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{{UBERON
{{UBERON
|id=UBERON:0004912
|alt_id=
|name=biliary bud
|namespace=
|def=
|xref=EHDAA2:0000171;;EMAPA:16561;;EMAPA:16565;;http://upload.wikimedia.org/wikipedia/commons/thumb/4/4f/Gray1088.png/200px-Gray1088.png;;VHOG:0001351
|is_a=UBERON:0003914;;UBERON:0009497
|synonym="hepatic diverticulum" RELATED [EMAPA:16561]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0004161
|develops_from=UBERON:0004161
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004912
|is_a=UBERON:0003914 ;;UBERON:0009497
|is_obsolete=
|located_in=
|located_in=
|name=biliary bud
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0006235
|part_of=UBERON:0006235
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="hepatic diverticulum" RELATED [EMAPA:16561]
|union_of=
|xref=EHDAA2:0000171;;EMAPA:16561;;EMAPA:16565;;http://upload.wikimedia.org/wikipedia/commons/thumb/4/4f/Gray1088.png/200px-Gray1088.png;;VHOG:0001351
}}
}}

Latest revision as of 17:49, 12 September 2014

Name:biliary bud
Namespace:FANTOM
Xrefs:
links:

EHDAA2:0000171
EMAPA:16561
EMAPA:16565
[ 200px-Gray1088.png 200px-Gray1088.png]

VHOG:0001351
Synonyms: "hepatic diverticulum" RELATED [EMAPA:16561]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003914(epithelial tube),UBERON:0009497(epithelium of foregut-midgut junction)
develops_from:UBERON:0004161(septum transversum)
part_of:UBERON:0006235(foregut-midgut junction)



Children

develops from:UBERON:0001173 (biliary tree),UBERON:0002110 (gallbladder)
part of:UBERON:0006242 (gall bladder primordium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004912 (biliary bud), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.07e-86FFCP PHASE2:Mm9::chr10:93819538..93819549,+#_5a602257860f31ae6792ece8522f4c51p@chr10:93819538..93819549, +
3.07e-86FFCP PHASE1:Mm9::chr11:118287827..118287833,-#_5a602257860f31ae6792ece8522f4c51p@chr11:118287827..118287833, -
3.07e-86FFCP PHASE1:Mm9::chr4:86335502..86335509,+#_5a602257860f31ae6792ece8522f4c51p@chr4:86335502..86335509, +
3.07e-86FFCP PHASE2:Mm9::chr13:113053257..113053258,+#_5a602257860f31ae6792ece8522f4c51p@chr13:113053257..113053258, +
3.07e-86FFCP PHASE1:Mm9::chr10:8471698..8471701,+#_5a602257860f31ae6792ece8522f4c51p@chr10:8471698..8471701, +
3.07e-86FFCP PHASE1:Mm9::chr2:84756280..84756286,+#_5a602257860f31ae6792ece8522f4c51p@chr2:84756280..84756286, +
3.07e-86FFCP PHASE2:Mm9::chr18:60398371..60398393,-#_5a602257860f31ae6792ece8522f4c51p@chr18:60398371..60398393, -
3.07e-86FFCP PHASE2:Mm9::chr8:89310639..89310641,-#_5a602257860f31ae6792ece8522f4c51p@chr8:89310639..89310641, -
