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{{UBERON
{{UBERON
|id=UBERON:0004810
|alt_id=
|name=nephron tubule epithelium
|namespace=
|def="An epithelium that is part of a nephron tubule [Obol]." [OBOL:automatic]
|xref=MA:0001681;;ncithesaurus:Renal_Tubule_Epithelium
|is_a=UBERON:0004211
|synonym="epithelial tissue of nephron tubule" EXACT [OBOL:automatic];;"epithelial tissue of renal tubule" EXACT [OBOL:automatic];;"epithelial tissue of tubulus renalis" EXACT [OBOL:automatic];;"epithelium of nephron tubule" EXACT [OBOL:automatic];;"epithelium of renal tubule" EXACT [OBOL:automatic];;"epithelium of tubulus renalis" EXACT [OBOL:automatic];;"nephron tubule epithelial tissue" EXACT [OBOL:automatic];;"nephron tubule epithelium" EXACT [OBOL:automatic];;"renal tubule epithelial tissue" EXACT [OBOL:automatic];;"tubulus renalis epithelial tissue" EXACT [OBOL:automatic];;"tubulus renalis epithelium" EXACT [OBOL:automatic]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An epithelium that is part of a nephron tubule [Obol]." [OBOL:automatic]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004810
|is_a=UBERON:0004211
|is_obsolete=
|located_in=
|located_in=
|name=nephron tubule epithelium
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001231
|part_of=UBERON:0001231
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="epithelial tissue of nephron tubule" EXACT [OBOL:automatic];;"epithelial tissue of renal tubule" EXACT [OBOL:automatic];;"epithelial tissue of tubulus renalis" EXACT [OBOL:automatic];;"epithelium of nephron tubule" EXACT [OBOL:automatic];;"epithelium of renal tubule" EXACT [OBOL:automatic];;"epithelium of tubulus renalis" EXACT [OBOL:automatic];;"nephron tubule epithelial tissue" EXACT [OBOL:automatic];;"nephron tubule epithelium" EXACT [OBOL:automatic];;"renal tubule epithelial tissue" EXACT [OBOL:automatic];;"tubulus renalis epithelial tissue" EXACT [OBOL:automatic];;"tubulus renalis epithelium" EXACT [OBOL:automatic]
|union_of=
|xref=MA:0001681;;ncithesaurus:Renal_Tubule_Epithelium
}}
}}

Latest revision as of 17:48, 12 September 2014

Name:nephron tubule epithelium
Namespace:FANTOM
Definition:"An epithelium that is part of a nephron tubule [Obol]." [OBOL:automatic]
Xrefs:
links:

MA:0001681

ncithesaurus:Renal_Tubule_Epithelium
Synonyms: "epithelial tissue of nephron tubule" EXACT [OBOL:automatic]
"epithelial tissue of renal tubule" EXACT [OBOL:automatic]
"epithelial tissue of tubulus renalis" EXACT [OBOL:automatic]
"epithelium of nephron tubule" EXACT [OBOL:automatic]
"epithelium of renal tubule" EXACT [OBOL:automatic]
"epithelium of tubulus renalis" EXACT [OBOL:automatic]
"nephron tubule epithelial tissue" EXACT [OBOL:automatic]
"nephron tubule epithelium" EXACT [OBOL:automatic]
"renal tubule epithelial tissue" EXACT [OBOL:automatic]
"tubulus renalis epithelial tissue" EXACT [OBOL:automatic]
"tubulus renalis epithelium" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004211(nephron epithelium)
part_of:UBERON:0001231(nephron tubule)



