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{{UBERON
{{UBERON
|id=UBERON:0003074
|alt_id=UBERON:XAO_0000242-ZFA_0000546
|name=mesonephric duct
|namespace=
|def="Paired organ that connects the primitive kidney Wolffian body (or mesonephros) to the cloaca and serves as the anlage for certain male reproductive organs. the Wolffian duct is what remains of the pronephric duct after the atrophy of the pronephros[WP]. In Zebrafish: Duct of the adult kidney (mesonephros), present bilaterally ventral to the somites and leading to the cloacal chamber[ZFA]." [Wikipedia:Mesonephric_duct, ZFIN:curator]
|xref=AAO:0000637;;EHDAA:1590;;EHDAA2:0001243;;EMAPA:16577;;GAID:1315;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray1109.png/200px-Gray1109.png;;MESH:A.16.254.940;;ncithesaurus:Mesonephric_Duct;;SCTID:308800003;;TAO:0000546;;VHOG:0000082;;XAO:0000242;;ZFA:0000546
|is_a=UBERON:0000083;;UBERON:0009201
|synonym="archinephric duct" RELATED [VHOG:0000082, Wikipedia:Wolffian_duct];;"Leydig's duct" RELATED [Wikipedia:Wolffian_duct];;"renal duct" RELATED [];;"Wolffian duct" EXACT [GOC:yaf, Wikipedia:Wolffian_duct, ZFA:0000546]
|comment=TODO - mesonephric portion of the nephric duct. Development notes: In the male the Wolffian duct persists, and forms for example the epididymis, the ductus deferens, the ejaculatory duct, seminal vesicle and efferent ducts.
|comment=TODO - mesonephric portion of the nephric duct. Development notes: In the male the Wolffian duct persists, and forms for example the epididymis, the ductus deferens, the ejaculatory duct, seminal vesicle and efferent ducts.
|alt_id=UBERON:XAO_0000242-ZFA_0000546
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Paired organ that connects the primitive kidney Wolffian body (or mesonephros) to the cloaca and serves as the anlage for certain male reproductive organs. the Wolffian duct is what remains of the pronephric duct after the atrophy of the pronephros[WP]. In Zebrafish: Duct of the adult kidney (mesonephros), present bilaterally ventral to the somites and leading to the cloacal chamber[ZFA]." [Wikipedia:Mesonephric_duct, ZFIN:curator]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0003060
|develops_from=UBERON:0003060
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003074
|is_a=UBERON:0000083 ;;UBERON:0009201
|is_obsolete=
|located_in=
|located_in=
|name=mesonephric duct
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000080
|part_of=UBERON:0000080
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure consisting of either of a pair of longitudinal ducts which carry urine and in males, sperm, to the cloaca.[AAO]" xsd:string
|subset=uberon_slim;;vertebrate_core
