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{{UBERON
{{UBERON
|id=UBERON:0003080
|alt_id=UBERON:XAO_0000307-ZFA_0007038
|name=anterior neural tube
|namespace=
|def=
|xref=AAO:0011012;;TAO:0007038;;VHOG:0001384;;XAO:0000307;;ZFA:0007038
|is_a=UBERON:0005423
|synonym=
|comment=editor note: TODO - add grouping class for the anterior end of the neural tube at all stages
|comment=editor note: TODO - add grouping class for the anterior end of the neural tube at all stages
|alt_id=UBERON:XAO_0000307-ZFA_0007038
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0003056
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003080
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=anterior neural tube
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922;;UBERON:0001049
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=AAO:0011012;;TAO:0007038;;VHOG:0001384;;XAO:0000307;;ZFA:0007038
}}
}}

Latest revision as of 17:37, 12 September 2014

Name:anterior neural tube
Namespace:FANTOM
Xrefs:
links:

AAO:0011012
TAO:0007038
VHOG:0001384
XAO:0000307

ZFA:0007038
Comments:editor note: TODO - add grouping class for the anterior end of the neural tube at all stages
Alt_id: UBERON:XAO_0000307-ZFA_0007038

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0003056(pre-chordal neural plate)
part_of:UBERON:0000922(embryo),UBERON:0001049(neural tube)