Children

is a:UBERON:0007685 (region of nephron tubule)
part of:CL:1000494 (nephron tubule epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004810 (nephron tubule epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.6e-125FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_661ae4b5e7d9de4463bf261f705e6aa3p4@MEGF11
3.6e-125FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_661ae4b5e7d9de4463bf261f705e6aa3p4@MEGF11
4.27e-99FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_8b266201f1c7ab01fb5dbbcea59ae589p@chr1:1100457..1100470, +
4.27e-99FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_8b266201f1c7ab01fb5dbbcea59ae589p@chr1:1100457..1100470, +
6.34e-89FFCP PHASE1:Hg19::chr2:693380..693398,+#_659b7fab47e5e016c442289e52614903p@chr2:693380..693398, +
6.34e-89FFCP PHASE2:Hg19::chr2:693380..693398,+#_659b7fab47e5e016c442289e52614903p@chr2:693380..693398, +
6.95e-79FFCP PHASE2:Hg19::chr1:81001398..81001426,+#_543c49f75d8e8bced080f411968077a2p1@ENST00000418041, p1@ENST00000443104
6.95e-79FFCP PHASE1:Hg19::chr1:81001398..81001426,+#_543c49f75d8e8bced080f411968077a2p1@ENST00000418041, p1@ENST00000443104
1.14e-78FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_dfb13bb7453a5adb0a8f3db77ca8767cp7@HOXA10
1.14e-78FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_dfb13bb7453a5adb0a8f3db77ca8767cp7@HOXA10
2.82e-76FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_c7d0e8490b368c62cd9ca3e89414eedep@chr7:7606139..7606151, -
2.82e-76FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_c7d0e8490b368c62cd9ca3e89414eedep@chr7:7606139..7606151, -
2.46e-75FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_36e516515532089c153aa43902922529p3@PAX2
2.46e-75FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_36e516515532089c153aa43902922529p3@PAX2
2.88e-75FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_31eccac14d9118a30786456380a4c072p@chr18:3456189..3456200, +
2.88e-75FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_31eccac14d9118a30786456380a4c072p@chr18:3456189..3456200, +
1.48e-74FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_c554f9cd77fbc1fea0cd668f3afebdbep2@B3GALT5
1.48e-74FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_c554f9cd77fbc1fea0cd668f3afebdbep2@B3GALT5
2.7e-74FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_004187c9a104d5847876009da1ce3315p@chr7:140227349..140227360, -
2.7e-74FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_004187c9a104d5847876009da1ce3315p@chr7:140227349..140227360, -
5.32e-74FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_427a9525a4cb541932794ce2284dcfebp4@PAX2
5.32e-74FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_427a9525a4cb541932794ce2284dcfebp4@PAX2
5.85e-74FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_8ac0e2dc05e298e7078174d508648b98p4@AIF1L
5.85e-74FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_8ac0e2dc05e298e7078174d508648b98p4@AIF1L
1.31e-72FFCP PHASE2:Hg19::chr20:6034607..6034616,-#_efdd51489e62ec0acca29f37490be6f3p6@LRRN4
1.31e-72FFCP PHASE1:Hg19::chr20:6034607..6034616,-#_efdd51489e62ec0acca29f37490be6f3p6@LRRN4
1.88e-70FFCP PHASE2:Hg19::chr20:6033532..6033548,-#_dde46130c24198bad8c13ba6470c9cebp2@AB527789
1.88e-70FFCP PHASE1:Hg19::chr20:6033532..6033548,-#_dde46130c24198bad8c13ba6470c9cebp2@AB527789
1.06e-64FFCP PHASE2:Hg19::chr16:3068288..3068312,-#_31f190bc7ba1d0062103430f607421e5p2@CLDN6
1.06e-64FFCP PHASE1:Hg19::chr16:3068288..3068312,-#_31f190bc7ba1d0062103430f607421e5p2@CLDN6
2.76e-64FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_cb793c2f88170672e2575e4968587e25p@chr7:98453821..98453843, -