|synonym="archinephric duct" RELATED [VHOG:0000082, Wikipedia:Wolffian_duct];;"ductus mesonephricus; ductus Wolffi" RELATED LATIN [Wikipedia:Mesonephric_duct];;"Leydig's duct" RELATED [Wikipedia:Wolffian_duct];;"renal duct" RELATED [];;"Wolffian duct" EXACT [GOC:yaf, Wikipedia:Wolffian_duct, ZFA:0000546]
|union_of=
|xref=AAO:0000637;;EHDAA2:0001243;;EHDAA:1590;;EMAPA:16577;;GAID:1315;;http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray1109.png/200px-Gray1109.png;;MESH:A.16.254.940;;ncithesaurus:Mesonephric_Duct;;SCTID:308800003;;TAO:0000546;;VHOG:0000082;;XAO:0000242;;ZFA:0000546
}}
}}

Latest revision as of 17:36, 12 September 2014

Name:mesonephric duct
Namespace:FANTOM
Definition:"Paired organ that connects the primitive kidney Wolffian body (or mesonephros) to the cloaca and serves as the anlage for certain male reproductive organs. the Wolffian duct is what remains of the pronephric duct after the atrophy of the pronephros[WP]. In Zebrafish: Duct of the adult kidney (mesonephros), present bilaterally ventral to the somites and leading to the cloacal chamber[ZFA]." [Wikipedia:Mesonephric_duct, ZFIN:curator]
Xrefs:
links:

AAO:0000637
EHDAA2:0001243
EHDAA:1590
EMAPA:16577
GAID:1315
[ Gray1109.png Gray1109.png]
[ 200px-Gray1109.png 200px-Gray1109.png]
MESH:A.16.254.940
ncithesaurus:Mesonephric_Duct
SCTID:308800003
TAO:0000546
VHOG:0000082
XAO:0000242

ZFA:0000546
Synonyms: "archinephric duct" RELATED [VHOG:0000082, Wikipedia:Wolffian_duct]
"ductus mesonephricus; ductus Wolffi" RELATED LATIN [Wikipedia:Mesonephric_duct]
"Leydig's duct" RELATED [Wikipedia:Wolffian_duct]
"renal duct" RELATED []
"Wolffian duct" EXACT [GOC:yaf, Wikipedia:Wolffian_duct, ZFA:0000546]
Comments:TODO - mesonephric portion of the nephric duct. Development notes: In the male the Wolffian duct persists, and forms for example the epididymis, the ductus deferens, the ejaculatory duct, seminal vesicle and efferent ducts.
Alt_id: UBERON:XAO_0000242-ZFA_0000546
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000083(mesonephric tubule),UBERON:0009201(nephric duct)
develops_from:UBERON:0003060(pronephric duct)
part_of:UBERON:0000080(mesonephros)



Children

develops from:UBERON:0000084 (ureteric bud),UBERON:0001301 (epididymis),UBERON:0003220 (metanephric mesenchyme)
part of:UBERON:0000084 (ureteric bud)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003074 (mesonephric duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_f7d33b73438f2f0c183b5f06497756a0p4@Spink12
1.58e-86FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_f7d33b73438f2f0c183b5f06497756a0p4@Spink12
3.28e-58FFCP PHASE2:Mm9::chr4:150092027..150092070,-#_de761753f2d00812ad5ddc3eae08716bp@chr4:150092027..150092070, -
3.28e-58FFCP PHASE2:Mm9::chr2:152302836..152302841,+#_de761753f2d00812ad5ddc3eae08716bp6@Defb20