3.07e-86FFCP PHASE1:Mm9::chr9:45920408..45920437,-#_5a602257860f31ae6792ece8522f4c51p@chr9:45920408..45920437, -
3.07e-86FFCP PHASE1:Mm9::chr2:133323630..133323631,+#_5a602257860f31ae6792ece8522f4c51p@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr1:173044327..173044331,+#_5a602257860f31ae6792ece8522f4c51p@chr1:173044327..173044331, +
3.07e-86FFCP PHASE1:Mm9::chr14:8928284..8928331,+#_5a602257860f31ae6792ece8522f4c51p@chr14:8928284..8928331, +
3.07e-86FFCP PHASE2:Mm9::chr14:8928284..8928331,+#_5a602257860f31ae6792ece8522f4c51p@chr14:8928284..8928331, +
3.07e-86FFCP PHASE2:Mm9::chr9:62199266..62199267,+#_5a602257860f31ae6792ece8522f4c51p@chr9:62199266..62199267, +
3.07e-86FFCP PHASE2:Mm9::chr5:124112234..124112240,+#_5a602257860f31ae6792ece8522f4c51p@chr5:124112234..124112240, +
3.07e-86FFCP PHASE2:Mm9::chr8:127816016..127816021,+#_5a602257860f31ae6792ece8522f4c51p@chr8:127816016..127816021, +
3.07e-86FFCP PHASE2:Mm9::chr17:67870501..67870507,+#_5a602257860f31ae6792ece8522f4c51p@chr17:67870501..67870507, +
3.07e-86FFCP PHASE1:Mm9::chr15:32178407..32178408,-#_5a602257860f31ae6792ece8522f4c51p@chr15:32178407..32178408, -
3.07e-86FFCP PHASE2:Mm9::chr11:119254092..119254100,-#_5a602257860f31ae6792ece8522f4c51p@chr11:119254092..119254100, -
3.07e-86FFCP PHASE1:Mm9::chr12:86691503..86691504,-#_5a602257860f31ae6792ece8522f4c51p@chr12:86691503..86691504, -
3.07e-86FFCP PHASE2:Mm9::chr10:8471698..8471701,+#_5a602257860f31ae6792ece8522f4c51p@chr10:8471698..8471701, +
3.07e-86FFCP PHASE2:Mm9::chr13:113550715..113550722,-#_5a602257860f31ae6792ece8522f4c51p@chr13:113550715..113550722, -
3.07e-86FFCP PHASE1:Mm9::chr10:93942324..93942342,-#_5a602257860f31ae6792ece8522f4c51p@chr10:93942324..93942342, -
3.07e-86FFCP PHASE2:Mm9::chr1:132405466..132405470,+#_5a602257860f31ae6792ece8522f4c51p@chr1:132405466..132405470, +
3.07e-86FFCP PHASE2:Mm9::chr11:117829935..117829959,-#_5a602257860f31ae6792ece8522f4c51p@chr11:117829935..117829959, -
3.07e-86FFCP PHASE2:Mm9::chr12:87046930..87046933,+#_5a602257860f31ae6792ece8522f4c51p@chr12:87046930..87046933, +
3.07e-86FFCP PHASE2:Mm9::chr13:96429295..96429302,-#_5a602257860f31ae6792ece8522f4c51p@chr13:96429295..96429302, -
3.07e-86FFCP PHASE2:Mm9::chr4:62009160..62009164,-#_5a602257860f31ae6792ece8522f4c51p@chr4:62009160..62009164, -
3.07e-86FFCP PHASE2:Mm9::chr12:25364645..25364655,+#_5a602257860f31ae6792ece8522f4c51p@chr12:25364645..25364655, +
3.07e-86FFCP PHASE2:Mm9::chr19:29573929..29573932,+#_5a602257860f31ae6792ece8522f4c51p@chr19:29573929..29573932, +
3.07e-86FFCP PHASE1:Mm9::chr17:24807620..24807650,-#_5a602257860f31ae6792ece8522f4c51p@chr17:24807620..24807650, -
