Personal tools

UBERON:0003081: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0003081 |name=lateral plate mesoderm |namespace= |def="Portion of the middle of the three primary germ layers of the embryo that resides on the periphe...")
 
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0003081
|alt_id=UBERON:XAO_0000311-ZFA_0000121
|name=lateral plate mesoderm
|namespace=
|def="Portion of the middle of the three primary germ layers of the embryo that resides on the periphery of the embryo, is continuous with the extra-embryonic mesoderm, splits into two layers enclosing the intra-embryonic coelom, and gives rise to body wall structures[MP]." [MP:0010117, Wikipedia:Lateral_plate_mesoderm]
|xref=AAO:0010574;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png;;ncithesaurus:Lateral_Mesoderm;;SCTID:361477005;;TAO:0000121;;TAO:0001065;;VHOG:0000118;;XAO:0000311;;ZFA:0000121
|is_a=UBERON:0005423
|synonym="lateral mesoderm" EXACT [GO:0048368];;"lateral plate" RELATED []
|comment=
|comment=
|alt_id=UBERON:XAO_0000311-ZFA_0000121
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Portion of the middle of the three primary germ layers of the embryo that resides on the periphery of the embryo, is continuous with the extra-embryonic mesoderm, splits into two layers enclosing the intra-embryonic coelom, and gives rise to body wall structures[MP]." [MP:0010117, Wikipedia:Lateral_plate_mesoderm]
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0000926
|develops_from=UBERON:0000926
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003081
|is_a=UBERON:0004120 ;;UBERON:0005291 ;;UBERON:0007524
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0000922;;UBERON:0000926
|name=lateral plate mesoderm
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000926
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Portion of mesoderm traditionally thought to give rise to limb bones and parts of the girdles.[AAO]" xsd:string
|subset=uberon_slim
|synonym="lateral mesoderm" EXACT [GO:0048368];;"lateral plate" RELATED [];;"mesoderma laminae lateralis" RELATED LATIN [Wikipedia:Lateral_plate_mesoderm]
|union_of=
|xref=AAO:0010574;;http://upload.wikimedia.org/wikipedia/commons/6/64/Gray19_with_color.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/64/Gray19_with_color.png/200px-Gray19_with_color.png;;ncithesaurus:Lateral_Mesoderm;;SCTID:361477005;;TAO:0000121;;VHOG:0000118;;XAO:0000311;;ZFA:0000121
}}
}}

Latest revision as of 17:37, 12 September 2014

Name:lateral plate mesoderm
Namespace:FANTOM
Definition:"Portion of the middle of the three primary germ layers of the embryo that resides on the periphery of the embryo, is continuous with the extra-embryonic mesoderm, splits into two layers enclosing the intra-embryonic coelom, and gives rise to body wall structures[MP]." [MP:0010117, Wikipedia:Lateral_plate_mesoderm]
Xrefs:
links:

AAO:0010574
[ Gray19_with_color.png Gray19_with_color.png]