3.28e-58FFCP PHASE2:Mm9::chrX:164787162..164787188,-#_de761753f2d00812ad5ddc3eae08716bp@chrX:164787162..164787188, -
3.28e-58FFCP PHASE1:Mm9::chr3:103650758..103650778,+#_de761753f2d00812ad5ddc3eae08716bp@chr3:103650758..103650778, +
3.28e-58FFCP PHASE1:Mm9::chr19:17591760..17591765,+#_de761753f2d00812ad5ddc3eae08716bp@chr19:17591760..17591765, +
3.28e-58FFCP PHASE1:Mm9::chr14:52542831..52542836,-#_de761753f2d00812ad5ddc3eae08716bp4@Rnase13
3.28e-58FFCP PHASE2:Mm9::chr9:26610184..26610191,-#_de761753f2d00812ad5ddc3eae08716bp4@Glb1l2
3.28e-58FFCP PHASE1:Mm9::chr13:21379306..21379315,-#_de761753f2d00812ad5ddc3eae08716bp@chr13:21379306..21379315, -
3.28e-58FFCP PHASE2:Mm9::chr7:148445639..148445665,+#_de761753f2d00812ad5ddc3eae08716bp@chr7:148445639..148445665, +
3.28e-58FFCP PHASE2:Mm9::chr14:51680551..51680555,-#_de761753f2d00812ad5ddc3eae08716bp@chr14:51680551..51680555, -
3.28e-58FFCP PHASE1:Mm9::chr7:148445639..148445665,+#_de761753f2d00812ad5ddc3eae08716bp@chr7:148445639..148445665, +
3.28e-58FFCP PHASE2:Mm9::chrX:12571771..12571780,-#_de761753f2d00812ad5ddc3eae08716bp@chrX:12571771..12571780, -
3.28e-58FFCP PHASE2:Mm9::chr15:54678915..54678922,-#_de761753f2d00812ad5ddc3eae08716bp@chr15:54678915..54678922, -
3.28e-58FFCP PHASE2:Mm9::chr5:31379454..31379466,+#_de761753f2d00812ad5ddc3eae08716bp@chr5:31379454..31379466, +
3.28e-58FFCP PHASE1:Mm9::chrX:12571771..12571780,-#_de761753f2d00812ad5ddc3eae08716bp@chrX:12571771..12571780, -
3.28e-58FFCP PHASE1:Mm9::chr16:25752228..25752237,+#_de761753f2d00812ad5ddc3eae08716bp@chr16:25752228..25752237, +
3.28e-58FFCP PHASE1:Mm9::chr11:116901496..116901514,-#_de761753f2d00812ad5ddc3eae08716bp1@ENSMUST00000150628, p1@ENSMUST00000152401, p1@uc007mmw.1
3.28e-58FFCP PHASE2:Mm9::chr2:164480465..164480471,-#_de761753f2d00812ad5ddc3eae08716bp2@Wfdc9
3.28e-58FFCP PHASE2:Mm9::chr11:96140694..96140720,+#_de761753f2d00812ad5ddc3eae08716bp@chr11:96140694..96140720, +
3.28e-58FFCP PHASE1:Mm9::chr8:25706249..25706254,+#_de761753f2d00812ad5ddc3eae08716bp@chr8:25706249..25706254, +
3.28e-58FFCP PHASE1:Mm9::chr7:6204391..6204398,+#_de761753f2d00812ad5ddc3eae08716bp2@Gm6792
3.28e-58FFCP PHASE2:Mm9::chr1:89597818..89597827,+#_de761753f2d00812ad5ddc3eae08716bp@chr1:89597818..89597827, +
3.28e-58FFCP PHASE2:Mm9::chr5:110773731..110773753,+#_de761753f2d00812ad5ddc3eae08716bp@chr5:110773731..110773753, +
3.28e-58FFCP PHASE2:Mm9::chr11:116901540..116901549,-#_de761753f2d00812ad5ddc3eae08716bp4@uc007mmw.1
3.28e-58FFCP PHASE2:Mm9::chr9:70761885..70761895,+#_de761753f2d00812ad5ddc3eae08716bp@chr9:70761885..70761895, +
3.28e-58FFCP PHASE1:Mm9::chr18:74784728..74784738,+#_de761753f2d00812ad5ddc3eae08716bp@chr18:74784728..74784738, +
