_e31e779f0d38d38b324b0213c6490469p16@HDAC9
7.19e-39FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_e31e779f0d38d38b324b0213c6490469p@chr5:140887761..140887777, +
7.19e-39FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_e31e779f0d38d38b324b0213c6490469p@chr5:140887761..140887777, +
1.24e-38FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_84ffefda6cd9e3ca034a19012632be08p4@NUP54
1.24e-38FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_84ffefda6cd9e3ca034a19012632be08p4@NUP54
2.08e-38FFCP PHASE1:Hg19::chr2:241938405..241938416,+#_cd5116e5fc26162b239b4f30786f9acep@chr2:241938405..241938416, +
2.08e-38FFCP PHASE2:Hg19::chr2:241938405..241938416,+#_cd5116e5fc26162b239b4f30786f9acep@chr2:241938405..241938416, +
3.34e-38FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_7159243b64863346b91a51797366cf93p1@NKX3-2
3.34e-38FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_7159243b64863346b91a51797366cf93p1@NKX3-2
3.68e-38FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_4a2d170441bb53f72dc4377f27d8cedbp10@SYNJ2
3.68e-38FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_4a2d170441bb53f72dc4377f27d8cedbp10@SYNJ2
5.39e-38FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_ad7addbd5ae0c8aa80cb0bb12f901bc8p@chr9:16138889..16138902, -
5.39e-38FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_ad7addbd5ae0c8aa80cb0bb12f901bc8p@chr9:16138889..16138902, -
8.66e-38FFCP PHASE2:Hg19::chr8:78311303..78311320,+#_eca63a8813b43968f7e010c4c7871792p2@ENST00000518706
8.66e-38FFCP PHASE1:Hg19::chr8:78311303..78311320,+#_eca63a8813b43968f7e010c4c7871792p2@ENST00000518706
2.96e-37FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_3d63dd29dbbf363d1de3317969d7530ap1@ENST00000436845
2.96e-37FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_3d63dd29dbbf363d1de3317969d7530ap1@ENST00000436845
6.92e-37FFCP PHASE2:Hg19::chr9:123239747..123239765,-#_e4f147fbc40e7d9b485601a7c74d1032p12@CDK5RAP2
6.92e-37FFCP PHASE1:Hg19::chr9:123239747..123239765,-#_e4f147fbc40e7d9b485601a7c74d1032p12@CDK5RAP2
3.28e-36FFCP PHASE1:Hg19::chr1:78695298..78695311,+#_f38d8bfb4470aa9e2566adb069b6b832p1@ENST00000413519
3.28e-36FFCP PHASE2:Hg19::chr1:78695298..78695311,+#_f38d8bfb4470aa9e2566adb069b6b832p1@ENST00000413519
9.62e-35FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_c6d431f37f6337a7f017f8fde6f7fe60p4@PAX9
9.62e-35FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_c6d431f37f6337a7f017f8fde6f7fe60p4@PAX9
1.8e-34FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_6f5bfdeedc3c6e3806b3dc4f9a57aa1dp@chr7:100202784..100202796, -
1.8e-34FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_6f5bfdeedc3c6e3806b3dc4f9a57aa1dp@chr7:100202784..100202796, -
3.69e-34FFCP PHASE1:Hg19::chr12:54422268..54422278,+#_d60eaaab39b3f26aaab0b411c3c3d177p8@HOXC6
3.69e-34FFCP PHASE2:Hg19::chr12:54422268..54422278,+#_d60eaaab39b3f26aaab0b411c3c3d177p8@HOXC6
5.52e-34FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_810aa964f715330c1ceba16847ee93fep6@CCDC86
5.52e-34FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_810aa964f715330c1ceba16847ee93fep6@CCDC86
1.43e-33FFCP PHASE1:Hg19::chr20:21695435..21695452,+#_9931ad6c6c94ccaaa8acf31921ad28ecp@chr20:21695435..21695452, +
1.43e-33FFCP PHASE2:Hg19::chr20:21695435..21695452,+#_9931ad6c6c94ccaaa8acf31921ad28ecp@chr20:21695435..21695452, +
5.36e-33FFCP PHASE1:Hg19::chr16:70795228..70795237,+#_98205bef30d707c34766d4bcb943a1f8p@chr16:70795228..70795237, +
5.36e-33FFCP PHASE2:Hg19::chr16:70795228..70795237,+#_98205bef30d707c34766d4bcb943a1f8p@chr16:70795228..70795237, +
1.05e-32FFCP PHASE1:Hg19::chr3:158384350..158384362,-#_a836964b45a1f9592ffbdc88173fc5e3p@chr3:158384350..158384362, -
1.05e-32FFCP PHASE2:Hg19::chr3:158384350..158384362,-#_a836964b45a1f9592ffbdc88173fc5e3p@chr3:158384350..158384362, -
1.7e-32FFCP PHASE2:Hg19::chr2:158345440..158345449,-#_77e9a41c893c98b817639cb76b4489d5p9@CYTIP
1.7e-32FFCP PHASE1:Hg19::chr2:158345440..158345449,-#_77e9a41c893c98b817639cb76b4489d5p9@CYTIP
2.34e-32FFCP PHASE2:Hg19::chr18:12012068..12012098,+#_feaa3a57b42530feb1610a6baf77f313p@chr18:12012068..12012098, +
2.34e-32FFCP PHASE1:Hg19::chr18:12012068..12012098,+#_feaa3a57b42530feb1610a6baf77f313p@chr18:12012068..12012098, +
2.79e-31FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_208060921f9c55248c0022f5cc94813cp1@ENST00000555639
2.79e-31FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_208060921f9c55248c0022f5cc94813cp1@ENST00000555639

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