Personal tools

UBERON:0003835: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0003835
|alt_id=
|name=abdominal segment blood vessel
|namespace=
|def="A blood vessel that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic]
|xref=MA:0000524
|is_a=UBERON:0003513
|synonym="abdominal segment of trunk blood vessel" EXACT [OBOL:automatic];;"blood vessel of abdominal segment of trunk" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A blood vessel that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003835
|is_a=UBERON:0003513
|is_obsolete=
|located_in=
|located_in=
|name=abdominal segment blood vessel
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002417
|part_of=UBERON:0002417
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="abdominal segment of trunk blood vessel" EXACT [OBOL:automatic];;"blood vessel of abdominal segment of trunk" EXACT [OBOL:automatic]
|union_of=
|xref=MA:0000524
}}
}}

Latest revision as of 17:41, 12 September 2014

Name:abdominal segment blood vessel
Namespace:FANTOM
Definition:"A blood vessel that is part of an abdominal segment of trunk [Obol]." [OBOL:automatic]
Xrefs:
links:
MA:0000524
Synonyms: "abdominal segment of trunk blood vessel" EXACT [OBOL:automatic]
"blood vessel of abdominal segment of trunk" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003513(trunk blood vessel)
part_of:UBERON:0002417(abdominal segment of trunk)



Children

is a:UBERON:0003497 (abdomen blood vessel)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results Mouse (Mus musculus)