3.07e-86FFCP PHASE1:Mm9::chr15:82193340..82193343,+#_5a602257860f31ae6792ece8522f4c51p@chr15:82193340..82193343, +
3.07e-86FFCP PHASE1:Mm9::chr18:39297570..39297573,-#_5a602257860f31ae6792ece8522f4c51p@chr18:39297570..39297573, -
3.07e-86FFCP PHASE1:Mm9::chr14:15179132..15179141,+#_5a602257860f31ae6792ece8522f4c51p8@Il3ra
3.07e-86FFCP PHASE1:Mm9::chr2:11935531..11935538,-#_5a602257860f31ae6792ece8522f4c51p@chr2:11935531..11935538, -
3.07e-86FFCP PHASE1:Mm9::chr17:35093377..35093381,+#_5a602257860f31ae6792ece8522f4c51p@chr17:35093377..35093381, +
3.07e-86FFCP PHASE2:Mm9::chr6:15678147..15678149,-#_5a602257860f31ae6792ece8522f4c51p@chr6:15678147..15678149, -
3.07e-86FFCP PHASE2:Mm9::chr11:109223756..109223764,-#_5a602257860f31ae6792ece8522f4c51p@chr11:109223756..109223764, -
3.07e-86FFCP PHASE2:Mm9::chr12:74684893..74684910,-#_5a602257860f31ae6792ece8522f4c51p@chr12:74684893..74684910, -
3.07e-86FFCP PHASE2:Mm9::chr4:126939557..126939562,+#_5a602257860f31ae6792ece8522f4c51p@chr4:126939557..126939562, +
3.07e-86FFCP PHASE1:Mm9::chr18:35881716..35881727,-#_5a602257860f31ae6792ece8522f4c51p@chr18:35881716..35881727, -
3.07e-86FFCP PHASE1:Mm9::chr13:96429295..96429302,-#_5a602257860f31ae6792ece8522f4c51p@chr13:96429295..96429302, -
3.07e-86FFCP PHASE1:Mm9::chr9:42915220..42915225,-#_5a602257860f31ae6792ece8522f4c51p@chr9:42915220..42915225, -
3.07e-86FFCP PHASE1:Mm9::chr13:113543694..113543702,-#_5a602257860f31ae6792ece8522f4c51p@chr13:113543694..113543702, -
3.07e-86FFCP PHASE2:Mm9::chr17:34798555..34798562,+#_5a602257860f31ae6792ece8522f4c51p@chr17:34798555..34798562, +
3.07e-86FFCP PHASE2:Mm9::chr16:91441786..91441787,-#_5a602257860f31ae6792ece8522f4c51p@chr16:91441786..91441787, -
3.07e-86FFCP PHASE2:Mm9::chr4:137487112..137487117,+#_5a602257860f31ae6792ece8522f4c51p@chr4:137487112..137487117, +
3.07e-86FFCP PHASE2:Mm9::chr14:15179132..15179141,+#_5a602257860f31ae6792ece8522f4c51p8@Il3ra
3.07e-86FFCP PHASE1:Mm9::chr8:11183699..11183703,-#_5a602257860f31ae6792ece8522f4c51p@chr8:11183699..11183703, -
3.07e-86FFCP PHASE1:Mm9::chr5:53111093..53111095,+#_5a602257860f31ae6792ece8522f4c51p@chr5:53111093..53111095, +
3.07e-86FFCP PHASE2:Mm9::chr12:86691530..86691535,-#_5a602257860f31ae6792ece8522f4c51p@chr12:86691530..86691535, -
3.07e-86FFCP PHASE2:Mm9::chr17:24807620..24807650,-#_5a602257860f31ae6792ece8522f4c51p@chr17:24807620..24807650, -
3.07e-86FFCP PHASE1:Mm9::chr10:117419958..117419964,+#_5a602257860f31ae6792ece8522f4c51p@chr10:117419958..117419964, +
3.07e-86FFCP PHASE1:Mm9::chr12:74684893..74684910,-#_5a602257860f31ae6792ece8522f4c51p@chr12:74684893..74684910, -
3.07e-86FFCP PHASE2:Mm9::chr17:35093764..35093773,-#_5a602257860f31ae6792ece8522f4c51p@chr17:35093764..35093773, -