Children

develops from:UBERON:0001890 (forebrain),UBERON:0009616 (presumptive midbrain)
part of:UBERON:0010286 (midbrain neural tube)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003080 (anterior neural tube), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.11e-141FFCP PHASE2:Hg19::chr5:89977201..89977236,+#_e2649dc7762f54427ba5df30ccaf35e0p@chr5:89977201..89977236, +
6.11e-141FFCP PHASE1:Hg19::chr5:89977201..89977236,+#_e2649dc7762f54427ba5df30ccaf35e0p@chr5:89977201..89977236, +
2.38e-133FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_774fbaef1efae2728dcf0876dca6354fp5@ST8SIA3
2.38e-133FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_774fbaef1efae2728dcf0876dca6354fp5@ST8SIA3
6.8e-130FFCP PHASE2:Hg19::chr6:12717031..12717057,+#_9344089f23497000b447e7c400352308p5@PHACTR1
6.8e-130FFCP PHASE1:Hg19::chr6:12717031..12717057,+#_9344089f23497000b447e7c400352308p5@PHACTR1
2.27e-128FFCP PHASE1:Hg19::chr6:12716992..12717005,+#_b546dadf3e2e05d4842c102f2dc8324ap3@PHACTR1
2.27e-128FFCP PHASE2:Hg19::chr6:12716992..12717005,+#_b546dadf3e2e05d4842c102f2dc8324ap3@PHACTR1
6.39e-128FFCP PHASE2:Hg19::chr10:104178839..104178855,-#_228839b54907fe78ee65b8d036f93287p6@PSD
6.39e-128FFCP PHASE1:Hg19::chr10:104178839..104178855,-#_228839b54907fe78ee65b8d036f93287p6@PSD
7.77e-125FFCP PHASE2:Hg19::chr20:61806320..61806344,+#_5c4bba0c810765174b2520b9944cd514p@chr20:61806320..61806344, +
7.77e-125FFCP PHASE1:Hg19::chr20:61806320..61806344,+#_5c4bba0c810765174b2520b9944cd514p@chr20:61806320..61806344, +
3.82e-123FFCP PHASE1:Hg19::chr19:35633957..35633969,+#_48410c44bdfa3dc22af6c8b539657079p2@FXYD7
3.82e-123FFCP PHASE2:Hg19::chr19:35633957..35633969,+#_48410c44bdfa3dc22af6c8b539657079p2@FXYD7
1.09e-121FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_1b77d3db036407389b6dddf7d4712b18p1@NR2E1
1.09e-121FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_1b77d3db036407389b6dddf7d4712b18p1@NR2E1
2.87e-118FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_76a2361153a5dc31c44c26b7b7441035p5@OPCML
2.87e-118FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_76a2361153a5dc31c44c26b7b7441035p5@OPCML
7.25e-118FFCP PHASE1:Hg19::chr7:154002369..154002398,+#_a7e7e8595e8794a39fcb0a995b63cf1ep4@DPP6
7.25e-118FFCP PHASE2:Hg19::chr7:154002369..154002398,+#_a7e7e8595e8794a39fcb0a995b63cf1ep4@DPP6
8.87e-118FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_cb197bd74462a1557abe05d56a103db7p9@GPM6B
8.87e-118FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_cb197bd74462a1557abe05d56a103db7p9@GPM6B
1.66e-117FFCP PHASE1:Hg19::chr4:6514469..6514483,-#_c9118e711f4cb6c477db69b69e8213cfp@chr4:6514469..6514483, -
1.66e-117FFCP PHASE2:Hg19::chr4:6514469..6514483,-#_c9118e711f4cb6c477db69b69e8213cfp@chr4:6514469..6514483, -
2.75e-117FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_abdd473b819d667a4e5160f2b810338cp3@GRIN2B
2.75e-117FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_abdd473b819d667a4e5160f2b810338cp3@GRIN2B
2.82e-116FFCP PHASE1:Hg19::chr6:12717819..12717851,+#_4dec82bfe2dba7f39d24d607c56df46dp4@PHACTR1
2.82e-116FFCP PHASE2:Hg19::chr6:12717819..12717851,+#_4dec82bfe2dba7f39d24d607c56df46dp4@PHACTR1
2.93e-116FFCP PHASE2:Hg19::chr8:104831416..104831427,+#_cdf4db3105e7f0da57854a98f888da3ep8@RIMS2
2.93e-116FFCP PHASE1:Hg19::chr8:104831416..104831427,+#_cdf4db3105e7f0da57854a98f888da3ep8@RIMS2
5.58e-116FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_156ef020ae889ed8efffa9f41a10bcdap8@LRRC7
5.58e-116FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_156ef020ae889ed8efffa9f41a10bcdap8@LRRC7
