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{{UBERON
{{UBERON
|id=UBERON:0005311
|alt_id=
|name=mammary placode
|namespace=
|def="The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596]
|xref=
|is_a=UBERON:0005085
|synonym=
|comment=TODO develops_from
|comment=TODO develops_from
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0008425
|develops_from=UBERON:0008425
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005311
|is_a=UBERON:0011814
|is_obsolete=
|located_in=
|located_in=
|name=mammary placode
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 17:52, 12 September 2014

Name:mammary placode
Namespace:FANTOM
Definition:"The mammary placode is a transient lens shaped structure that will give rise to the mammary bud proper[GO]." [GO:0060596]
Comments:TODO develops_from

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0011814(non-neurogenic ectodermal placode)
develops_from:UBERON:0008425(mammary ridge)



Children

develops from:UBERON:0005333 (mammary bud)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005311 (mammary placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.72e-89FFCP PHASE1:Hg19::chr12:122439564..122439597,+#_68eadd04ad6c9526d6e8de375b98bfb1p4@WDR66
5.72e-89FFCP PHASE2:Hg19::chr12:122439564..122439597,+#_68eadd04ad6c9526d6e8de375b98bfb1p4@WDR66
2.57e-88FFCP PHASE2:Hg19::chr19:15160255..15160260,+#_2a4f481679d65f48b816b3eea23a99f1p4@CASP14
2.57e-88FFCP PHASE1:Hg19::chr19:15160255..15160260,+#_2a4f481679d65f48b816b3eea23a99f1p4@CASP14
1.87e-86FFCP PHASE2:Mm9::chr4:118636825..118636828,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:118636825..118636828, +
1.87e-86FFCP PHASE2:Mm9::chr5:88209021..88209051,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88209021..88209051, +
1.87e-86FFCP PHASE1:Mm9::chr11:6535581..6535586,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:6535581..6535586, -
1.87e-86FFCP PHASE2:Mm9::chr15:103393725..103393729,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393725..103393729, -
1.87e-86FFCP PHASE2:Mm9::chr5:88107041..88107085,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88107041..88107085, +
1.87e-86FFCP PHASE1:Mm9::chr5:88210832..88210837,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88210832..88210837, +
1.87e-86FFCP PHASE1:Mm9::chr5:88102247..88102287,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88102247..88102287, +
1.87e-86FFCP PHASE1:Mm9::chr18:81785997..81786001,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr18:81785997..81786001, -
1.87e-86FFCP PHASE2:Mm9::chr2:99574978..99574987,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr2:99574978..99574987, +
1.87e-86FFCP PHASE1:Mm9::chr4:40836029..40836032,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:40836029..40836032, +
1.87e-86FFCP PHASE1:Mm9::chr16:45163355..45163401,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr16:45163355..45163401, +
1.87e-86FFCP PHASE1:Mm9::chr15:103393393..103393402,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393393..103393402, +
1.87e-86FFCP PHASE2:Mm9::chr11:6538794..6538800,-#_30b6d7c8bf53f346980477d3b2cc2429p4@Wap
1.87e-86FFCP PHASE2:Mm9::chr1:23404398..23404401,-#_30b6d7c8bf53f346980477d3b2cc2429p1@uc007amc.1
1.87e-86FFCP PHASE2:Mm9::chr5:88123730..88123744,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123730..88123744, +
1.87e-86FFCP PHASE1:Mm9::chr5:88123612..88123619,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123612..88123619, +
1.87e-86FFCP PHASE2:Mm9::chr5:88204791..88204807,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88204791..88204807, +
1.87e-86FFCP PHASE1:Mm9::chr5:88126190..88126195,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88126190..88126195, -
1.87e-86FFCP PHASE1:Mm9::chr2:140424221..140424232,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr2:140424221..140424232, +
1.87e-86FFCP PHASE2:Mm9::chr8:39536780..39536784,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:39536780..39536784, -
1.87e-86FFCP PHASE2:Mm9::chr11:109616343..109616364,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:109616343..109616364, +
1.87e-86FFCP PHASE2:Mm9::chr15:103393297..103393307,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393297..103393307, -