2.76e-64FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_cb793c2f88170672e2575e4968587e25p@chr7:98453821..98453843, -
1.24e-63FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_4bc2dd73f0745d0724a07f1233c0ec94p@chr16:86604624..86604648, +
1.24e-63FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_4bc2dd73f0745d0724a07f1233c0ec94p@chr16:86604624..86604648, +
4.48e-60FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_e775e7e5cc05e80e28aedcc9b3516f6cp3@AIF1L
4.48e-60FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_e775e7e5cc05e80e28aedcc9b3516f6cp3@AIF1L
1.1e-59FFCP PHASE2:Hg19::chr1:20465872..20465881,+#_849c01fc76a6ec663a87349e1f25bd61p2@PLA2G2F
1.1e-59FFCP PHASE1:Hg19::chr1:20465872..20465881,+#_849c01fc76a6ec663a87349e1f25bd61p2@PLA2G2F
2.05e-59FFCP PHASE1:Hg19::chr2:31361432..31361442,-#_73d49992371e85bc1fba41ed6770f4eep6@GALNT14
2.05e-59FFCP PHASE2:Hg19::chr2:31361432..31361442,-#_73d49992371e85bc1fba41ed6770f4eep6@GALNT14
8.36e-59FFCP PHASE2:Hg19::chr20:6033120..6033128,-#_473f1fde4a22e5ccbf93942e6ef7c001p4@AB527789
8.36e-59FFCP PHASE1:Hg19::chr20:6033120..6033128,-#_473f1fde4a22e5ccbf93942e6ef7c001p4@AB527789
7.62e-57FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_58e6a9b91ae71514a0f484f7198cd997p16@HOXA10
7.62e-57FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_58e6a9b91ae71514a0f484f7198cd997p16@HOXA10
1.32e-55FFCP PHASE2:Hg19::chr21:46826248..46826282,-#_4d6768b9a17fc4dfe2fd6fafc8fa2632p@chr21:46826248..46826282, -
1.32e-55FFCP PHASE1:Hg19::chr21:46826248..46826282,-#_4d6768b9a17fc4dfe2fd6fafc8fa2632p@chr21:46826248..46826282, -
6.62e-55FFCP PHASE2:Hg19::chr2:693362..693373,+#_c0362d9e8d92b7b2f1b5f6281e721439p@chr2:693362..693373, +
6.62e-55FFCP PHASE1:Hg19::chr2:693362..693373,+#_c0362d9e8d92b7b2f1b5f6281e721439p@chr2:693362..693373, +
1.99e-53FFCP PHASE2:Hg19::chr17:36104873..36104903,-#_ff9e22e9bc5ed729477b79c5aadd1f31p3@HNF1B
1.99e-53FFCP PHASE1:Hg19::chr17:36104873..36104903,-#_ff9e22e9bc5ed729477b79c5aadd1f31p3@HNF1B
7.76e-53FFCP PHASE2:Hg19::chr10:102505493..102505546,+#_df9adab73bc5c5cebf5879ec81b42a91p2@PAX2
7.76e-53FFCP PHASE1:Hg19::chr10:102505493..102505546,+#_df9adab73bc5c5cebf5879ec81b42a91p2@PAX2
2.69e-52FFCP PHASE2:Hg19::chr9:71735910..71735923,+#_2216a689ac2988a78c520a54d6fa12f1p16@TJP2
2.69e-52FFCP PHASE1:Hg19::chr9:71735910..71735923,+#_2216a689ac2988a78c520a54d6fa12f1p16@TJP2
1.51e-50FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_3ffeacecd27514ebd4f2f2db68407c1bp2@C14orf105
1.51e-50FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_3ffeacecd27514ebd4f2f2db68407c1bp2@C14orf105
2.93e-50FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_8787d7c41f7b5b6b61e65eb01b40c8cdp1@CLDN16
2.93e-50FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_8787d7c41f7b5b6b61e65eb01b40c8cdp1@CLDN16
4.36e-50FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_a485b86db67af0464256152fec2929b8p@chr5:74244100..74244117, +
4.36e-50FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_a485b86db67af0464256152fec2929b8p@chr5:74244100..74244117, +
4.9e-49FFCP PHASE2:Hg19::chr7:140227303..140227330,-#_131017291313867167e36ee2ccef2131p@chr7:140227303..140227330, -
4.9e-49FFCP PHASE1:Hg19::chr7:140227303..140227330,-#_131017291313867167e36ee2ccef2131p@chr7:140227303..140227330, -
3.7e-48FFCP PHASE2:Hg19::chr7:7606153..7606181,-#_e1f90a87a29b01d2d8f362e053a74076p@chr7:7606153..7606181, -
3.7e-48FFCP PHASE1:Hg19::chr7:7606153..7606181,-#_e1f90a87a29b01d2d8f362e053a74076p@chr7:7606153..7606181, -
8.06e-47FFCP PHASE2:Hg19::chr17:35293932..35293947,-#_d3a8c9be1f1f1a976edfa10d54d23521p2@ENST00000529264
