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{{UBERON
{{UBERON
|id=UBERON:0002336
|alt_id=UBERON:FMA_86464-MA_0000188-MIAA_0000286
|name=corpus callosum
|anatomical_img_id=FMA:86464
|namespace=
|def="The corpus callosum is a thick bundle of nerve fibers comprising a commissural plate connecting the two cerebral hemispheres. It consists of contralateral axon projections that provides communications between the right and left cerebral hemispheres[GO]." [Wikipedia:Corpus_callosum]
|xref=BM:Tel-CC;;BTO:0000615;;EFO:0001390;;EV:0100305;;FMA:86464;;GAID:683;;http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Gray733.png/200px-Gray733.png;;MA:0000188;;MAT:0000286;;MESH:A.08.186.211.730.885.362;;MIAA:0000286;;ncithesaurus:Corpus_Callosum;;NIF_GrossAnatomy:birnlex_1087;;OpenCyc:Mx4rvbNzdZwpEbGdrcN5Y29ycA;;SCTID:362354006
|is_a=UBERON:0002473;;UBERON:0005340
|synonym=
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_86464-MA_0000188-MIAA_0000286
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The corpus callosum is a thick bundle of nerve fibers comprising a commissural plate connecting the two cerebral hemispheres. It consists of contralateral axon projections that provides communications between the right and left cerebral hemispheres[GO]." [Wikipedia:Corpus_callosum]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002336
|is_a=UBERON:0002473 ;;UBERON:0005340
|is_obsolete=
|located_in=
|located_in=
|name=corpus callosum
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;RO:0002161 NCBITaxon:9255
|subset=uberon_slim
|synonym=
|union_of=
|xref=BM:Tel-CC;;BTO:0000615;;EFO:0001390;;EV:0100305;;FMA:86464;;GAID:683;;http://upload.wikimedia.org/wikipedia/commons/a/aa/Gray733.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/a/aa/Gray733.png/200px-Gray733.png;;MA:0000188;;MAT:0000286;;MESH:A.08.186.211.730.885.362;;MIAA:0000286;;ncithesaurus:Corpus_Callosum;;NIF_GrossAnatomy:birnlex_1087;;OpenCyc:Mx4rvbNzdZwpEbGdrcN5Y29ycA;;SCTID:362354006
}}
}}

Latest revision as of 17:29, 12 September 2014

Name:corpus callosum
Namespace:FANTOM
Definition:"The corpus callosum is a thick bundle of nerve fibers comprising a commissural plate connecting the two cerebral hemispheres. It consists of contralateral axon projections that provides communications between the right and left cerebral hemispheres[GO]." [Wikipedia:Corpus_callosum]
Xrefs:
links:

BM:Tel-CC
BTO:0000615
EFO:0001390
EV:0100305
FMA:86464
GAID:683
[ Gray733.png Gray733.png]
[ 200px-Gray733.png 200px-Gray733.png]
MA:0000188
MAT:0000286
MESH:A.08.186.211.730.885.362
MIAA:0000286
ncithesaurus:Corpus_Callosum
NIF_GrossAnatomy:birnlex_1087
OpenCyc:Mx4rvbNzdZwpEbGdrcN5Y29ycA

SCTID:362354006
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_86464-MA_0000188-MIAA_0000286
