UBERON:0004786: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0004786
|name=gastrointestinal system mucosa
|namespace=
|def=
|xref=BTO:0000546;;MA:0001521;;SCTID:410433007
|is_a=UBERON:0000344;;UBERON:0004119
|...") |
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=The gut mucosa of amphioxus has insulin-secreting cells. PMID:16417468 | |comment=The gut mucosa of amphioxus has insulin-secreting cells. PMID:16417468 | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004786 | |||
|is_a=UBERON:0000344 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of=UBERON:0001555;;UBERON:0005409 | |name=gastrointestinal system mucosa | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0005409;;UBERON:0001555;;UBERON:0005409 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset= | |||
|synonym="digestive tract mucosa" EXACT [UBERON:cjm];;"gut mucosa" EXACT [BTO:0000546];;"gut mucuous membrane" EXACT [UBERON:cjm];;"mucosa of gut" EXACT [UBERON:cjm] | |||
|union_of= | |||
|xref=BTO:0000546;;MA:0001521;;SCTID:410433007 | |||
}} | }} | ||
Latest revision as of 17:48, 12 September 2014
| Name: | gastrointestinal system mucosa | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Xrefs: |
| ||
| Synonyms: |
"digestive tract mucosa" EXACT [UBERON:cjm] "gut mucosa" EXACT [BTO:0000546] "gut mucuous membrane" EXACT [UBERON:cjm] "mucosa of gut" EXACT [UBERON:cjm] | ||
| Comments: | The gut mucosa of amphioxus has insulin-secreting cells. PMID:16417468 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000344(mucosa) |
|---|---|
| part_of: | UBERON:0005409(gastrointestinal system),UBERON:0001555(digestive tract),UBERON:0005409(gastrointestinal system) |
Children
| is a: | UBERON:0001242 (intestinal mucosa) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
- 10255-104C3
- 10256-104C4
- 10257-104C5
- 10258-104C6
- 10259-104C7
- 10260-104C8 (Ileum epithelium, treated with RANKL, day03, pool3)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
... further results Mouse (Mus musculus)
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
- 10255-104C3
- 10256-104C4
- 10257-104C5
- 10258-104C6
- 10259-104C7
- 10260-104C8 (Ileum epithelium, treated with RANKL, day03, pool3)
- 10420-106C6 (colon carcinoma cell line:COLO-320)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004786 (gastrointestinal system mucosa), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:35801527..35801540,+#_d3798c87aa430c71cc32e9f5b6901c77 | p@chr9:35801527..35801540, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:35801527..35801540,+#_d3798c87aa430c71cc32e9f5b6901c77 | p@chr9:35801527..35801540, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr2:127873614..127873626,+#_d4e83fb1a4c70408d6d20d6269eb033b | p@chr2:127873614..127873626, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr1:111023361..111023366,+#_d4e83fb1a4c70408d6d20d6269eb033b | p1@CYMP |
| 2.4e-66 | FFCP PHASE2:Hg19::chr2:127873614..127873626,+#_d4e83fb1a4c70408d6d20d6269eb033b | p@chr2:127873614..127873626, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr1:111023361..111023366,+#_d4e83fb1a4c70408d6d20d6269eb033b | p1@CYMP |
| 2.4e-66 | FFCP PHASE1:Hg19::chr18:7034928..7034943,-#_d4e83fb1a4c70408d6d20d6269eb033b | p@chr18:7034928..7034943, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr6:22919616..22919625,-#_d4e83fb1a4c70408d6d20d6269eb033b | p@chr6:22919616..22919625, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr13:46093155..46093164,+#_d4e83fb1a4c70408d6d20d6269eb033b | p@chr13:46093155..46093164, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr18:7034928..7034943,-#_d4e83fb1a4c70408d6d20d6269eb033b | p@chr18:7034928..7034943, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr9:129830560..129830568,+#_d4e83fb1a4c70408d6d20d6269eb033b | p@chr9:129830560..129830568, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr13:46093155..46093164,+#_d4e83fb1a4c70408d6d20d6269eb033b | p@chr13:46093155..46093164, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr7:117329764..117329777,+#_d4e83fb1a4c70408d6d20d6269eb033b | p1@ENST00000429014 |
| 2.4e-66 | FFCP PHASE1:Hg19::chr6:22919616..22919625,-#_d4e83fb1a4c70408d6d20d6269eb033b | p@chr6:22919616..22919625, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr9:129830560..129830568,+#_d4e83fb1a4c70408d6d20d6269eb033b | p@chr9:129830560..129830568, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr7:117329764..117329777,+#_d4e83fb1a4c70408d6d20d6269eb033b | p1@ENST00000429014 |
| 3.35e-66 | FFCP PHASE2:Hg19::chrX:21849506..21849512,-#_b6ee81e0032eb8449f53c30cc2ef872f | p@chrX:21849506..21849512, - |
| 3.35e-66 | FFCP PHASE2:Hg19::chr2:205409703..205409714,+#_b6ee81e0032eb8449f53c30cc2ef872f | p@chr2:205409703..205409714, + |
| 3.35e-66 | FFCP PHASE1:Hg19::chr2:205409703..205409714,+#_b6ee81e0032eb8449f53c30cc2ef872f | p@chr2:205409703..205409714, + |
| 3.35e-66 | FFCP PHASE2:Hg19::chr1:6420713..6420725,-#_b6ee81e0032eb8449f53c30cc2ef872f | p16@ACOT7 |
| 3.35e-66 | FFCP PHASE1:Hg19::chr1:6420713..6420725,-#_b6ee81e0032eb8449f53c30cc2ef872f | p16@ACOT7 |
| 3.35e-66 | FFCP PHASE1:Hg19::chrX:21849506..21849512,-#_b6ee81e0032eb8449f53c30cc2ef872f | p@chrX:21849506..21849512, - |
| 3.35e-66 | FFCP PHASE2:Hg19::chr20:17691468..17691474,-#_b6ee81e0032eb8449f53c30cc2ef872f | p@chr20:17691468..17691474, - |
| 3.35e-66 | FFCP PHASE1:Hg19::chr20:17691468..17691474,-#_b6ee81e0032eb8449f53c30cc2ef872f | p@chr20:17691468..17691474, - |