3.28e-58FFCP PHASE1:Mm9::chr14:51680551..51680555,-#_de761753f2d00812ad5ddc3eae08716bp@chr14:51680551..51680555, -
3.28e-58FFCP PHASE1:Mm9::chr13:21379118..21379120,-#_de761753f2d00812ad5ddc3eae08716bp@chr13:21379118..21379120, -
3.28e-58FFCP PHASE2:Mm9::chr14:51676936..51676963,-#_de761753f2d00812ad5ddc3eae08716bp6@Rnase12
3.28e-58FFCP PHASE1:Mm9::chrX:75798097..75798101,-#_de761753f2d00812ad5ddc3eae08716bp@chrX:75798097..75798101, -
3.28e-58FFCP PHASE2:Mm9::chr13:21380610..21380620,-#_de761753f2d00812ad5ddc3eae08716bp@chr13:21380610..21380620, -
3.28e-58FFCP PHASE1:Mm9::chr17:35252614..35252635,-#_de761753f2d00812ad5ddc3eae08716bp3@Ly6g5b
3.28e-58FFCP PHASE2:Mm9::chr9:35657557..35657582,-#_de761753f2d00812ad5ddc3eae08716bp2@Gm3428
3.28e-58FFCP PHASE1:Mm9::chr11:101959282..101959299,-#_de761753f2d00812ad5ddc3eae08716bp@chr11:101959282..101959299, -
3.28e-58FFCP PHASE2:Mm9::chr12:103896102..103896116,-#_de761753f2d00812ad5ddc3eae08716bp@chr12:103896102..103896116, -
3.28e-58FFCP PHASE2:Mm9::chr16:23308115..23308126,+#_de761753f2d00812ad5ddc3eae08716bp@chr16:23308115..23308126, +
3.28e-58FFCP PHASE2:Mm9::chrX:156776465..156776473,-#_de761753f2d00812ad5ddc3eae08716bp@chrX:156776465..156776473, -
3.28e-58FFCP PHASE1:Mm9::chr1:90155722..90155743,+#_de761753f2d00812ad5ddc3eae08716bp@chr1:90155722..90155743, +
3.28e-58FFCP PHASE1:Mm9::chr16:22547027..22547063,+#_de761753f2d00812ad5ddc3eae08716bp@chr16:22547027..22547063, +
3.28e-58FFCP PHASE2:Mm9::chr15:75304916..75304925,+#_de761753f2d00812ad5ddc3eae08716bp@chr15:75304916..75304925, +
3.28e-58FFCP PHASE2:Mm9::chr2:158083973..158083982,+#_de761753f2d00812ad5ddc3eae08716bp3@Bpi
3.28e-58FFCP PHASE1:Mm9::chr4:106730107..106730125,-#_de761753f2d00812ad5ddc3eae08716bp@chr4:106730107..106730125, -
3.28e-58FFCP PHASE1:Mm9::chr2:25677632..25677636,-#_de761753f2d00812ad5ddc3eae08716bp@chr2:25677632..25677636, -
3.28e-58FFCP PHASE1:Mm9::chr14:103837894..103837900,+#_de761753f2d00812ad5ddc3eae08716bp@chr14:103837894..103837900, +
3.28e-58FFCP PHASE1:Mm9::chr12:16664708..16664723,+#_de761753f2d00812ad5ddc3eae08716bp@chr12:16664708..16664723, +
3.28e-58FFCP PHASE1:Mm9::chr9:35651764..35651782,-#_de761753f2d00812ad5ddc3eae08716bp2@9230110F15Rik
3.28e-58FFCP PHASE2:Mm9::chrX:75798114..75798125,-#_de761753f2d00812ad5ddc3eae08716bp@chrX:75798114..75798125, -
3.28e-58FFCP PHASE1:Mm9::chr2:164434346..164434353,-#_de761753f2d00812ad5ddc3eae08716bp@chr2:164434346..164434353, -
3.28e-58FFCP PHASE2:Mm9::chr11:101958855..101958871,-#_de761753f2d00812ad5ddc3eae08716bp@chr11:101958855..101958871, -
3.28e-58FFCP PHASE1:Mm9::chr11:59845376..59845393,-#_de761753f2d00812ad5ddc3eae08716bp@chr11:59845376..59845393, -
3.28e-58FFCP PHASE1:Mm9::chr7:109379339..109379349,+#_de761753f2d00812ad5ddc3eae08716bp15@Pgap2