[ 200px-Gray19_with_color.png 200px-Gray19_with_color.png]
ncithesaurus:Lateral_Mesoderm
SCTID:361477005
TAO:0000121
VHOG:0000118
XAO:0000311

ZFA:0000121
Synonyms: "lateral mesoderm" EXACT [GO:0048368]
"lateral plate" RELATED []
"mesoderma laminae lateralis" RELATED LATIN [Wikipedia:Lateral_plate_mesoderm]
Alt_id: UBERON:XAO_0000311-ZFA_0000121
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0005291(embryonic tissue),UBERON:0007524(dense mesenchyme tissue)
develops_from:UBERON:0000926(mesoderm)
part_of:UBERON:0000926(mesoderm)



Children

develops from:UBERON:0003061 (blood island),UBERON:0003084 (heart primordium),UBERON:0003887 (intraembryonic coelom),UBERON:0004381 (skeleton of limb),UBERON:0005728 (extraembryonic mesoderm),UBERON:0011582 (paired limb/fin skeleton)
part of:UBERON:0004140 (primary heart field),UBERON:0004871 (somatic layer of lateral plate mesoderm),UBERON:0004872 (splanchnic layer of lateral plate mesoderm),UBERON:0004874 (somatopleure),UBERON:0005732 (limb/fin field),UBERON:0006258 (lateral plate mesenchyme),UBERON:0009881 (anterior lateral plate mesoderm)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003081 (lateral plate mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.25e-50FFCP PHASE2:Hg19::chrX:153637522..153637533,-#_dbd8038870c12e5693b6e6e6f56f8dc7p4@DNASE1L1
2.25e-50FFCP PHASE1:Hg19::chrX:153637522..153637533,-#_dbd8038870c12e5693b6e6e6f56f8dc7p4@DNASE1L1
7.07e-50FFCP PHASE2:Hg19::chrX:153637534..153637567,-#_f7f443f46c32ec415b97e5a2aa785767p1@DNASE1L1
7.07e-50FFCP PHASE1:Hg19::chrX:153637534..153637567,-#_f7f443f46c32ec415b97e5a2aa785767p1@DNASE1L1
6.88e-49FFCP PHASE2:Hg19::chr10:31288370..31288393,-#_a2eebd831a9fbfb6928f5a189d01616ep3@ZNF438
6.88e-49FFCP PHASE1:Hg19::chr10:31288370..31288393,-#_a2eebd831a9fbfb6928f5a189d01616ep3@ZNF438
1.53e-48FFCP PHASE2:Hg19::chr3:50273625..50273655,+#_2f0842eaeec319494043b69337ab6c92p1@GNAI2
1.53e-48FFCP PHASE1:Hg19::chr3:50273625..50273655,+#_2f0842eaeec319494043b69337ab6c92p1@GNAI2
2.09e-47FFCP PHASE1:Hg19::chr15:75871275..75871295,-#_a086ead6e1448e9369f923fc0fc5c440p4@PTPN9
2.09e-47FFCP PHASE2:Hg19::chr15:75871275..75871295,-#_a086ead6e1448e9369f923fc0fc5c440p4@PTPN9
5.83e-47FFCP PHASE1:Hg19::chr3:69402726..69402747,-#_09afad11ad645117b799b9cc1aa6fccfp6@FRMD4B
5.83e-47FFCP PHASE2:Hg19::chr3:69402726..69402747,-#_09afad11ad645117b799b9cc1aa6fccfp6@FRMD4B
5.57e-46FFCP PHASE2:Hg19::chr16:50313426..50313459,+#_64cd5f76f2918ce3e24567425dc6c434p@chr16:50313426..50313459, +
5.57e-46FFCP PHASE1:Hg19::chr16:50313426..50313459,+#_64cd5f76f2918ce3e24567425dc6c434p@chr16:50313426..50313459, +
1.38e-45FFCP PHASE2:Hg19::chr20:23067005..23067021,-#_f803be2db351d5e95855506d01d4b376p2@CD93
1.38e-45FFCP PHASE1:Hg19::chr20:23067005..23067021,-#_f803be2db351d5e95855506d01d4b376p2@CD93
1.41e-45FFCP PHASE1:Hg19::chr10:31288329..31288353,-#_65e7f3eb0a9f2473a9cad4b8f4f491ecp7@ZNF438
