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{{UBERON
{{UBERON
|id=UBERON:0004175
|alt_id=
|name=internal reproductive organ
|namespace=
|def="The internal genitalia are the internal sex organs such as the uterine tube, the uterus and the vagina in female mammals, and the testis, seminal vesicle, ejaculatory duct and prostate in male mammals" [GO:0035260]
|xref=FMA:45652
|is_a=UBERON:0003133
|synonym="internal genitalia" EXACT [];;"internal reproductive organ" EXACT [];;"internal sex organ" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The internal genitalia are the internal sex organs such as the uterine tube, the uterus and the vagina in female mammals, and the testis, seminal vesicle, ejaculatory duct and prostate in male mammals" [GO:0035260]
|subset=organ_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004175
|is_a=UBERON:0003133
|is_obsolete=
|located_in=
|located_in=
|name=internal genitalia
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=organ_slim
|preceded_by=
|synonym="internal genitalia" EXACT [];;"internal reproductive organ" EXACT [];;"internal sex organ" EXACT []
|union_of=
|xref=FMA:45652
}}
}}

Latest revision as of 17:44, 12 September 2014

Name:internal genitalia
Namespace:FANTOM
Definition:"The internal genitalia are the internal sex organs such as the uterine tube, the uterus and the vagina in female mammals, and the testis, seminal vesicle, ejaculatory duct and prostate in male mammals" [GO:0035260]
Xrefs:
links:
FMA:45652
Synonyms: "internal genitalia" EXACT []
"internal reproductive organ" EXACT []
"internal sex organ" EXACT []
Subset: organ_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003133(reproductive organ)



Children

is a:UBERON:0003975 (internal female genitalia),UBERON:0004054 (internal male genitalia)
part of:UBERON:0000995 (uterus)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004175 (internal genitalia), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.36e-40FFCP PHASE1:Hg19::chr6:8436206..8436217,-#_e44249ac3ec06168788e9efa8c1ae5a3p7@SLC35B3
6.36e-40FFCP PHASE2:Hg19::chr6:8436206..8436217,-#_e44249ac3ec06168788e9efa8c1ae5a3p7@SLC35B3
3.75e-39FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_9252825bbd66bf215db030426bc1aff1p@chr2:69981027..69981032, +
3.75e-39FFCP PHASE1:Mm9::chr2:35288301..35288317,-#_9252825bbd66bf215db030426bc1aff1p11@Ggta1
3.75e-39FFCP PHASE2:Mm9::chr1:11079738..11079750,+#_9252825bbd66bf215db030426bc1aff1p@chr1:11079738..11079750, +
3.75e-39FFCP PHASE2:Mm9::chr2:35288301..35288317,-#_9252825bbd66bf215db030426bc1aff1p11@Ggta1
3.75e-39FFCP PHASE1:Mm9::chr2:35288421..35288430,-#_9252825bbd66bf215db030426bc1aff1p17@Ggta1
3.75e-39FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_9252825bbd66bf215db030426bc1aff1p@chr2:69981027..69981032, +
3.75e-39FFCP PHASE2:Mm9::chr3:131159868..131159874,+#_9252825bbd66bf215db030426bc1aff1p@chr3:131159868..131159874, +
3.75e-39FFCP PHASE2:Mm9::chr2:35288421..35288430,-#_9252825bbd66bf215db030426bc1aff1p17@Ggta1
3.75e-39FFCP PHASE1:Mm9::chr3:131159868..131159874,+#_9252825bbd66bf215db030426bc1aff1p@chr3:131159868..131159874, +
3.75e-39FFCP PHASE1:Mm9::chr1:11079738..11079750,+#_9252825bbd66bf215db030426bc1aff1p@chr1:11079738..11079750, +
1.08e-38FFCP PHASE1:Hg19::chr22:44708774..44708788,-#_b8d739fde63a42fc224b69dcbeb2105fp3@KIAA1644