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002473(intercerebral commissure),UBERON:0005340(dorsal telencephalic commissure)



Children

derives from:FF:0010042 (human corpus callosum - adult sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002336 (corpus callosum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr14:36462819..36462832,+#_ed833f88e9a8d66008bf96ea9b129878p@chr14:36462819..36462832, +
5.42e-195FFCP PHASE2:Hg19::chr14:36462819..36462832,+#_ed833f88e9a8d66008bf96ea9b129878p@chr14:36462819..36462832, +
5.42e-195FFCP PHASE1:Hg19::chr17:73689469..73689476,-#_ed833f88e9a8d66008bf96ea9b129878p@chr17:73689469..73689476, -
5.42e-195FFCP PHASE1:Hg19::chr5:60927228..60927236,-#_ed833f88e9a8d66008bf96ea9b129878p3@BC032909, p3@BC032910
5.42e-195FFCP PHASE2:Hg19::chr15:93827399..93827403,+#_ed833f88e9a8d66008bf96ea9b129878p@chr15:93827399..93827403, +
5.42e-195FFCP PHASE1:Hg19::chr15:93827399..93827403,+#_ed833f88e9a8d66008bf96ea9b129878p@chr15:93827399..93827403, +
5.42e-195FFCP PHASE2:Hg19::chr5:60927228..60927236,-#_ed833f88e9a8d66008bf96ea9b129878p3@BC032909, p3@BC032910
5.42e-195FFCP PHASE2:Hg19::chr17:73689469..73689476,-#_ed833f88e9a8d66008bf96ea9b129878p@chr17:73689469..73689476, -
9.37e-99FFCP PHASE1:Hg19::chr14:33926303..33926307,-#_bb8da58e7f7698d9d6bfb290141b97acp@chr14:33926303..33926307, -
9.37e-99FFCP PHASE2:Hg19::chr14:33926303..33926307,-#_bb8da58e7f7698d9d6bfb290141b97acp@chr14:33926303..33926307, -
9.37e-99FFCP PHASE1:Hg19::chr12:78359873..78359882,+#_bb8da58e7f7698d9d6bfb290141b97acp41@NAV3
9.37e-99FFCP PHASE2:Hg19::chr12:78359873..78359882,+#_bb8da58e7f7698d9d6bfb290141b97acp41@NAV3
9.37e-99FFCP PHASE2:Hg19::chr11:110248322..110248329,-#_bb8da58e7f7698d9d6bfb290141b97acp@chr11:110248322..110248329, -
9.37e-99FFCP PHASE2:Hg19::chr2:232548018..232548022,-#_bb8da58e7f7698d9d6bfb290141b97acp@chr2:232548018..232548022, -
9.37e-99FFCP PHASE1:Hg19::chr2:232548018..232548022,-#_bb8da58e7f7698d9d6bfb290141b97acp@chr2:232548018..232548022, -
9.37e-99FFCP PHASE1:Hg19::chr11:110248322..110248329,-#_bb8da58e7f7698d9d6bfb290141b97acp@chr11:110248322..110248329, -
2.55e-98FFCP PHASE1:Hg19::chr19:35788742..35788752,+#_5a6993aaaad0bc0de363e3792aff3f07p@chr19:35788742..35788752, +
2.55e-98FFCP PHASE2:Hg19::chr3:15374659..15374696,-#_5a6993aaaad0bc0de363e3792aff3f07p10@SH3BP5
2.55e-98FFCP PHASE1:Hg19::chr3:15374659..15374696,-#_5a6993aaaad0bc0de363e3792aff3f07p10@SH3BP5
2.55e-98FFCP PHASE2:Hg19::chr19:35788742..35788752,+#_5a6993aaaad0bc0de363e3792aff3f07p@chr19:35788742..35788752, +
1.23e-66FFCP PHASE2:Hg19::chr7:124391226..124391235,-#_3354886a7566fe1fac078e463b1bd3c7p@chr7:124391226..124391235, -
1.23e-66FFCP PHASE1:Hg19::chr8:42037488..42037504,+#_3354886a7566fe1fac078e463b1bd3c7p@chr8:42037488..42037504, +