1.41e-45FFCP PHASE2:Hg19::chr10:31288329..31288353,-#_65e7f3eb0a9f2473a9cad4b8f4f491ecp7@ZNF438
3.68e-45FFCP PHASE1:Hg19::chr8:38663025..38663040,+#_c304fdbdfa4a3a773acb138b664adf91p15@TACC1
3.68e-45FFCP PHASE2:Hg19::chr8:38663025..38663040,+#_c304fdbdfa4a3a773acb138b664adf91p15@TACC1
8.24e-45FFCP PHASE2:Hg19::chr4:103747936..103747993,-#_62398bb3a8c0659d831c663ddb204b6dp6@UBE2D3
8.24e-45FFCP PHASE1:Hg19::chr4:103747936..103747993,-#_62398bb3a8c0659d831c663ddb204b6dp6@UBE2D3
8.31e-45FFCP PHASE1:Hg19::chr19:54784461..54784484,-#_8c9dda374901ab4fcf003cab0861fff2p2@LILRB2
8.31e-45FFCP PHASE2:Hg19::chr19:54784461..54784484,-#_8c9dda374901ab4fcf003cab0861fff2p2@LILRB2
8.95e-45FFCP PHASE2:Hg19::chr6:134694635..134694653,-#_2cb9d807c167755f151c18d0ae665636p@chr6:134694635..134694653, -
8.95e-45FFCP PHASE1:Hg19::chr6:134694635..134694653,-#_2cb9d807c167755f151c18d0ae665636p@chr6:134694635..134694653, -
1.04e-44FFCP PHASE2:Hg19::chr6:30653819..30653835,-#_262115374de766c53ad720a33ba57245p10@PPP1R18
1.04e-44FFCP PHASE1:Hg19::chr6:30653819..30653835,-#_262115374de766c53ad720a33ba57245p10@PPP1R18
2.36e-44FFCP PHASE2:Hg19::chr1:150724282..150724308,-#_94683397115456a49800a8396cf9f2a4p8@CTSS
2.36e-44FFCP PHASE1:Hg19::chr1:150724282..150724308,-#_94683397115456a49800a8396cf9f2a4p8@CTSS
3.24e-44FFCP PHASE1:Hg19::chr3:69402828..69402852,-#_60643d362291f678545994522d594b70p8@FRMD4B
3.24e-44FFCP PHASE2:Hg19::chr3:69402828..69402852,-#_60643d362291f678545994522d594b70p8@FRMD4B
6.06e-44FFCP PHASE2:Hg19::chr17:7077765..7077789,-#_5c33f2306441160728cc2269393f0c13p@chr17:7077765..7077789, -
6.06e-44FFCP PHASE1:Hg19::chr17:7077765..7077789,-#_5c33f2306441160728cc2269393f0c13p@chr17:7077765..7077789, -
9.49e-44FFCP PHASE1:Hg19::chr2:119726719..119726744,+#_134550ef7b9b5d646f3096168a2e43efp@chr2:119726719..119726744, +
9.49e-44FFCP PHASE2:Hg19::chr2:119726719..119726744,+#_134550ef7b9b5d646f3096168a2e43efp@chr2:119726719..119726744, +
1.94e-43FFCP PHASE2:Hg19::chr1:17944856..17944906,+#_bf88457975c199be86b028826c970deep3@ARHGEF10L
1.94e-43FFCP PHASE1:Hg19::chr1:17944856..17944906,+#_bf88457975c199be86b028826c970deep3@ARHGEF10L
3.01e-43FFCP PHASE1:Hg19::chr2:38358217..38358244,+#_1de9fdf4e86a7de1cbc264aabfc7e58bp1@CYP1B1-AS1
3.01e-43FFCP PHASE2:Hg19::chr2:38358217..38358244,+#_1de9fdf4e86a7de1cbc264aabfc7e58bp1@CYP1B1-AS1
5.01e-43FFCP PHASE2:Hg19::chr10:20105868..20105875,+#_53690ad4147bb3e0c58a9dabdd15104cp8@PLXDC2
5.01e-43FFCP PHASE1:Hg19::chr10:20105868..20105875,+#_53690ad4147bb3e0c58a9dabdd15104cp8@PLXDC2
5.09e-43FFCP PHASE1:Hg19::chr1:1711415..1711426,-#_a6098b3e64c84b84eef974ac5ab3c9acp4@NADK
5.09e-43FFCP PHASE2:Hg19::chr1:1711415..1711426,-#_a6098b3e64c84b84eef974ac5ab3c9acp4@NADK
5.41e-43FFCP PHASE1:Hg19::chr19:47823947..47823977,+#_1a702e3365cc427e120bc55ce4ecb35fp@chr19:47823947..47823977, +
5.41e-43FFCP PHASE2:Hg19::chr19:47823947..47823977,+#_1a702e3365cc427e120bc55ce4ecb35fp@chr19:47823947..47823977, +