1.08e-38FFCP PHASE2:Hg19::chr22:44708774..44708788,-#_b8d739fde63a42fc224b69dcbeb2105fp3@KIAA1644
3.77e-36FFCP PHASE2:Mm9::chr10:5636336..5636347,-#_0aa7e769271c04fc8bedf8fb630e6657p9@Esr1
3.77e-36FFCP PHASE1:Mm9::chr10:5636336..5636347,-#_0aa7e769271c04fc8bedf8fb630e6657p9@Esr1
2.89e-35FFCP PHASE2:Mm9::chr4:98365828..98365839,-#_eab7e986bbc138c63fb9521e4f8a07c4p@chr4:98365828..98365839, -
2.89e-35FFCP PHASE1:Mm9::chr4:98365828..98365839,-#_eab7e986bbc138c63fb9521e4f8a07c4p@chr4:98365828..98365839, -
1.33e-31FFCP PHASE1:Mm9::chr2:35288345..35288356,-#_72ecef95e998d16ce28864b3cc50dc77p14@Ggta1
1.33e-31FFCP PHASE2:Mm9::chr2:35288345..35288356,-#_72ecef95e998d16ce28864b3cc50dc77p14@Ggta1
1.48e-31FFCP PHASE2:Hg19::chr22:44708735..44708746,-#_ed1c8539b5fa613c8e8356e5eaa008f5p2@KIAA1644
1.48e-31FFCP PHASE1:Hg19::chr22:44708735..44708746,-#_ed1c8539b5fa613c8e8356e5eaa008f5p2@KIAA1644
1.17e-30FFCP PHASE1:Mm9::chr4:35105498..35105509,-#_959ff9e5b765276f1bd4c41300c3ce73p@chr4:35105498..35105509, -
1.17e-30FFCP PHASE2:Mm9::chr4:35105498..35105509,-#_959ff9e5b765276f1bd4c41300c3ce73p@chr4:35105498..35105509, -
1.17e-30FFCP PHASE1:Mm9::chr2:20261055..20261071,-#_959ff9e5b765276f1bd4c41300c3ce73p@chr2:20261055..20261071, -
1.17e-30FFCP PHASE2:Mm9::chr2:20261055..20261071,-#_959ff9e5b765276f1bd4c41300c3ce73p@chr2:20261055..20261071, -
2.36e-30FFCP PHASE1:Mm9::chr19:21245439..21245446,-#_11450aa412f2e438bce96bd8eee3745bp3@uc008gyt.1
2.36e-30FFCP PHASE2:Mm9::chr19:21245439..21245446,-#_11450aa412f2e438bce96bd8eee3745bp3@uc008gyt.1
8.84e-30FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr14:63585028..63585037, -
8.84e-30FFCP PHASE1:Mm9::chr2:124475078..124475084,+#_becc3e86b7d1fcd43ece1ca18be81989p@chr2:124475078..124475084, +
8.84e-30FFCP PHASE1:Mm9::chr2:131681357..131681366,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr2:131681357..131681366, -
8.84e-30FFCP PHASE2:Mm9::chr4:140462693..140462700,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr4:140462693..140462700, -
8.84e-30FFCP PHASE1:Mm9::chr16:92596391..92596400,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr16:92596391..92596400, -
8.84e-30FFCP PHASE1:Mm9::chr1:11079819..11079834,+#_becc3e86b7d1fcd43ece1ca18be81989p@chr1:11079819..11079834, +
8.84e-30FFCP PHASE2:Mm9::chr2:131681543..131681554,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr2:131681543..131681554, -
8.84e-30FFCP PHASE1:Mm9::chr10:21130385..21130393,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr10:21130385..21130393, -
8.84e-30FFCP PHASE2:Mm9::chr12:8339007..8339020,+#_becc3e86b7d1fcd43ece1ca18be81989p@chr12:8339007..8339020, +
8.84e-30FFCP PHASE1:Mm9::chr9:40297346..40297350,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr9:40297346..40297350, -
8.84e-30FFCP PHASE2:Mm9::chr9:40297346..40297350,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr9:40297346..40297350, -
8.84e-30FFCP PHASE1:Mm9::chr8:26316320..26316331,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr8:26316320..26316331, -
8.84e-30FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_becc3e86b7d1fcd43ece1ca18be81989p@chr10:127470655..127470664, +
8.84e-30FFCP PHASE1:Mm9::chr2:131685562..131685563,-#_becc3e86b7d1fcd43ece1ca18be81989p2@Erv3