3.07e-86FFCP PHASE2:Mm9::chr10:94580525..94580530,+#_5a602257860f31ae6792ece8522f4c51p@chr10:94580525..94580530, +
3.07e-86FFCP PHASE1:Mm9::chr1:66883923..66883955,-#_5a602257860f31ae6792ece8522f4c51p@chr1:66883923..66883955, -
3.07e-86FFCP PHASE2:Mm9::chr10:85585991..85586025,-#_5a602257860f31ae6792ece8522f4c51p@chr10:85585991..85586025, -
3.07e-86FFCP PHASE2:Mm9::chr9:42915101..42915106,-#_5a602257860f31ae6792ece8522f4c51p@chr9:42915101..42915106, -
3.07e-86FFCP PHASE1:Mm9::chr17:35096519..35096524,+#_5a602257860f31ae6792ece8522f4c51p@chr17:35096519..35096524, +
3.07e-86FFCP PHASE1:Mm9::chr16:28911901..28911906,-#_5a602257860f31ae6792ece8522f4c51p@chr16:28911901..28911906, -
3.07e-86FFCP PHASE2:Mm9::chr5:32912678..32912687,+#_5a602257860f31ae6792ece8522f4c51p@chr5:32912678..32912687, +
3.07e-86FFCP PHASE2:Mm9::chr10:93895817..93895819,-#_5a602257860f31ae6792ece8522f4c51p@chr10:93895817..93895819, -
3.07e-86FFCP PHASE1:Mm9::chr17:12388232..12388237,+#_5a602257860f31ae6792ece8522f4c51p@chr17:12388232..12388237, +
3.07e-86FFCP PHASE1:Mm9::chr8:127816016..127816021,+#_5a602257860f31ae6792ece8522f4c51p@chr8:127816016..127816021, +
3.07e-86FFCP PHASE1:Mm9::chr10:85585949..85585969,-#_5a602257860f31ae6792ece8522f4c51p@chr10:85585949..85585969, -
3.07e-86FFCP PHASE2:Mm9::chr10:117419958..117419964,+#_5a602257860f31ae6792ece8522f4c51p@chr10:117419958..117419964, +
3.07e-86FFCP PHASE2:Mm9::chr5:53111093..53111095,+#_5a602257860f31ae6792ece8522f4c51p@chr5:53111093..53111095, +
3.07e-86FFCP PHASE1:Mm9::chr10:21389022..21389032,+#_5a602257860f31ae6792ece8522f4c51p@chr10:21389022..21389032, +
3.07e-86FFCP PHASE1:Mm9::chr3:121593688..121593695,+#_5a602257860f31ae6792ece8522f4c51p@chr3:121593688..121593695, +
3.07e-86FFCP PHASE2:Mm9::chr2:11935531..11935538,-#_5a602257860f31ae6792ece8522f4c51p@chr2:11935531..11935538, -
3.07e-86FFCP PHASE2:Mm9::chr15:82193340..82193343,+#_5a602257860f31ae6792ece8522f4c51p@chr15:82193340..82193343, +
3.07e-86FFCP PHASE2:Mm9::chr1:66883923..66883955,-#_5a602257860f31ae6792ece8522f4c51p@chr1:66883923..66883955, -
3.07e-86FFCP PHASE2:Mm9::chr13:100000226..100000230,+#_5a602257860f31ae6792ece8522f4c51p@chr13:100000226..100000230, +
3.07e-86FFCP PHASE1:Mm9::chr12:100752983..100752984,+#_5a602257860f31ae6792ece8522f4c51p@chr12:100752983..100752984, +
3.07e-86FFCP PHASE2:Mm9::chr8:87745380..87745385,+#_5a602257860f31ae6792ece8522f4c51p@chr8:87745380..87745385, +
3.07e-86FFCP PHASE1:Mm9::chr4:126939557..126939562,+#_5a602257860f31ae6792ece8522f4c51p@chr4:126939557..126939562, +
3.07e-86FFCP PHASE2:Mm9::chr12:88237840..88237851,-#_5a602257860f31ae6792ece8522f4c51p@chr12:88237840..88237851, -