  • 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
  • 11601-120H8 (Hepatic Sinusoidal Endothelial Cells, donor2)
  • 11682-122H8 (Hepatic Sinusoidal Endothelial Cells, donor3)
  • 11830-124G3 (Mouse hepatic Sinusoidal Endothelial Cells, donor1)
  • 11831-124G4
  • 11832-124G5
  • 13595-146E4 (liver sinusoidal endothelial cells, sham operation, biol_rep1)
  • 13596-146E5 (liver sinusoidal endothelial cells, sham operation, biol_rep2)
  • 13597-146E6 (liver sinusoidal endothelial cells, sham operation, biol_rep3)
  • 13598-146E7 (liver sinusoidal endothelial cells, partial hepatectomy, 02hr, biol_rep1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003835 (abdominal segment blood vessel), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.99e-131FFCP PHASE2:Hg19::chr7:158330204..158330217,+#_dd3bfdb2d1dce4fcfa71f3df476d6b16p2@ENST00000448698
8.99e-131FFCP PHASE1:Hg19::chr7:158330204..158330217,+#_dd3bfdb2d1dce4fcfa71f3df476d6b16p2@ENST00000448698
3.07e-86FFCP PHASE2:Mm9::chr12:86691530..86691535,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr12:86691530..86691535, -
3.07e-86FFCP PHASE1:Mm9::chr9:42915185..42915192,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr9:42915185..42915192, -
3.07e-86FFCP PHASE1:Mm9::chr6:91441074..91441080,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr6:91441074..91441080, -
3.07e-86FFCP PHASE1:Mm9::chr17:35094068..35094092,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr17:35094068..35094092, -
3.07e-86FFCP PHASE2:Mm9::chr17:35093377..35093381,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr17:35093377..35093381, +
3.07e-86FFCP PHASE2:Mm9::chr2:129407463..129407468,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr2:129407463..129407468, -
3.07e-86FFCP PHASE1:Mm9::chr19:29573929..29573932,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr19:29573929..29573932, +
3.07e-86FFCP PHASE1:Mm9::chr12:85288471..85288502,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr12:85288471..85288502, +
3.07e-86FFCP PHASE1:Mm9::chr5:32912678..32912687,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr5:32912678..32912687, +
3.07e-86FFCP PHASE2:Mm9::chr4:141645056..141645068,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr4:141645056..141645068, +
3.07e-86FFCP PHASE1:Mm9::chr8:25530071..25530072,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr8:25530071..25530072, +
3.07e-86FFCP PHASE1:Mm9::chr4:100890388..100890423,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr4:100890388..100890423, +
3.07e-86FFCP PHASE1:Mm9::chr5:76329688..76329692,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr5:76329688..76329692, -
3.07e-86FFCP PHASE1:Mm9::chr13:113554186..113554192,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr13:113554186..113554192, +
3.07e-86FFCP PHASE1:Mm9::chr4:141645056..141645068,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr4:141645056..141645068, +
3.07e-86FFCP PHASE2:Mm9::chr3:90270007..90270012,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr3:90270007..90270012, +
3.07e-86FFCP PHASE1:Mm9::chr1:132405466..132405470,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr1:132405466..132405470, +
3.07e-86FFCP PHASE1:Mm9::chr14:101778294..101778296,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr14:101778294..101778296, +
3.07e-86FFCP PHASE1:Mm9::chr12:87046930..87046933,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr12:87046930..87046933, +
3.07e-86FFCP PHASE1:Mm9::chr1:163794592..163794593,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr1:163794592..163794593, +
3.07e-86FFCP PHASE1:Mm9::chr18:65159026..65159034,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr18:65159026..65159034, -
3.07e-86FFCP PHASE1:Mm9::chr7:117101788..117101793,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr7:117101788..117101793, +
3.07e-86FFCP PHASE1:Mm9::chr2:169549462..169549477,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr2:169549462..169549477, +
3.07e-86FFCP PHASE2:Mm9::chr1:186559285..186559288,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr1:186559285..186559288, +
3.07e-86FFCP PHASE2:Mm9::chr10:85585949..85585969,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr10:85585949..85585969, -
3.07e-86FFCP PHASE1:Mm9::chr8:114250006..114250039,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr8:114250006..114250039, -
3.07e-86FFCP PHASE1:Mm9::chr4:57687477..57687488,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr4:57687477..57687488, +
3.07e-86FFCP PHASE1:Mm9::chr15:97402708..97402712,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr15:97402708..97402712, +
3.07e-86FFCP PHASE1:Mm9::chr1:138241693..138241697,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr1:138241693..138241697, +
3.07e-86FFCP PHASE2:Mm9::chr1:66883923..66883955,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr1:66883923..66883955, -
3.07e-86FFCP PHASE1:Mm9::chr10:93895817..93895819,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr10:93895817..93895819, -
3.07e-86FFCP PHASE2:Mm9::chr13:100000226..100000230,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr13:100000226..100000230, +
3.07e-86FFCP PHASE1:Mm9::chr9:45920408..45920437,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr9:45920408..45920437, -
3.07e-86FFCP PHASE1:Mm9::chr2:133323630..133323631,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr17:35106749..35106752,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr17:35106749..35106752, -
3.07e-86FFCP PHASE1:Mm9::chr1:186559285..186559288,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr1:186559285..186559288, +
3.07e-86FFCP PHASE1:Mm9::chr11:109223779..109223789,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr11:109223779..109223789, -
3.07e-86FFCP PHASE1:Mm9::chr4:43407825..43407830,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr4:43407825..43407830, +
3.07e-86FFCP PHASE2:Mm9::chr16:85801525..85801529,-#_d8e39b4f3edc4301b0d316aab64dbb70p6@Adamts1
3.07e-86FFCP PHASE2:Mm9::chr9:42915220..42915225,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr9:42915220..42915225, -
3.07e-86FFCP PHASE2:Mm9::chr17:12388232..12388237,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr17:12388232..12388237, +
3.07e-86FFCP PHASE1:Mm9::chr17:34798597..34798606,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr17:34798597..34798606, +
3.07e-86FFCP PHASE1:Mm9::chr12:25364645..25364655,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr12:25364645..25364655, +
3.07e-86FFCP PHASE1:Mm9::chr11:68437375..68437378,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr11:68437375..68437378, +
3.07e-86FFCP PHASE2:Mm9::chr18:35881716..35881727,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr18:35881716..35881727, -