8.82e-43FFCP PHASE1:Hg19::chr7:99971180..99971191,+#_856886eea70b7d295f4525c4cbee7a63p3@PILRA
8.82e-43FFCP PHASE2:Hg19::chr7:99971180..99971191,+#_856886eea70b7d295f4525c4cbee7a63p3@PILRA
1.8e-42FFCP PHASE1:Hg19::chr10:97457378..97457404,+#_ae46b3c81b576a02f90fa065e6053d89p@chr10:97457378..97457404, +
1.8e-42FFCP PHASE2:Hg19::chr10:97457378..97457404,+#_ae46b3c81b576a02f90fa065e6053d89p@chr10:97457378..97457404, +
2.49e-42FFCP PHASE1:Hg19::chr21:37802374..37802391,-#_6520ace73734c7b64d3f80aeb63b940cp@chr21:37802374..37802391, -
2.49e-42FFCP PHASE2:Hg19::chr21:37802374..37802391,-#_6520ace73734c7b64d3f80aeb63b940cp@chr21:37802374..37802391, -
3.17e-42FFCP PHASE1:Hg19::chr9:120466650..120466659,+#_c0d8acd46bad509e7fba9274ae621f62p6@TLR4
3.17e-42FFCP PHASE2:Hg19::chr9:120466650..120466659,+#_c0d8acd46bad509e7fba9274ae621f62p6@TLR4
5.49e-42FFCP PHASE1:Hg19::chr2:71295766..71295788,+#_15431ba439bc11a4b22ca6979a36ac0ap1@NAGK
5.49e-42FFCP PHASE2:Hg19::chr2:71295766..71295788,+#_15431ba439bc11a4b22ca6979a36ac0ap1@NAGK
6.5e-42FFCP PHASE1:Hg19::chr19:41859814..41859837,-#_04f16e4a62bf9efd414e6fc1b84acf39p1@TGFB1
6.5e-42FFCP PHASE2:Hg19::chr19:41859814..41859837,-#_04f16e4a62bf9efd414e6fc1b84acf39p1@TGFB1
6.65e-42FFCP PHASE1:Hg19::chr19:18283959..18283993,+#_e5e709a1a82cbaf33dec5309089cdf90p@chr19:18283959..18283993, +
6.65e-42FFCP PHASE2:Hg19::chr19:18283959..18283993,+#_e5e709a1a82cbaf33dec5309089cdf90p@chr19:18283959..18283993, +
8.29e-42FFCP PHASE1:Hg19::chr5:156534291..156534357,-#_641e3b47bfdf3b888b0ed7637c0f6162p4@HAVCR2
8.29e-42FFCP PHASE2:Hg19::chr5:156534291..156534357,-#_641e3b47bfdf3b888b0ed7637c0f6162p4@HAVCR2
8.45e-42FFCP PHASE2:Hg19::chr7:139586209..139586213,+#_705d59a69af5404cf73c62cc62f171e0p@chr7:139586209..139586213, +
8.45e-42FFCP PHASE1:Hg19::chr7:139586209..139586213,+#_705d59a69af5404cf73c62cc62f171e0p@chr7:139586209..139586213, +
9.34e-42FFCP PHASE2:Hg19::chr8:90770100..90770114,+#_e83b4d207d948425dac13b33732465e8p2@RIPK2
9.34e-42FFCP PHASE1:Hg19::chr8:90770100..90770114,+#_e83b4d207d948425dac13b33732465e8p2@RIPK2
1.14e-41FFCP PHASE1:Hg19::chr1:150705526..150705571,-#_458423e6b1f221eeac202c9e62642756p@chr1:150705526..150705571, -
1.14e-41FFCP PHASE2:Hg19::chr1:150705526..150705571,-#_458423e6b1f221eeac202c9e62642756p@chr1:150705526..150705571, -
1.14e-41FFCP PHASE1:Hg19::chr10:70847852..70847873,+#_458423e6b1f221eeac202c9e62642756p1@SRGN
1.14e-41FFCP PHASE2:Hg19::chr10:70847852..70847873,+#_458423e6b1f221eeac202c9e62642756p1@SRGN
1.16e-41FFCP PHASE2:Hg19::chr22:22307182..22307197,-#_c038e04590d965e0ece0480c7d543c30p2@PPM1F
1.16e-41FFCP PHASE1:Hg19::chr22:22307182..22307197,-#_c038e04590d965e0ece0480c7d543c30p2@PPM1F
1.4e-41FFCP PHASE2:Hg19::chr2:201994123..201994147,+#_4c6337844b902b616ca5160286e3c0a9p9@CFLAR
1.4e-41FFCP PHASE1:Hg19::chr2:201994123..201994147,+#_4c6337844b902b616ca5160286e3c0a9p9@CFLAR
1.5e-41FFCP PHASE2:Hg19::chr9:137808181..137808200,+#_60d4f9cecccecb2b910e726ec3dc71dcp@chr9:137808181..137808200, +