8.84e-30FFCP PHASE1:Mm9::chr13:27434787..27434799,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr13:27434787..27434799, -
8.84e-30FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_becc3e86b7d1fcd43ece1ca18be81989p4@Spink12
8.84e-30FFCP PHASE1:Mm9::chr7:150952911..150952917,-#_becc3e86b7d1fcd43ece1ca18be81989p3@Mrgprg
8.84e-30FFCP PHASE1:Mm9::chr2:131681543..131681554,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr2:131681543..131681554, -
8.84e-30FFCP PHASE2:Mm9::chr2:166407469..166407519,-#_becc3e86b7d1fcd43ece1ca18be81989p4@Prex1
8.84e-30FFCP PHASE2:Mm9::chr6:121306916..121306921,+#_becc3e86b7d1fcd43ece1ca18be81989p12@Slc6a12
8.84e-30FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr14:63585028..63585037, -
8.84e-30FFCP PHASE2:Mm9::chr6:97777247..97777258,+#_becc3e86b7d1fcd43ece1ca18be81989p@chr6:97777247..97777258, +
8.84e-30FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_becc3e86b7d1fcd43ece1ca18be81989p4@Spink12
8.84e-30FFCP PHASE2:Mm9::chr12:8339024..8339034,+#_becc3e86b7d1fcd43ece1ca18be81989p@chr12:8339024..8339034, +
8.84e-30FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_becc3e86b7d1fcd43ece1ca18be81989p4@Defb42
8.84e-30FFCP PHASE2:Mm9::chr2:131680870..131680891,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr2:131680870..131680891, -
8.84e-30FFCP PHASE1:Mm9::chr16:20316875..20316878,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr16:20316875..20316878, -
8.84e-30FFCP PHASE2:Mm9::chr2:169512387..169512392,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr2:169512387..169512392, -
8.84e-30FFCP PHASE2:Mm9::chr10:115614018..115614024,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr10:115614018..115614024, -
8.84e-30FFCP PHASE2:Mm9::chr7:109630203..109630210,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr7:109630203..109630210, -
8.84e-30FFCP PHASE1:Mm9::chr14:56857569..56857584,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr14:56857569..56857584, -
8.84e-30FFCP PHASE2:Mm9::chr13:61036161..61036172,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr13:61036161..61036172, -
8.84e-30FFCP PHASE2:Mm9::chr2:124475078..124475084,+#_becc3e86b7d1fcd43ece1ca18be81989p@chr2:124475078..124475084, +
8.84e-30FFCP PHASE1:Mm9::chr6:48855132..48855142,+#_becc3e86b7d1fcd43ece1ca18be81989p11@Abp1
8.84e-30FFCP PHASE2:Mm9::chr1:11079819..11079834,+#_becc3e86b7d1fcd43ece1ca18be81989p@chr1:11079819..11079834, +
8.84e-30FFCP PHASE2:Mm9::chr8:26316320..26316331,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr8:26316320..26316331, -
8.84e-30FFCP PHASE1:Mm9::chr6:121306890..121306895,+#_becc3e86b7d1fcd43ece1ca18be81989p11@Slc6a12
8.84e-30FFCP PHASE2:Mm9::chr9:40297262..40297271,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr9:40297262..40297271, -
8.84e-30FFCP PHASE1:Mm9::chr14:14765101..14765107,+#_becc3e86b7d1fcd43ece1ca18be81989p1@ENSMUST00000159275, p1@uc007sgd.1
8.84e-30FFCP PHASE1:Mm9::chr11:46564064..46564079,+#_becc3e86b7d1fcd43ece1ca18be81989p2@Havcr1
8.84e-30FFCP PHASE1:Mm9::chr17:29601992..29602002,+#_becc3e86b7d1fcd43ece1ca18be81989p@chr17:29601992..29602002, +
8.84e-30FFCP PHASE1:Mm9::chr9:40297262..40297271,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr9:40297262..40297271, -
8.84e-30FFCP PHASE1:Mm9::chr10:115614018..115614024,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr10:115614018..115614024, -