1.23e-66FFCP PHASE1:Hg19::chr10:73479518..73479527,-#_3354886a7566fe1fac078e463b1bd3c7p5@C10orf105
1.23e-66FFCP PHASE2:Hg19::chr8:42037488..42037504,+#_3354886a7566fe1fac078e463b1bd3c7p@chr8:42037488..42037504, +
1.23e-66FFCP PHASE2:Hg19::chr17:72823919..72823924,-#_3354886a7566fe1fac078e463b1bd3c7p@chr17:72823919..72823924, -
1.23e-66FFCP PHASE1:Hg19::chr7:124391226..124391235,-#_3354886a7566fe1fac078e463b1bd3c7p@chr7:124391226..124391235, -
1.23e-66FFCP PHASE2:Hg19::chr10:73479518..73479527,-#_3354886a7566fe1fac078e463b1bd3c7p5@C10orf105
1.23e-66FFCP PHASE1:Hg19::chr12:78359680..78359686,+#_3354886a7566fe1fac078e463b1bd3c7p32@NAV3
1.23e-66FFCP PHASE2:Hg19::chr12:78359680..78359686,+#_3354886a7566fe1fac078e463b1bd3c7p32@NAV3
1.23e-66FFCP PHASE1:Hg19::chr17:72823919..72823924,-#_3354886a7566fe1fac078e463b1bd3c7p@chr17:72823919..72823924, -
2.39e-66FFCP PHASE2:Hg19::chr6:163681762..163681767,+#_a2352c18e2ad7069f58cc70d92ccd3b7p@chr6:163681762..163681767, +
2.39e-66FFCP PHASE1:Hg19::chr10:61043452..61043467,-#_a2352c18e2ad7069f58cc70d92ccd3b7p16@FAM13C
2.39e-66FFCP PHASE1:Hg19::chr10:25012236..25012245,-#_a2352c18e2ad7069f58cc70d92ccd3b7p24@ARHGAP21
2.39e-66FFCP PHASE2:Hg19::chr10:61043452..61043467,-#_a2352c18e2ad7069f58cc70d92ccd3b7p16@FAM13C
2.39e-66FFCP PHASE2:Hg19::chr10:25012236..25012245,-#_a2352c18e2ad7069f58cc70d92ccd3b7p24@ARHGAP21
2.39e-66FFCP PHASE1:Hg19::chr6:163681762..163681767,+#_a2352c18e2ad7069f58cc70d92ccd3b7p@chr6:163681762..163681767, +
4.66e-66FFCP PHASE1:Hg19::chr5:35089832..35089839,-#_4ee627d5077a3cbfdb30934599a186f7p26@PRLR
4.66e-66FFCP PHASE1:Hg19::chr17:40120071..40120085,+#_4ee627d5077a3cbfdb30934599a186f7p15@CNP
4.66e-66FFCP PHASE1:Hg19::chr7:129015806..129015815,+#_4ee627d5077a3cbfdb30934599a186f7p@chr7:129015806..129015815, +
4.66e-66FFCP PHASE2:Hg19::chr8:101522298..101522305,-#_4ee627d5077a3cbfdb30934599a186f7p@chr8:101522298..101522305, -
4.66e-66FFCP PHASE1:Hg19::chr7:129012882..129012891,-#_4ee627d5077a3cbfdb30934599a186f7p@chr7:129012882..129012891, -
4.66e-66FFCP PHASE2:Hg19::chr4:174293011..174293022,-#_4ee627d5077a3cbfdb30934599a186f7p@chr4:174293011..174293022, -
4.66e-66FFCP PHASE2:Hg19::chr5:35089799..35089804,-#_4ee627d5077a3cbfdb30934599a186f7p20@PRLR
4.66e-66FFCP PHASE2:Hg19::chr4:645709..645712,+#_4ee627d5077a3cbfdb30934599a186f7p15@PDE6B
4.66e-66FFCP PHASE1:Hg19::chr13:99135698..99135706,+#_4ee627d5077a3cbfdb30934599a186f7p@chr13:99135698..99135706, +
4.66e-66FFCP PHASE2:Hg19::chr13:99135698..99135706,+#_4ee627d5077a3cbfdb30934599a186f7p@chr13:99135698..99135706, +
4.66e-66FFCP PHASE1:Hg19::chr14:91199850..91199861,-#_4ee627d5077a3cbfdb30934599a186f7p@chr14:91199850..91199861, -
4.66e-66FFCP PHASE2:Hg19::chr14:91199850..91199861,-#_4ee627d5077a3cbfdb30934599a186f7p@chr14:91199850..91199861, -