3.07e-86FFCP PHASE2:Mm9::chr17:35106363..35106372,-#_5a602257860f31ae6792ece8522f4c51p@chr17:35106363..35106372, -
3.07e-86FFCP PHASE2:Mm9::chr7:118133901..118133904,-#_5a602257860f31ae6792ece8522f4c51p@chr7:118133901..118133904, -
3.07e-86FFCP PHASE2:Mm9::chr8:25530071..25530072,+#_5a602257860f31ae6792ece8522f4c51p@chr8:25530071..25530072, +
3.07e-86FFCP PHASE2:Mm9::chr2:84756280..84756286,+#_5a602257860f31ae6792ece8522f4c51p@chr2:84756280..84756286, +
3.07e-86FFCP PHASE1:Mm9::chr12:86691530..86691535,-#_5a602257860f31ae6792ece8522f4c51p@chr12:86691530..86691535, -
3.07e-86FFCP PHASE2:Mm9::chr10:60279719..60279737,-#_5a602257860f31ae6792ece8522f4c51p@chr10:60279719..60279737, -
3.07e-86FFCP PHASE1:Mm9::chr15:90508949..90508955,-#_5a602257860f31ae6792ece8522f4c51p@chr15:90508949..90508955, -
3.07e-86FFCP PHASE1:Mm9::chr5:114422970..114422985,-#_5a602257860f31ae6792ece8522f4c51p@chr5:114422970..114422985, -
3.07e-86FFCP PHASE1:Mm9::chr18:60398371..60398393,-#_5a602257860f31ae6792ece8522f4c51p@chr18:60398371..60398393, -
3.07e-86FFCP PHASE2:Mm9::chr13:96429602..96429605,-#_5a602257860f31ae6792ece8522f4c51p@chr13:96429602..96429605, -
3.07e-86FFCP PHASE2:Mm9::chr15:88669906..88669914,+#_5a602257860f31ae6792ece8522f4c51p@chr15:88669906..88669914, +
3.07e-86FFCP PHASE2:Mm9::chr15:59435855..59435878,-#_5a602257860f31ae6792ece8522f4c51p@chr15:59435855..59435878, -
3.07e-86FFCP PHASE1:Mm9::chr11:107196799..107196814,+#_5a602257860f31ae6792ece8522f4c51p@chr11:107196799..107196814, +
3.07e-86FFCP PHASE2:Mm9::chr5:76329688..76329692,-#_5a602257860f31ae6792ece8522f4c51p@chr5:76329688..76329692, -
3.07e-86FFCP PHASE2:Mm9::chr7:117101788..117101793,+#_5a602257860f31ae6792ece8522f4c51p@chr7:117101788..117101793, +
3.07e-86FFCP PHASE1:Mm9::chr7:87919399..87919406,+#_5a602257860f31ae6792ece8522f4c51p@chr7:87919399..87919406, +
3.07e-86FFCP PHASE1:Mm9::chr10:60279719..60279737,-#_5a602257860f31ae6792ece8522f4c51p@chr10:60279719..60279737, -
3.07e-86FFCP PHASE1:Mm9::chr15:82207617..82207621,+#_5a602257860f31ae6792ece8522f4c51p@chr15:82207617..82207621, +
3.07e-86FFCP PHASE1:Mm9::chr18:39513150..39513152,+#_5a602257860f31ae6792ece8522f4c51p@chr18:39513150..39513152, +
3.07e-86FFCP PHASE2:Mm9::chr1:163794592..163794593,+#_5a602257860f31ae6792ece8522f4c51p@chr1:163794592..163794593, +
3.07e-86FFCP PHASE1:Mm9::chr17:35093616..35093631,-#_5a602257860f31ae6792ece8522f4c51p@chr17:35093616..35093631, -
3.07e-86FFCP PHASE1:Mm9::chr5:124112234..124112240,+#_5a602257860f31ae6792ece8522f4c51p@chr5:124112234..124112240, +

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