UBERON:0003513: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=trunk blood vessel | |name=trunk blood vessel | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002100 | |part_of=UBERON:0002100 | ||
Latest revision as of 17:40, 12 September 2014
| Name: | trunk blood vessel | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A blood vessel that is part of a trunk [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"blood vessel of torso" EXACT [OBOL:automatic] "blood vessel of trunk" EXACT [OBOL:automatic] "torso blood vessel" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001981(blood vessel) |
|---|---|
| part_of: | UBERON:0002100(trunk) |
Children
| is a: | UBERON:0003834 (thoracic segment blood vessel),UBERON:0003835 (abdominal segment blood vessel),UBERON:0005622 (right dorsal aorta),UBERON:0005805 (dorsal aorta) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11287-116I9 (Smooth Muscle Cells - Internal Thoracic Artery, donor1)
- 11289-117A2 (Smooth Muscle Cells - Subclavian Artery, donor1)
- 11364-117I5 (Smooth Muscle Cells - Internal Thoracic Artery, donor2)
- 11366-117I7 (Smooth Muscle Cells - Subclavian Artery, donor2)
- 11436-118H5 (Smooth Muscle Cells - Internal Thoracic Artery, donor3)
- 11438-118H7 (Smooth Muscle Cells - Subclavian Artery, donor3)
- 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
- 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
- 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
- 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
... further results Mouse (Mus musculus)
- 11287-116I9 (Smooth Muscle Cells - Internal Thoracic Artery, donor1)
- 11289-117A2 (Smooth Muscle Cells - Subclavian Artery, donor1)
- 11364-117I5 (Smooth Muscle Cells - Internal Thoracic Artery, donor2)
- 11366-117I7 (Smooth Muscle Cells - Subclavian Artery, donor2)
- 11436-118H5 (Smooth Muscle Cells - Internal Thoracic Artery, donor3)
- 11438-118H7 (Smooth Muscle Cells - Subclavian Artery, donor3)
- 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
- 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
- 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
- 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003513 (trunk blood vessel), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:82209805..82209851,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr15:82209805..82209851, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr3:9705000..9705004,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p4@Pag1 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:4336287..4336296,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p8@Map3k8 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:100000226..100000230,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr13:100000226..100000230, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:117829935..117829959,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr11:117829935..117829959, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:93942324..93942342,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr10:93942324..93942342, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:118133901..118133904,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr7:118133901..118133904, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:42915101..42915106,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr9:42915101..42915106, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:60279719..60279737,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr10:60279719..60279737, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr7:118133901..118133904,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr7:118133901..118133904, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:15678147..15678149,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr6:15678147..15678149, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr16:91441786..91441787,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr16:91441786..91441787, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:117737077..117737096,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr11:117737077..117737096, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:35900327..35900366,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr18:35900327..35900366, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:76329688..76329692,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr5:76329688..76329692, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:117101788..117101793,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr7:117101788..117101793, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:75375903..75375931,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr5:75375903..75375931, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr16:11009028..11009039,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p4@Gm4262 |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:21389022..21389032,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr10:21389022..21389032, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr7:109031260..109031268,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr7:109031260..109031268, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35945332..35945335,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr17:35945332..35945335, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:163794592..163794593,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr1:163794592..163794593, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:100890388..100890423,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr4:100890388..100890423, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:86691503..86691504,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr12:86691503..86691504, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:75375903..75375931,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr5:75375903..75375931, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:25530071..25530072,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr8:25530071..25530072, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35106749..35106752,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr17:35106749..35106752, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:91441074..91441080,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr6:91441074..91441080, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35094068..35094092,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr17:35094068..35094092, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:129180613..129180616,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr6:129180613..129180616, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:15678147..15678149,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr6:15678147..15678149, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr7:109031260..109031268,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr7:109031260..109031268, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:85288471..85288502,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr12:85288471..85288502, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:132405466..132405470,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr1:132405466..132405470, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:60398371..60398393,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr18:60398371..60398393, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:88669906..88669914,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr15:88669906..88669914, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr14:101778294..101778296,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr14:101778294..101778296, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35093377..35093381,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr17:35093377..35093381, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:5125608..5125613,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr18:5125608..5125613, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:141645056..141645068,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr4:141645056..141645068, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35945332..35945335,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr17:35945332..35945335, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:116223548..116223551,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr9:116223548..116223551, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:113053257..113053258,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr13:113053257..113053258, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:137570295..137570315,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr1:137570295..137570315, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:33088768..33088773,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr5:33088768..33088773, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:163794592..163794593,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr1:163794592..163794593, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr3:90270007..90270012,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr3:90270007..90270012, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr7:117101788..117101793,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr7:117101788..117101793, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr16:85547242..85547252,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr16:85547242..85547252, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:169549462..169549477,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr2:169549462..169549477, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:127816016..127816021,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr8:127816016..127816021, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:42915185..42915192,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr9:42915185..42915192, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:116223548..116223551,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr9:116223548..116223551, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:114250006..114250039,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr8:114250006..114250039, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:57687477..57687488,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr4:57687477..57687488, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:113550715..113550722,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr13:113550715..113550722, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:138241693..138241697,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr1:138241693..138241697, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:87046930..87046933,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr12:87046930..87046933, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:93895817..93895819,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr10:93895817..93895819, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35106749..35106752,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr17:35106749..35106752, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:186559285..186559288,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr1:186559285..186559288, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:119254092..119254100,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr11:119254092..119254100, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:109223779..109223789,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr11:109223779..109223789, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:43407825..43407830,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr4:43407825..43407830, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:85587155..85587188,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr10:85587155..85587188, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:138241693..138241697,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr1:138241693..138241697, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:34798597..34798606,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr17:34798597..34798606, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:62009160..62009164,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr4:62009160..62009164, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:25364645..25364655,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr12:25364645..25364655, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:85587155..85587188,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr10:85587155..85587188, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:82193340..82193343,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr15:82193340..82193343, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:34549876..34549892,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr6:34549876..34549892, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:100000226..100000230,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr13:100000226..100000230, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:32912678..32912687,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr5:32912678..32912687, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:100890388..100890423,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr4:100890388..100890423, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:169549462..169549477,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr2:169549462..169549477, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:42915185..42915192,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr9:42915185..42915192, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:88237840..88237851,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr12:88237840..88237851, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:25530071..25530072,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr8:25530071..25530072, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr19:29573929..29573932,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr19:29573929..29573932, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:109223756..109223764,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr11:109223756..109223764, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:117829935..117829959,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr11:117829935..117829959, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:87046930..87046933,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr12:87046930..87046933, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:129407463..129407468,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr2:129407463..129407468, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:76329688..76329692,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr5:76329688..76329692, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:113554186..113554192,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr13:113554186..113554192, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:89310639..89310641,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr8:89310639..89310641, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:141645056..141645068,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr4:141645056..141645068, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:111108947..111108951,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr8:111108947..111108951, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:86691530..86691535,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr12:86691530..86691535, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:97402708..97402712,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr15:97402708..97402712, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr6:92938260..92938264,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr6:92938260..92938264, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:65159026..65159034,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr18:65159026..65159034, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr9:62199266..62199267,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr9:62199266..62199267, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:5840965..5840966,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr13:5840965..5840966, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:86335502..86335509,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr4:86335502..86335509, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:39513150..39513152,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr18:39513150..39513152, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:8471698..8471701,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr10:8471698..8471701, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:84756280..84756286,+#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr2:84756280..84756286, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:48822294..48822295,-#_4496c44f15d11b0db3cb2e6f67e2a000 | p@chr17:48822294..48822295, - |