4.66e-66FFCP PHASE1:Hg19::chr4:174293011..174293022,-#_4ee627d5077a3cbfdb30934599a186f7p@chr4:174293011..174293022, -
4.66e-66FFCP PHASE2:Hg19::chr5:35089832..35089839,-#_4ee627d5077a3cbfdb30934599a186f7p26@PRLR
4.66e-66FFCP PHASE2:Hg19::chr7:129015806..129015815,+#_4ee627d5077a3cbfdb30934599a186f7p@chr7:129015806..129015815, +
4.66e-66FFCP PHASE1:Hg19::chr4:645709..645712,+#_4ee627d5077a3cbfdb30934599a186f7p15@PDE6B
4.66e-66FFCP PHASE2:Hg19::chr7:129012882..129012891,-#_4ee627d5077a3cbfdb30934599a186f7p@chr7:129012882..129012891, -
4.66e-66FFCP PHASE1:Hg19::chr8:101522298..101522305,-#_4ee627d5077a3cbfdb30934599a186f7p@chr8:101522298..101522305, -
4.66e-66FFCP PHASE1:Hg19::chr5:35089799..35089804,-#_4ee627d5077a3cbfdb30934599a186f7p20@PRLR
4.66e-66FFCP PHASE2:Hg19::chr17:40120071..40120085,+#_4ee627d5077a3cbfdb30934599a186f7p15@CNP
1.46e-50FFCP PHASE1:Hg19::chr6:170571770..170571782,-#_6d25fe9baaebff668cd3511e84028ae1p2@LOC154449
1.46e-50FFCP PHASE2:Hg19::chr6:170571770..170571782,-#_6d25fe9baaebff668cd3511e84028ae1p2@LOC154449
2.42e-50FFCP PHASE2:Hg19::chr7:30202318..30202329,+#_8ac6790f0dc75420471121db97a8bc2fp@chr7:30202318..30202329, +
2.42e-50FFCP PHASE1:Hg19::chr12:106697974..106697990,-#_8ac6790f0dc75420471121db97a8bc2fp31@CKAP4
2.42e-50FFCP PHASE2:Hg19::chr12:106697974..106697990,-#_8ac6790f0dc75420471121db97a8bc2fp31@CKAP4
2.42e-50FFCP PHASE2:Hg19::chr19:15751984..15751994,+#_8ac6790f0dc75420471121db97a8bc2fp6@CYP4F3
2.42e-50FFCP PHASE1:Hg19::chrX:103031196..103031205,-#_8ac6790f0dc75420471121db97a8bc2fp@chrX:103031196..103031205, -
2.42e-50FFCP PHASE1:Hg19::chr19:15751984..15751994,+#_8ac6790f0dc75420471121db97a8bc2fp6@CYP4F3
2.42e-50FFCP PHASE2:Hg19::chr4:74005833..74005844,-#_8ac6790f0dc75420471121db97a8bc2fp@chr4:74005833..74005844, -
2.42e-50FFCP PHASE2:Hg19::chr11:133996343..133996351,+#_8ac6790f0dc75420471121db97a8bc2fp8@JAM3
2.42e-50FFCP PHASE1:Hg19::chr10:7454514..7454525,-#_8ac6790f0dc75420471121db97a8bc2fp@chr10:7454514..7454525, -
2.42e-50FFCP PHASE1:Hg19::chr11:133996343..133996351,+#_8ac6790f0dc75420471121db97a8bc2fp8@JAM3
2.42e-50FFCP PHASE1:Hg19::chr7:30202318..30202329,+#_8ac6790f0dc75420471121db97a8bc2fp@chr7:30202318..30202329, +
2.42e-50FFCP PHASE1:Hg19::chr4:74005833..74005844,-#_8ac6790f0dc75420471121db97a8bc2fp@chr4:74005833..74005844, -
2.42e-50FFCP PHASE2:Hg19::chrX:103031196..103031205,-#_8ac6790f0dc75420471121db97a8bc2fp@chrX:103031196..103031205, -
2.42e-50FFCP PHASE2:Hg19::chr10:7454514..7454525,-#_8ac6790f0dc75420471121db97a8bc2fp@chr10:7454514..7454525, -
3.99e-50FFCP PHASE1:Hg19::chr17:36726052..36726061,-#_562f407e37bd91071ca993577eaf8651p@chr17:36726052..36726061, -
3.99e-50FFCP PHASE2:Hg19::chr9:20927844..20927855,+#_562f407e37bd91071ca993577eaf8651p@chr9:20927844..20927855, +