1.5e-41FFCP PHASE1:Hg19::chr9:137808181..137808200,+#_60d4f9cecccecb2b910e726ec3dc71dcp@chr9:137808181..137808200, +
1.59e-41FFCP PHASE2:Hg19::chr18:2847062..2847071,+#_89f4858c689e7430e61cb5dce66badc7p7@EMILIN2
1.59e-41FFCP PHASE1:Hg19::chr18:2847062..2847071,+#_89f4858c689e7430e61cb5dce66badc7p7@EMILIN2
1.77e-41FFCP PHASE2:Hg19::chr5:79442172..79442212,-#_1851a3fbe2656b5ef5e3974ff09c95fap@chr5:79442172..79442212, -
1.77e-41FFCP PHASE1:Hg19::chr5:79442172..79442212,-#_1851a3fbe2656b5ef5e3974ff09c95fap@chr5:79442172..79442212, -
2.21e-41FFCP PHASE1:Hg19::chr14:92927376..92927396,+#_cd76e3219ae774de331bb013e30f057dp@chr14:92927376..92927396, +
2.21e-41FFCP PHASE2:Hg19::chr14:92927376..92927396,+#_cd76e3219ae774de331bb013e30f057dp@chr14:92927376..92927396, +
2.4e-41FFCP PHASE1:Hg19::chr17:72542163..72542182,-#_69c21e96ae40e107cd6e2dd53359118ep2@CD300C
2.4e-41FFCP PHASE2:Hg19::chr17:72542163..72542182,-#_69c21e96ae40e107cd6e2dd53359118ep2@CD300C
2.73e-41FFCP PHASE1:Hg19::chr19:18288780..18288808,+#_859db18a981220b55efe7ef4d8dec885p4@IFI30
2.73e-41FFCP PHASE2:Hg19::chr19:18288780..18288808,+#_859db18a981220b55efe7ef4d8dec885p4@IFI30
2.91e-41FFCP PHASE1:Hg19::chr7:44084744..44084800,-#_9cc50f0e4c32f8adc2b8b5b7ad3beeb2p@chr7:44084744..44084800, -
2.91e-41FFCP PHASE2:Hg19::chr7:44084744..44084800,-#_9cc50f0e4c32f8adc2b8b5b7ad3beeb2p@chr7:44084744..44084800, -
4.26e-41FFCP PHASE1:Hg19::chrX:80458085..80458112,+#_94d5734999df06434c58d29b228b0987p7@SH3BGRL
4.26e-41FFCP PHASE2:Hg19::chrX:80458085..80458112,+#_94d5734999df06434c58d29b228b0987p7@SH3BGRL
5.57e-41FFCP PHASE1:Hg19::chr14:23288956..23289020,-#_e22bf949b6455a1afb680bae0195c0c8p3@SLC7A7
5.57e-41FFCP PHASE2:Hg19::chr14:23288956..23289020,-#_e22bf949b6455a1afb680bae0195c0c8p3@SLC7A7
5.77e-41FFCP PHASE2:Hg19::chr14:103587759..103587770,+#_dd8590f311e58f6242c19b74cb1e2130p@chr14:103587759..103587770, +
5.77e-41FFCP PHASE1:Hg19::chr14:103587759..103587770,+#_dd8590f311e58f6242c19b74cb1e2130p@chr14:103587759..103587770, +
6.2e-41FFCP PHASE2:Hg19::chrX:152086449..152086473,+#_37b451f68f2c7d3dcdce7bd11b729466p4@ZNF185
6.2e-41FFCP PHASE1:Hg19::chrX:152086449..152086473,+#_37b451f68f2c7d3dcdce7bd11b729466p4@ZNF185
6.56e-41FFCP PHASE2:Hg19::chr3:194299051..194299068,+#_ffa402a92a307509cc4182a64f26e601p@chr3:194299051..194299068, +
6.56e-41FFCP PHASE1:Hg19::chr3:194299051..194299068,+#_ffa402a92a307509cc4182a64f26e601p@chr3:194299051..194299068, +
7.48e-41FFCP PHASE2:Hg19::chr11:47380465..47380487,-#_6b9082a2e040da7596d86a398d6d8b35p@chr11:47380465..47380487, -
7.48e-41FFCP PHASE1:Hg19::chr11:47380465..47380487,-#_6b9082a2e040da7596d86a398d6d8b35p@chr11:47380465..47380487, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of mesoderm traditionally thought to give rise to limb bones and parts of the girdles.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003081&oldid=3277513"