3.28e-58FFCP PHASE1:Mm9::chr5:35930667..35930691,+#_de761753f2d00812ad5ddc3eae08716bp@chr5:35930667..35930691, +
3.28e-58FFCP PHASE2:Mm9::chr5:124447371..124447383,+#_de761753f2d00812ad5ddc3eae08716bp@chr5:124447371..124447383, +
3.28e-58FFCP PHASE2:Mm9::chrX:20219008..20219045,+#_de761753f2d00812ad5ddc3eae08716bp@chrX:20219008..20219045, +
3.28e-58FFCP PHASE1:Mm9::chr1:87936238..87936249,+#_de761753f2d00812ad5ddc3eae08716bp@chr1:87936238..87936249, +
3.28e-58FFCP PHASE2:Mm9::chr8:91107095..91107103,+#_de761753f2d00812ad5ddc3eae08716bp@chr8:91107095..91107103, +
3.28e-58FFCP PHASE2:Mm9::chr19:24582739..24582748,-#_de761753f2d00812ad5ddc3eae08716bp@chr19:24582739..24582748, -
3.28e-58FFCP PHASE2:Mm9::chr8:19142604..19142612,+#_de761753f2d00812ad5ddc3eae08716bp@chr8:19142604..19142612, +
3.28e-58FFCP PHASE1:Mm9::chr11:53937918..53937922,+#_de761753f2d00812ad5ddc3eae08716bp7@P4ha2
3.28e-58FFCP PHASE1:Mm9::chr18:62816857..62816866,+#_de761753f2d00812ad5ddc3eae08716bp7@Spink10
3.28e-58FFCP PHASE1:Mm9::chrX:20219008..20219045,+#_de761753f2d00812ad5ddc3eae08716bp@chrX:20219008..20219045, +
3.28e-58FFCP PHASE1:Mm9::chr5:31379454..31379466,+#_de761753f2d00812ad5ddc3eae08716bp@chr5:31379454..31379466, +
3.28e-58FFCP PHASE2:Mm9::chr8:25706074..25706082,-#_de761753f2d00812ad5ddc3eae08716bp3@Ido1
3.28e-58FFCP PHASE2:Mm9::chr13:21378968..21378988,-#_de761753f2d00812ad5ddc3eae08716bp@chr13:21378968..21378988, -
3.28e-58FFCP PHASE1:Mm9::chr15:75304916..75304925,+#_de761753f2d00812ad5ddc3eae08716bp@chr15:75304916..75304925, +
3.28e-58FFCP PHASE2:Mm9::chr1:87922962..87922982,+#_de761753f2d00812ad5ddc3eae08716bp@chr1:87922962..87922982, +
3.28e-58FFCP PHASE2:Mm9::chr4:134913640..134913649,+#_de761753f2d00812ad5ddc3eae08716bp@chr4:134913640..134913649, +
3.28e-58FFCP PHASE1:Mm9::chr2:25348986..25348999,-#_de761753f2d00812ad5ddc3eae08716bp4@Lcn12
3.28e-58FFCP PHASE2:Mm9::chr17:73221016..73221031,+#_de761753f2d00812ad5ddc3eae08716bp@chr17:73221016..73221031, +
3.28e-58FFCP PHASE1:Mm9::chr13:24270118..24270122,-#_de761753f2d00812ad5ddc3eae08716bp@chr13:24270118..24270122, -
3.28e-58FFCP PHASE2:Mm9::chr5:31379878..31379883,+#_de761753f2d00812ad5ddc3eae08716bp@chr5:31379878..31379883, +
3.28e-58FFCP PHASE1:Mm9::chrX:130496286..130496293,-#_de761753f2d00812ad5ddc3eae08716bp@chrX:130496286..130496293, -
3.28e-58FFCP PHASE1:Mm9::chr5:110773795..110773801,+#_de761753f2d00812ad5ddc3eae08716bp@chr5:110773795..110773801, +
3.28e-58FFCP PHASE2:Mm9::chr1:165219453..165219469,-#_de761753f2d00812ad5ddc3eae08716bp11@Prrx1
3.28e-58FFCP PHASE1:Mm9::chr14:69116075..69116107,-#_de761753f2d00812ad5ddc3eae08716bp@chr14:69116075..69116107, -
3.28e-58FFCP PHASE1:Mm9::chr11:17224952..17224968,+#_de761753f2d00812ad5ddc3eae08716bp@chr11:17224952..17224968, +