6.52e-116FFCP PHASE2:Hg19::chr1:35391249..35391269,-#_9b434ddc0ba98e5d60b82474de71561ap4@DLGAP3
6.52e-116FFCP PHASE1:Hg19::chr1:35391249..35391269,-#_9b434ddc0ba98e5d60b82474de71561ap4@DLGAP3
6.61e-116FFCP PHASE2:Hg19::chr6:12717801..12717817,+#_33260ed272125080623f068e86c40601p8@PHACTR1
6.61e-116FFCP PHASE1:Hg19::chr6:12717801..12717817,+#_33260ed272125080623f068e86c40601p8@PHACTR1
5.28e-115FFCP PHASE1:Hg19::chr7:111424462..111424496,-#_08b3e530347ee531a198b2063709b092p3@DOCK4
5.28e-115FFCP PHASE2:Hg19::chr7:111424462..111424496,-#_08b3e530347ee531a198b2063709b092p3@DOCK4
5.97e-115FFCP PHASE2:Hg19::chr5:89936560..89936586,+#_c18c6b431ae38ec9353efd2748897b17p3@GPR98
5.97e-115FFCP PHASE1:Hg19::chr5:89936560..89936586,+#_c18c6b431ae38ec9353efd2748897b17p3@GPR98
1.02e-114FFCP PHASE2:Hg19::chr1:35391417..35391476,-#_89e66c4b017899357b3f9061e67015e1p2@DLGAP3
1.02e-114FFCP PHASE1:Hg19::chr1:35391417..35391476,-#_89e66c4b017899357b3f9061e67015e1p2@DLGAP3
1.06e-114FFCP PHASE2:Hg19::chr16:14280513..14280524,+#_eabd0b815fed076dba45710c9636254cp5@MKL2
1.06e-114FFCP PHASE1:Hg19::chr16:14280513..14280524,+#_eabd0b815fed076dba45710c9636254cp5@MKL2
8.42e-114FFCP PHASE1:Hg19::chr6:97753454..97753523,+#_e5d88532239cc2e9f6454bada316d90cp1@uc003ppd.1
8.42e-114FFCP PHASE2:Hg19::chr6:97753454..97753523,+#_e5d88532239cc2e9f6454bada316d90cp1@uc003ppd.1
3.53e-113FFCP PHASE1:Hg19::chr1:70035018..70035044,+#_46e7094214646fda7663fc1dd21c1a22p@chr1:70035018..70035044, +
3.53e-113FFCP PHASE2:Hg19::chr1:70035018..70035044,+#_46e7094214646fda7663fc1dd21c1a22p@chr1:70035018..70035044, +
5.22e-113FFCP PHASE2:Hg19::chr4:46392101..46392112,-#_241a8de06712fa99e387500d2db10792p6@GABRA2
5.22e-113FFCP PHASE1:Hg19::chr4:46392101..46392112,-#_241a8de06712fa99e387500d2db10792p6@GABRA2
5.23e-113FFCP PHASE2:Hg19::chr12:120242250..120242273,-#_69d6097fb8c5d1f88bf86e526b93eb2bp6@CIT
5.23e-113FFCP PHASE1:Hg19::chr12:120242250..120242273,-#_69d6097fb8c5d1f88bf86e526b93eb2bp6@CIT
1.08e-112FFCP PHASE2:Hg19::chr19:49016319..49016405,-#_8ee78d2c39266f29cfc9b52bd1eb6f2fp2@LMTK3
1.08e-112FFCP PHASE1:Hg19::chr19:49016319..49016405,-#_8ee78d2c39266f29cfc9b52bd1eb6f2fp2@LMTK3
1.26e-112FFCP PHASE2:Hg19::chrX:13835472..13835483,-#_b2df44b0a49859bb0e5ae6f6295cbcf8p10@GPM6B
1.26e-112FFCP PHASE1:Hg19::chrX:13835472..13835483,-#_b2df44b0a49859bb0e5ae6f6295cbcf8p10@GPM6B
1.39e-112FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_85d086a568a8d2ba3f24c3f714d75cc6p@chr5:80255907..80255942, +
1.39e-112FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_85d086a568a8d2ba3f24c3f714d75cc6p@chr5:80255907..80255942, +
1.42e-112FFCP PHASE1:Hg19::chr17:61194578..61194599,+#_d5c284d900dd5193b37fe3838c4e9a1bp@chr17:61194578..61194599, +
1.42e-112FFCP PHASE2:Hg19::chr17:61194578..61194599,+#_d5c284d900dd5193b37fe3838c4e9a1bp@chr17:61194578..61194599, +
1.66e-112FFCP PHASE2:Hg19::chr5:89977181..89977199,+#_8f40b91e5840ef8d33a10e65ad440195p@chr5:89977181..89977199, +
1.66e-112FFCP PHASE1:Hg19::chr5:89977181..89977199,+#_8f40b91e5840ef8d33a10e65ad440195p@chr5:89977181..89977199, +
6.89e-112FFCP PHASE2:Hg19::chr7:94843638..94843650,-#_10c324b8c54ad1bc2b6eb590bb71427ap1@ENST00000417881
6.89e-112FFCP PHASE1:Hg19::chr7:94843638..94843650,-#_10c324b8c54ad1bc2b6eb590bb71427ap1@ENST00000417881
7.85e-112FFCP PHASE1:Hg19::chr7:154002341..154002355,+#_c1376d3e542867c540c52824e5814d88p6@DPP6
7.85e-112FFCP PHASE2:Hg19::chr7:154002341..154002355,+#_c1376d3e542867c540c52824e5814d88p6@DPP6