3.07e-86FFCP PHASE1:Mm9::chr6:34549876..34549892,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr6:34549876..34549892, -
3.07e-86FFCP PHASE2:Mm9::chr2:84756280..84756286,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr2:84756280..84756286, +
3.07e-86FFCP PHASE1:Mm9::chr18:38831400..38831402,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr18:38831400..38831402, -
3.07e-86FFCP PHASE1:Mm9::chr10:85587155..85587188,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr10:85587155..85587188, +
3.07e-86FFCP PHASE1:Mm9::chr13:113542610..113542614,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr13:113542610..113542614, +
3.07e-86FFCP PHASE2:Mm9::chr15:88669906..88669914,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr15:88669906..88669914, +
3.07e-86FFCP PHASE2:Mm9::chr15:59435855..59435878,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr15:59435855..59435878, -
3.07e-86FFCP PHASE2:Mm9::chr9:45920408..45920437,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr9:45920408..45920437, -
3.07e-86FFCP PHASE1:Mm9::chr11:117829935..117829959,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr11:117829935..117829959, -
3.07e-86FFCP PHASE2:Mm9::chr11:68437375..68437378,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr11:68437375..68437378, +
3.07e-86FFCP PHASE1:Mm9::chr8:89310639..89310641,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr8:89310639..89310641, -
3.07e-86FFCP PHASE1:Mm9::chr8:111108947..111108951,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr8:111108947..111108951, +
3.07e-86FFCP PHASE2:Mm9::chr11:109223779..109223789,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr11:109223779..109223789, -
3.07e-86FFCP PHASE2:Mm9::chr6:34549876..34549892,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr6:34549876..34549892, -
3.07e-86FFCP PHASE1:Mm9::chr18:44793802..44793835,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr18:44793802..44793835, +
3.07e-86FFCP PHASE2:Mm9::chr8:11183699..11183703,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr8:11183699..11183703, -
3.07e-86FFCP PHASE2:Mm9::chr12:86691575..86691580,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr12:86691575..86691580, -
3.07e-86FFCP PHASE2:Mm9::chr11:88890706..88890745,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr11:88890706..88890745, +
3.07e-86FFCP PHASE1:Mm9::chr9:42915220..42915225,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr9:42915220..42915225, -
3.07e-86FFCP PHASE1:Mm9::chr6:92938260..92938264,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr6:92938260..92938264, -
3.07e-86FFCP PHASE2:Mm9::chrX:166418658..166418683,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chrX:166418658..166418683, +
3.07e-86FFCP PHASE2:Mm9::chr18:39513150..39513152,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr18:39513150..39513152, +
3.07e-86FFCP PHASE2:Mm9::chr15:32178407..32178408,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr15:32178407..32178408, -
3.07e-86FFCP PHASE1:Mm9::chr9:62199266..62199267,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr9:62199266..62199267, +
3.07e-86FFCP PHASE2:Mm9::chr17:48822294..48822295,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr17:48822294..48822295, -
3.07e-86FFCP PHASE2:Mm9::chr17:28107053..28107062,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr17:28107053..28107062, -
3.07e-86FFCP PHASE1:Mm9::chr13:5840965..5840966,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr13:5840965..5840966, +
3.07e-86FFCP PHASE2:Mm9::chr2:133323630..133323631,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr5:33088768..33088773,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr5:33088768..33088773, +
3.07e-86FFCP PHASE1:Mm9::chr2:84756280..84756286,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr2:84756280..84756286, +
3.07e-86FFCP PHASE2:Mm9::chr8:3311867..3311873,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr8:3311867..3311873, +
3.07e-86FFCP PHASE1:Mm9::chr1:173044327..173044331,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr1:173044327..173044331, +
3.07e-86FFCP PHASE1:Mm9::chr14:8928284..8928331,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr14:8928284..8928331, +
3.07e-86FFCP PHASE2:Mm9::chr6:48398664..48398684,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr6:48398664..48398684, -
3.07e-86FFCP PHASE1:Mm9::chr11:118287827..118287833,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr11:118287827..118287833, -
3.07e-86FFCP PHASE1:Mm9::chr4:86335502..86335509,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr4:86335502..86335509, +
3.07e-86FFCP PHASE1:Mm9::chr10:8471698..8471701,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr10:8471698..8471701, +
3.07e-86FFCP PHASE2:Mm9::chr4:43407825..43407830,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr4:43407825..43407830, +
3.07e-86FFCP PHASE2:Mm9::chr18:4336287..4336296,-#_d8e39b4f3edc4301b0d316aab64dbb70p8@Map3k8
3.07e-86FFCP PHASE2:Mm9::chr18:47491114..47491123,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr18:47491114..47491123, +
3.07e-86FFCP PHASE1:Mm9::chr10:93942324..93942342,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr10:93942324..93942342, -
3.07e-86FFCP PHASE2:Mm9::chr17:35096519..35096524,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr17:35096519..35096524, +
3.07e-86FFCP PHASE2:Mm9::chr8:86713876..86713879,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr8:86713876..86713879, +
3.07e-86FFCP PHASE1:Mm9::chr15:32178407..32178408,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr15:32178407..32178408, -
3.07e-86FFCP PHASE1:Mm9::chr12:86691503..86691504,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr12:86691503..86691504, -
3.07e-86FFCP PHASE2:Mm9::chr15:82207617..82207621,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr15:82207617..82207621, +
3.07e-86FFCP PHASE1:Mm9::chr2:11935531..11935538,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr2:11935531..11935538, -
3.07e-86FFCP PHASE1:Mm9::chr17:35093377..35093381,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr17:35093377..35093381, +
3.07e-86FFCP PHASE2:Mm9::chr13:5840965..5840966,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr13:5840965..5840966, +
3.07e-86FFCP PHASE2:Mm9::chr13:113554186..113554192,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr13:113554186..113554192, +
3.07e-86FFCP PHASE1:Mm9::chr17:24807620..24807650,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr17:24807620..24807650, -
3.07e-86FFCP PHASE1:Mm9::chr15:82193340..82193343,+#_d8e39b4f3edc4301b0d316aab64dbb70p@chr15:82193340..82193343, +
3.07e-86FFCP PHASE1:Mm9::chr18:39297570..39297573,-#_d8e39b4f3edc4301b0d316aab64dbb70p@chr18:39297570..39297573, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003835&oldid=3277588"