3.28e-58FFCP PHASE2:Mm9::chr1:90155707..90155720,+#_de761753f2d00812ad5ddc3eae08716bp@chr1:90155707..90155720, +
3.28e-58FFCP PHASE1:Mm9::chr14:51627586..51627595,+#_de761753f2d00812ad5ddc3eae08716bp4@Rnase10
3.28e-58FFCP PHASE2:Mm9::chr10:52101299..52101305,+#_de761753f2d00812ad5ddc3eae08716bp@chr10:52101299..52101305, +
3.28e-58FFCP PHASE1:Mm9::chr1:192816674..192816714,+#_de761753f2d00812ad5ddc3eae08716bp@chr1:192816674..192816714, +
3.28e-58FFCP PHASE2:Mm9::chr6:54359310..54359337,-#_de761753f2d00812ad5ddc3eae08716bp@chr6:54359310..54359337, -
3.28e-58FFCP PHASE2:Mm9::chr13:21383212..21383225,-#_de761753f2d00812ad5ddc3eae08716bp@chr13:21383212..21383225, -
3.28e-58FFCP PHASE1:Mm9::chr13:21383212..21383225,-#_de761753f2d00812ad5ddc3eae08716bp@chr13:21383212..21383225, -
3.28e-58FFCP PHASE2:Mm9::chr14:66521865..66521876,+#_de761753f2d00812ad5ddc3eae08716bp@chr14:66521865..66521876, +
3.28e-58FFCP PHASE2:Mm9::chr5:75559819..75559830,+#_de761753f2d00812ad5ddc3eae08716bp@chr5:75559819..75559830, +
3.28e-58FFCP PHASE1:Mm9::chr1:90156002..90156013,+#_de761753f2d00812ad5ddc3eae08716bp@chr1:90156002..90156013, +
3.28e-58FFCP PHASE1:Mm9::chr16:23308115..23308126,+#_de761753f2d00812ad5ddc3eae08716bp@chr16:23308115..23308126, +
3.28e-58FFCP PHASE2:Mm9::chr2:75866210..75866235,+#_de761753f2d00812ad5ddc3eae08716bp@chr2:75866210..75866235, +
3.28e-58FFCP PHASE2:Mm9::chr2:164479340..164479350,+#_de761753f2d00812ad5ddc3eae08716bp@chr2:164479340..164479350, +
3.28e-58FFCP PHASE2:Mm9::chr17:24670830..24670845,+#_de761753f2d00812ad5ddc3eae08716bp@chr17:24670830..24670845, +
3.28e-58FFCP PHASE2:Mm9::chr1:89596972..89596981,+#_de761753f2d00812ad5ddc3eae08716bp@chr1:89596972..89596981, +
3.28e-58FFCP PHASE1:Mm9::chr1:155698178..155698191,-#_de761753f2d00812ad5ddc3eae08716bp@chr1:155698178..155698191, -
3.28e-58FFCP PHASE1:Mm9::chr18:44261480..44261486,+#_de761753f2d00812ad5ddc3eae08716bp@chr18:44261480..44261486, +
3.28e-58FFCP PHASE2:Mm9::chr12:16663110..16663116,+#_de761753f2d00812ad5ddc3eae08716bp3@Ntsr2
3.28e-58FFCP PHASE2:Mm9::chr8:96014490..96014496,+#_de761753f2d00812ad5ddc3eae08716bp@chr8:96014490..96014496, +
3.28e-58FFCP PHASE1:Mm9::chr9:35657557..35657582,-#_de761753f2d00812ad5ddc3eae08716bp2@Gm3428
3.28e-58FFCP PHASE2:Mm9::chr8:23057222..23057234,+#_de761753f2d00812ad5ddc3eae08716bp1@Defb13
3.28e-58FFCP PHASE1:Mm9::chr2:164464249..164464258,-#_de761753f2d00812ad5ddc3eae08716bp@chr2:164464249..164464258, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure consisting of either of a pair of longitudinal ducts which carry urine and in males, sperm, to the cloaca.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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