1.02e-111FFCP PHASE1:Hg19::chr5:27038708..27038730,-#_3ee37acdba17066aad7cf504f82cb8dep2@CDH9
1.02e-111FFCP PHASE2:Hg19::chr5:27038708..27038730,-#_3ee37acdba17066aad7cf504f82cb8dep2@CDH9
1.42e-111FFCP PHASE2:Hg19::chr2:3134361..3134374,-#_d574f366e8057463dbd17666615ffd3bp@chr2:3134361..3134374, -
1.42e-111FFCP PHASE1:Hg19::chr2:3134361..3134374,-#_d574f366e8057463dbd17666615ffd3bp@chr2:3134361..3134374, -
1.94e-111FFCP PHASE2:Hg19::chr6:155538132..155538147,+#_0e4dd3d2fdd198e6223e02cd8c237502p3@TIAM2
1.94e-111FFCP PHASE1:Hg19::chr6:155538132..155538147,+#_0e4dd3d2fdd198e6223e02cd8c237502p3@TIAM2
3.18e-111FFCP PHASE2:Hg19::chr3:124103620..124103704,+#_10aaae381c30c70bf9bc817207f223b0p1@KALRN
3.18e-111FFCP PHASE1:Hg19::chr3:124103620..124103704,+#_10aaae381c30c70bf9bc817207f223b0p1@KALRN
4.18e-111FFCP PHASE1:Hg19::chr1:177134053..177134069,-#_7811d7c9931e5fbe45de0f9510d928e6p4@ASTN1
4.18e-111FFCP PHASE2:Hg19::chr1:177134053..177134069,-#_7811d7c9931e5fbe45de0f9510d928e6p4@ASTN1
5.69e-111FFCP PHASE1:Hg19::chr11:132982177..132982181,-#_6c10a94ca7ef7b1b6b5f391111406776p@chr11:132982177..132982181, -
5.69e-111FFCP PHASE2:Hg19::chr11:132982177..132982181,-#_6c10a94ca7ef7b1b6b5f391111406776p@chr11:132982177..132982181, -
7.54e-111FFCP PHASE2:Hg19::chr8:63161215..63161235,+#_150f36583c5cf3628bb96333907bedeep5@NKAIN3
7.54e-111FFCP PHASE1:Hg19::chr8:63161215..63161235,+#_150f36583c5cf3628bb96333907bedeep5@NKAIN3
1.27e-110FFCP PHASE2:Hg19::chr12:99548462..99548482,-#_cf926b3d3779fc5bedc49ade3c715261p9@ANKS1B
1.27e-110FFCP PHASE1:Hg19::chr12:99548462..99548482,-#_cf926b3d3779fc5bedc49ade3c715261p9@ANKS1B
1.38e-110FFCP PHASE1:Hg19::chr15:80735246..80735321,+#_369bb896aa15d03d33c7e7ee293f341ep3@ARNT2
1.38e-110FFCP PHASE2:Hg19::chr15:80735246..80735321,+#_369bb896aa15d03d33c7e7ee293f341ep3@ARNT2
2.12e-110FFCP PHASE2:Hg19::chr20:1791316..1791339,-#_f6b96438edaa336aa0cbee1ee477f80dp@chr20:1791316..1791339, -
2.12e-110FFCP PHASE1:Hg19::chr20:1791316..1791339,-#_f6b96438edaa336aa0cbee1ee477f80dp@chr20:1791316..1791339, -
2.27e-110FFCP PHASE2:Hg19::chr9:112629781..112629806,+#_a39114d09c4ca310230e6febb2a9bbe5p14@PALM2-AKAP2
2.27e-110FFCP PHASE1:Hg19::chr9:112629781..112629806,+#_a39114d09c4ca310230e6febb2a9bbe5p14@PALM2-AKAP2
3.45e-110FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_164087392f97c15f7c16a495f9ded22dp6@GPM6B
3.45e-110FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_164087392f97c15f7c16a495f9ded22dp6@GPM6B
4.23e-110FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_433c9ce21cc8623d9511e94e2533218fp1@ENST00000412957
4.23e-110FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_433c9ce21cc8623d9511e94e2533218fp1@ENST00000412957
5.12e-110FFCP PHASE2:Hg19::chr12:99548342..99548354,-#_92393551592767ac179e363e3f2b01a6p7@ANKS1B
5.12e-110FFCP PHASE1:Hg19::chr12:99548342..99548354,-#_92393551592767ac179e363e3f2b01a6p7@ANKS1B
7.19e-110FFCP PHASE2:Hg19::chr20:1791288..1791304,-#_afedbe1cb0a143dd1a7b0eb58f183efep@chr20:1791288..1791304, -
7.19e-110FFCP PHASE1:Hg19::chr20:1791288..1791304,-#_afedbe1cb0a143dd1a7b0eb58f183efep@chr20:1791288..1791304, -
9.49e-110FFCP PHASE2:Hg19::chr21:43917145..43917190,-#_bd4f3a986eacd3e29cac52c0fa1f1da2p@chr21:43917145..43917190, -
9.49e-110FFCP PHASE1:Hg19::chr21:43917145..43917190,-#_bd4f3a986eacd3e29cac52c0fa1f1da2p@chr21:43917145..43917190, -
1.01e-109FFCP PHASE2:Hg19::chr6:155538093..155538109,+#_fd650a941d37fbda358a2051e2a9f86fp2@TIAM2
1.01e-109FFCP PHASE1:Hg19::chr6:155538093..155538109,+#_fd650a941d37fbda358a2051e2a9f86fp2@TIAM2

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