3.99e-50FFCP PHASE2:Hg19::chr11:45922629..45922637,+#_562f407e37bd91071ca993577eaf8651p@chr11:45922629..45922637, +
3.99e-50FFCP PHASE1:Hg19::chr11:45922629..45922637,+#_562f407e37bd91071ca993577eaf8651p@chr11:45922629..45922637, +
3.99e-50FFCP PHASE2:Hg19::chr3:160203278..160203289,-#_562f407e37bd91071ca993577eaf8651p8@TRIM59
3.99e-50FFCP PHASE1:Hg19::chr3:160203278..160203289,-#_562f407e37bd91071ca993577eaf8651p8@TRIM59
3.99e-50FFCP PHASE1:Hg19::chr6:164364681..164364684,-#_562f407e37bd91071ca993577eaf8651p@chr6:164364681..164364684, -
3.99e-50FFCP PHASE1:Hg19::chr9:20927844..20927855,+#_562f407e37bd91071ca993577eaf8651p@chr9:20927844..20927855, +
3.99e-50FFCP PHASE2:Hg19::chr6:164364681..164364684,-#_562f407e37bd91071ca993577eaf8651p@chr6:164364681..164364684, -
3.99e-50FFCP PHASE2:Hg19::chr17:36726052..36726061,-#_562f407e37bd91071ca993577eaf8651p@chr17:36726052..36726061, -
6.58e-50FFCP PHASE1:Hg19::chr11:117585539..117585541,-#_e0e5fee29c1e978228c28a9778dae381p@chr11:117585539..117585541, -
6.58e-50FFCP PHASE1:Hg19::chr3:190578500..190578506,-#_e0e5fee29c1e978228c28a9778dae381p@chr3:190578500..190578506, -
6.58e-50FFCP PHASE1:Hg19::chr3:10706167..10706179,-#_e0e5fee29c1e978228c28a9778dae381p@chr3:10706167..10706179, -
6.58e-50FFCP PHASE2:Hg19::chr6:133119649..133119655,-#_e0e5fee29c1e978228c28a9778dae381p6@C6orf192
6.58e-50FFCP PHASE1:Hg19::chrX:28605300..28605301,+#_e0e5fee29c1e978228c28a9778dae381p8@IL1RAPL1
6.58e-50FFCP PHASE2:Hg19::chr2:219610931..219610941,+#_e0e5fee29c1e978228c28a9778dae381p13@TTLL4
6.58e-50FFCP PHASE2:Hg19::chr11:117585539..117585541,-#_e0e5fee29c1e978228c28a9778dae381p@chr11:117585539..117585541, -
6.58e-50FFCP PHASE1:Hg19::chr9:112191163..112191174,-#_e0e5fee29c1e978228c28a9778dae381p10@PTPN3
6.58e-50FFCP PHASE1:Hg19::chr11:67190503..67190512,+#_e0e5fee29c1e978228c28a9778dae381p8@CARNS1
6.58e-50FFCP PHASE1:Hg19::chr2:219610931..219610941,+#_e0e5fee29c1e978228c28a9778dae381p13@TTLL4
6.58e-50FFCP PHASE2:Hg19::chrX:28605300..28605301,+#_e0e5fee29c1e978228c28a9778dae381p8@IL1RAPL1
6.58e-50FFCP PHASE1:Hg19::chr12:99288459..99288464,-#_e0e5fee29c1e978228c28a9778dae381p38@ANKS1B
6.58e-50FFCP PHASE2:Hg19::chr12:99288459..99288464,-#_e0e5fee29c1e978228c28a9778dae381p38@ANKS1B
6.58e-50FFCP PHASE2:Hg19::chr4:7412700..7412704,+#_e0e5fee29c1e978228c28a9778dae381p@chr4:7412700..7412704, +
6.58e-50FFCP PHASE1:Hg19::chr6:133119649..133119655,-#_e0e5fee29c1e978228c28a9778dae381p6@C6orf192
6.58e-50FFCP PHASE2:Hg19::chr3:190578500..190578506,-#_e0e5fee29c1e978228c28a9778dae381p@chr3:190578500..190578506, -
6.58e-50FFCP PHASE2:Hg19::chr11:67190503..67190512,+#_e0e5fee29c1e978228c28a9778dae381p8@CARNS1
6.58e-50FFCP PHASE2:Hg19::chr9:112191163..112191174,-#_e0e5fee29c1e978228c28a9778dae381p10@PTPN3

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