| 4.67e-66 | FFCP PHASE1:Hg19::chr11:89925073..89925074,+#_ac0a4f9452cfb3c1803a14000db6d1ff | p@chr11:89925073..89925074, + |
| 4.67e-66 | FFCP PHASE2:Hg19::chr9:138591077..138591111,-#_ac0a4f9452cfb3c1803a14000db6d1ff | p@chr9:138591077..138591111, - |
| 4.67e-66 | FFCP PHASE2:Hg19::chr11:89925073..89925074,+#_ac0a4f9452cfb3c1803a14000db6d1ff | p@chr11:89925073..89925074, + |
| 4.67e-66 | FFCP PHASE2:Hg19::chr2:28340361..28340371,+#_ac0a4f9452cfb3c1803a14000db6d1ff | p@chr2:28340361..28340371, + |
| 4.67e-66 | FFCP PHASE1:Hg19::chr2:28340361..28340371,+#_ac0a4f9452cfb3c1803a14000db6d1ff | p@chr2:28340361..28340371, + |
| 4.67e-66 | FFCP PHASE1:Hg19::chr9:138591077..138591111,-#_ac0a4f9452cfb3c1803a14000db6d1ff | p@chr9:138591077..138591111, - |
| 3.83e-60 | FFCP PHASE1:Mm9::chr16:30055801..30055806,+#_919ba689f5e240f0c2ddc60d67c99aad | p@chr16:30055801..30055806, + |
| 3.83e-60 | FFCP PHASE2:Mm9::chr16:30055801..30055806,+#_919ba689f5e240f0c2ddc60d67c99aad | p@chr16:30055801..30055806, + |
| 3.16e-55 | FFCP PHASE2:Mm9::chr3:122215917..122215967,-#_2f6120dbc236728ea09cb51563b77b07 | p@chr3:122215917..122215967, - |
| 3.16e-55 | FFCP PHASE1:Mm9::chr3:122215917..122215967,-#_2f6120dbc236728ea09cb51563b77b07 | p@chr3:122215917..122215967, - |
| 1.47e-53 | FFCP PHASE1:Mm9::chr18:75457242..75457248,+#_fba70f1a1bf89bb0996f32177c617dc0 | p@chr18:75457242..75457248, + |
| 1.47e-53 | FFCP PHASE2:Mm9::chr18:75457242..75457248,+#_fba70f1a1bf89bb0996f32177c617dc0 | p@chr18:75457242..75457248, + |
| 1.5e-53 | FFCP PHASE1:Mm9::chr5:135442349..135442362,-#_9e74221994d0efad15636b62102bb0ee | p@chr5:135442349..135442362, - |
| 1.5e-53 | FFCP PHASE2:Mm9::chr5:135442349..135442362,-#_9e74221994d0efad15636b62102bb0ee | p@chr5:135442349..135442362, - |
| 1.94e-53 | FFCP PHASE1:Mm9::chr8:122335239..122335244,+#_17c32769b5e48649899063284ae10590 | p@chr8:122335239..122335244, + |
| 1.94e-53 | FFCP PHASE2:Mm9::chr8:122335239..122335244,+#_17c32769b5e48649899063284ae10590 | p@chr8:122335239..122335244, + |
| 7.2e-52 | FFCP PHASE2:Mm9::chr18:61795043..61795050,-#_3a1bfb3fb118ed8549610a97a9a0ef58 | p@chr18:61795043..61795050, - |
| 7.2e-52 | FFCP PHASE1:Mm9::chr18:61795043..61795050,-#_3a1bfb3fb118ed8549610a97a9a0ef58 | p@chr18:61795043..61795050, - |
| 1.66e-51 | FFCP PHASE2:Mm9::chr7:4101973..4101978,-#_d0a43ef7823338650b2e1fbde578b6fc | p4@Leng9 |
| 1.66e-51 | FFCP PHASE1:Mm9::chr7:4101973..4101978,-#_d0a43ef7823338650b2e1fbde578b6fc | p4@Leng9 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr14:22850283..22850310,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr14:22850283..22850310, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr9:98505341..98505348,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr9:98505341..98505348, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:24797832..24797838,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr3:24797832..24797838, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:107667666..107667673,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr8:107667666..107667673, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:128418747..128418756,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr8:128418747..128418756, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:127568784..127568794,+#_6ce11ad944ef09dc2085b91800f3a0ac | p6@ENST00000524320 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr4:157174324..157174332,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr4:157174324..157174332, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:163302780..163302789,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr2:163302780..163302789, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:87232406..87232409,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr7:87232406..87232409, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:148165064..148165071,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr3:148165064..148165071, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:372660..372670,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr6:372660..372670, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:32790683..32790693,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr13:32790683..32790693, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:127438794..127438800,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr8:127438794..127438800, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:91774965..91774974,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr6:91774965..91774974, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:128415915..128415922,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr8:128415915..128415922, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:55404829..55404833,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr1:55404829..55404833, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr15:45950558..45950561,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr15:45950558..45950561, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr5:71987749..71987774,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr5:71987749..71987774, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:66794389..66794398,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr2:66794389..66794398, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:141499716..141499722,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr7:141499716..141499722, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr9:125898916..125898941,-#_6ce11ad944ef09dc2085b91800f3a0ac | p14@STRBP |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:198324742..198324745,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr1:198324742..198324745, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr10:2328652..2328660,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr10:2328652..2328660, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:5491081..5491106,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr6:5491081..5491106, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr21:37143915..37143924,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr21:37143915..37143924, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:43616324..43616335,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr2:43616324..43616335, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr4:157174324..157174332,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr4:157174324..157174332, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr16:19661585..19661596,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr16:19661585..19661596, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr9:104610923..104610939,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr9:104610923..104610939, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr5:97747048..97747059,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr5:97747048..97747059, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr14:22850283..22850310,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr14:22850283..22850310, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:66354424..66354472,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr3:66354424..66354472, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:32790683..32790693,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr13:32790683..32790693, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:66794389..66794398,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr2:66794389..66794398, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr4:169559850..169559856,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr4:169559850..169559856, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:97958802..97958804,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr7:97958802..97958804, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:198324742..198324745,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr1:198324742..198324745, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:55404829..55404833,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr1:55404829..55404833, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:148165064..148165071,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr3:148165064..148165071, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr4:157174023..157174034,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr4:157174023..157174034, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr16:19661585..19661596,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr16:19661585..19661596, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:128418828..128418839,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr8:128418828..128418839, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:140054665..140054678,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr3:140054665..140054678, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr12:65466889..65466894,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr12:65466889..65466894, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:8389389..8389429,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr6:8389389..8389429, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:127817393..127817400,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr8:127817393..127817400, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:8446968..8446983,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr6:8446968..8446983, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:43616324..43616335,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr2:43616324..43616335, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:128118744..128118753,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr8:128118744..128118753, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:137749883..137749887,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr7:137749883..137749887, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chrX:42162203..42162241,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chrX:42162203..42162241, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:66354424..66354472,+#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr3:66354424..66354472, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr4:169559850..169559856,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr4:169559850..169559856, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:87232440..87232448,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr7:87232440..87232448, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:163302793..163302800,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr2:163302793..163302800, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr21:37143915..37143924,-#_6ce11ad944ef09dc2085b91800f3a0ac | p@chr21:37143915..37143924, - |