8.06e-47FFCP PHASE1:Hg19::chr17:35293932..35293947,-#_d3a8c9be1f1f1a976edfa10d54d23521p2@ENST00000529264
8.19e-47FFCP PHASE2:Hg19::chr6:24358114..24358125,-#_5ad2ced81d478d05e50730be4efc03ffp4@DCDC2
8.19e-47FFCP PHASE1:Hg19::chr6:24358114..24358125,-#_5ad2ced81d478d05e50730be4efc03ffp4@DCDC2
1.44e-46FFCP PHASE1:Hg19::chr2:177016336..177016350,+#_13580d4d2275b1da009b59443e93154fp1@HOXD4
1.44e-46FFCP PHASE2:Hg19::chr2:177016336..177016350,+#_13580d4d2275b1da009b59443e93154fp1@HOXD4
3.39e-46FFCP PHASE1:Hg19::chr7:27219849..27219867,-#_87c3b365e06ee69939588c556e9c94c1p6@HOXA10
3.39e-46FFCP PHASE2:Hg19::chr7:27219849..27219867,-#_87c3b365e06ee69939588c556e9c94c1p6@HOXA10
5.96e-46FFCP PHASE2:Hg19::chr20:6034576..6034592,-#_0d41329f581e400524055c32be044f33p3@LRRN4
5.96e-46FFCP PHASE1:Hg19::chr20:6034576..6034592,-#_0d41329f581e400524055c32be044f33p3@LRRN4
1.77e-45FFCP PHASE2:Hg19::chr2:165603346..165603357,-#_2d19075d1c141923f254b683a0499b07p@chr2:165603346..165603357, -
1.77e-45FFCP PHASE1:Hg19::chr2:165603346..165603357,-#_2d19075d1c141923f254b683a0499b07p@chr2:165603346..165603357, -
5.1e-45FFCP PHASE2:Hg19::chr6:30890599..30890626,+#_19e13a927c759fc7ae9d81dbd95150efp4@VARS2
5.1e-45FFCP PHASE1:Hg19::chr6:30890599..30890626,+#_19e13a927c759fc7ae9d81dbd95150efp4@VARS2
5.13e-45FFCP PHASE2:Hg19::chr9:133986740..133986750,+#_0dbfb9735ab69a9d0906433c599594ecp7@AIF1L
5.13e-45FFCP PHASE1:Hg19::chr9:133986740..133986750,+#_0dbfb9735ab69a9d0906433c599594ecp7@AIF1L
5.16e-45FFCP PHASE2:Hg19::chr20:62327738..62327751,+#_1dbbfc732b92a2d8fae6d5e3be4f7ea8p2@TNFRSF6B
5.16e-45FFCP PHASE1:Hg19::chr20:62327738..62327751,+#_1dbbfc732b92a2d8fae6d5e3be4f7ea8p2@TNFRSF6B
6.97e-45FFCP PHASE1:Hg19::chr9:112260040..112260045,+#_400632b59a0318733cf3fca4af1a1f5ap@chr9:112260040..112260045, +
6.97e-45FFCP PHASE2:Hg19::chr9:112260040..112260045,+#_400632b59a0318733cf3fca4af1a1f5ap@chr9:112260040..112260045, +
7.39e-45FFCP PHASE2:Hg19::chr20:6034241..6034256,-#_adf52885e250e2c450d52dec3536d2cap@chr20:6034241..6034256, -
7.39e-45FFCP PHASE1:Hg19::chr20:6034241..6034256,-#_adf52885e250e2c450d52dec3536d2cap@chr20:6034241..6034256, -
1.28e-44FFCP PHASE1:Hg19::chr10:102505312..102505320,+#_a805829427e6028e5457e620b6309b49p6@PAX2
1.28e-44FFCP PHASE2:Hg19::chr10:102505312..102505320,+#_a805829427e6028e5457e620b6309b49p6@PAX2
1.67e-44FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_063fc2caf4b8ad3013b18dda9d974abcp@chr9:119741711..119741743, -
1.67e-44FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_063fc2caf4b8ad3013b18dda9d974abcp@chr9:119741711..119741743, -
4.94e-44FFCP PHASE1:Hg19::chr7:27160553..27160560,+#_c690bda1dd3995a94973a908cd7c3ce1p1@ENST00000523364, p1@uc010kux.1
4.94e-44FFCP PHASE2:Hg19::chr7:27160553..27160560,+#_c690bda1dd3995a94973a908cd7c3ce1p1@ENST00000523364, p1@uc010kux.1
9.32e-44FFCP PHASE2:Hg19::chr11:117688216..117688234,-#_15c8c1ee3a3c045295ceb45948d9b250p2@DSCAML1
9.32e-44FFCP PHASE1:Hg19::chr11:117688216..117688234,-#_15c8c1ee3a3c045295ceb45948d9b250p2@DSCAML1
1.2e-43FFCP PHASE2:Hg19::chr1:47655966..47655990,-#_20cb698e2f26e0820a33e6799ef37368p2@PDZK1IP1
1.2e-43FFCP PHASE1:Hg19::chr1:47655966..47655990,-#_20cb698e2f26e0820a33e6799ef37368p2@PDZK1IP1
1.45e-43FFCP PHASE2:Hg19::chr11:117695245..117695263,-#_ed3074c976eedee9013f536a89ef71c5p7@FXYD2
1.45e-43FFCP PHASE1:Hg19::chr11:117695245..117695263,-#_ed3074c976eedee9013f536a89ef71c5p7@FXYD2
5.15e-43FFCP PHASE2:Hg19::chr10:91043420..91043437,+#_8677a49b791b800ec1f5a0b45454048fp1@ENST00000444849
5.15e-43FFCP PHASE1:Hg19::chr10:91043420..91043437,+#_8677a49b791b800ec1f5a0b45454048fp1@ENST00000444849

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