8.84e-30FFCP PHASE2:Mm9::chr5:112904886..112904895,-#_becc3e86b7d1fcd43ece1ca18be81989p6@Sez6l
8.84e-30FFCP PHASE2:Mm9::chr7:150952861..150952867,-#_becc3e86b7d1fcd43ece1ca18be81989p4@Mrgprg
8.84e-30FFCP PHASE2:Mm9::chr2:131681104..131681114,+#_becc3e86b7d1fcd43ece1ca18be81989p@chr2:131681104..131681114, +
8.84e-30FFCP PHASE1:Mm9::chr7:129057811..129057817,+#_becc3e86b7d1fcd43ece1ca18be81989p@chr7:129057811..129057817, +
8.84e-30FFCP PHASE2:Mm9::chr10:21130385..21130393,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr10:21130385..21130393, -
8.84e-30FFCP PHASE2:Mm9::chr10:115614273..115614299,+#_becc3e86b7d1fcd43ece1ca18be81989p17@Ptprr
8.84e-30FFCP PHASE2:Mm9::chr11:46564064..46564079,+#_becc3e86b7d1fcd43ece1ca18be81989p2@Havcr1
8.84e-30FFCP PHASE1:Mm9::chr13:27437553..27437554,+#_becc3e86b7d1fcd43ece1ca18be81989p3@Prl8a2
8.84e-30FFCP PHASE2:Mm9::chr13:61036176..61036186,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr13:61036176..61036186, -
8.84e-30FFCP PHASE1:Mm9::chr6:97777247..97777258,+#_becc3e86b7d1fcd43ece1ca18be81989p@chr6:97777247..97777258, +
8.84e-30FFCP PHASE2:Mm9::chr13:27437553..27437554,+#_becc3e86b7d1fcd43ece1ca18be81989p3@Prl8a2
8.84e-30FFCP PHASE2:Mm9::chr6:48855132..48855142,+#_becc3e86b7d1fcd43ece1ca18be81989p11@Abp1
8.84e-30FFCP PHASE1:Mm9::chr2:166407469..166407519,-#_becc3e86b7d1fcd43ece1ca18be81989p4@Prex1
8.84e-30FFCP PHASE2:Mm9::chr6:121306890..121306895,+#_becc3e86b7d1fcd43ece1ca18be81989p11@Slc6a12
8.84e-30FFCP PHASE1:Mm9::chrX:51027816..51027821,+#_becc3e86b7d1fcd43ece1ca18be81989p2@4930502E18Rik
8.84e-30FFCP PHASE1:Mm9::chr13:61036161..61036172,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr13:61036161..61036172, -
8.84e-30FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_becc3e86b7d1fcd43ece1ca18be81989p@chr10:127470655..127470664, +
8.84e-30FFCP PHASE1:Mm9::chr11:71330017..71330043,+#_becc3e86b7d1fcd43ece1ca18be81989p1@ENSMUST00000151841
8.84e-30FFCP PHASE1:Mm9::chr9:40297312..40297323,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr9:40297312..40297323, -
8.84e-30FFCP PHASE1:Mm9::chr5:112904886..112904895,-#_becc3e86b7d1fcd43ece1ca18be81989p6@Sez6l
8.84e-30FFCP PHASE2:Mm9::chr9:40297312..40297323,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr9:40297312..40297323, -
8.84e-30FFCP PHASE1:Mm9::chr2:131680870..131680891,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr2:131680870..131680891, -
8.84e-30FFCP PHASE1:Mm9::chr10:115614273..115614299,+#_becc3e86b7d1fcd43ece1ca18be81989p17@Ptprr
8.84e-30FFCP PHASE1:Mm9::chr7:109630203..109630210,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr7:109630203..109630210, -
8.84e-30FFCP PHASE2:Mm9::chr5:112905373..112905419,+#_becc3e86b7d1fcd43ece1ca18be81989p@chr5:112905373..112905419, +
8.84e-30FFCP PHASE2:Mm9::chr7:150952890..150952901,-#_becc3e86b7d1fcd43ece1ca18be81989p2@Mrgprg
8.84e-30FFCP PHASE1:Mm9::chr12:8339007..8339020,+#_becc3e86b7d1fcd43ece1ca18be81989p@chr12:8339007..8339020, +
8.84e-30FFCP PHASE1:Mm9::chr7:150952861..150952867,-#_becc3e86b7d1fcd43ece1ca18be81989p4@Mrgprg
8.84e-30FFCP PHASE1:Mm9::chr18:46301228..46301253,-#_becc3e86b7d1fcd43ece1ca18be81989p@chr18:46301228..46301253, -

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