1.87e-86FFCP PHASE2:Mm9::chr5:88103072..88103090,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88103072..88103090, +
1.87e-86FFCP PHASE2:Mm9::chr16:45163355..45163401,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr16:45163355..45163401, +
1.87e-86FFCP PHASE1:Mm9::chr9:68417059..68417064,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:68417059..68417064, -
1.87e-86FFCP PHASE1:Mm9::chr5:88207188..88207211,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88207188..88207211, +
1.87e-86FFCP PHASE1:Mm9::chr5:88097350..88097355,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88097350..88097355, +
1.87e-86FFCP PHASE1:Mm9::chr18:6733731..6733747,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr18:6733731..6733747, +
1.87e-86FFCP PHASE2:Mm9::chr5:88215700..88215705,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88215700..88215705, +
1.87e-86FFCP PHASE2:Mm9::chr17:12054056..12054058,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr17:12054056..12054058, -
1.87e-86FFCP PHASE2:Mm9::chr11:6535548..6535558,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:6535548..6535558, -
1.87e-86FFCP PHASE1:Mm9::chr5:88121850..88121857,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88121850..88121857, -
1.87e-86FFCP PHASE2:Mm9::chr5:88361418..88361423,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88361418..88361423, +
1.87e-86FFCP PHASE2:Mm9::chr5:88126164..88126171,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88126164..88126171, -
1.87e-86FFCP PHASE1:Mm9::chr5:88359054..88359083,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88359054..88359083, -
1.87e-86FFCP PHASE1:Mm9::chr5:88123868..88123890,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123868..88123890, +
1.87e-86FFCP PHASE2:Mm9::chr12:45501817..45501821,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr12:45501817..45501821, +
1.87e-86FFCP PHASE2:Mm9::chr5:88097629..88097633,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88097629..88097633, +
1.87e-86FFCP PHASE1:Mm9::chr5:53448964..53448972,+#_30b6d7c8bf53f346980477d3b2cc2429p4@Slc34a2
1.87e-86FFCP PHASE1:Mm9::chr4:118634296..118634303,+#_30b6d7c8bf53f346980477d3b2cc2429p6@Lao1
1.87e-86FFCP PHASE1:Mm9::chr15:98312398..98312401,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:98312398..98312401, -
1.87e-86FFCP PHASE2:Mm9::chr15:98312398..98312401,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:98312398..98312401, -
1.87e-86FFCP PHASE2:Mm9::chr1:40637138..40637147,+#_30b6d7c8bf53f346980477d3b2cc2429p10@Slc9a4
1.87e-86FFCP PHASE2:Mm9::chr5:88213608..88213623,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88213608..88213623, -
1.87e-86FFCP PHASE1:Mm9::chr4:118640697..118640705,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:118640697..118640705, +
1.87e-86FFCP PHASE2:Mm9::chr1:193093195..193093197,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr1:193093195..193093197, -
1.87e-86FFCP PHASE2:Mm9::chr5:88121858..88121866,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88121858..88121866, -
1.87e-86FFCP PHASE1:Mm9::chr5:88215676..88215679,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88215676..88215679, +
1.87e-86FFCP PHASE1:Mm9::chr5:88109833..88109851,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88109833..88109851, +
1.87e-86FFCP PHASE1:Mm9::chr10:69144379..69144384,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr10:69144379..69144384, +
1.87e-86FFCP PHASE2:Mm9::chr18:6733777..6733786,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr18:6733777..6733786, +
1.87e-86FFCP PHASE2:Mm9::chr5:88358899..88358903,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358899..88358903, +
1.87e-86FFCP PHASE2:Mm9::chr5:38893329..38893340,-#_30b6d7c8bf53f346980477d3b2cc2429p8@Slc2a9
1.87e-86FFCP PHASE1:Mm9::chr15:50141424..50141428,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:50141424..50141428, -
1.87e-86FFCP PHASE1:Mm9::chr5:88358889..88358911,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88358889..88358911, -
1.87e-86FFCP PHASE1:Mm9::chr5:88123698..88123707,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123698..88123707, -
1.87e-86FFCP PHASE1:Mm9::chr11:109616343..109616364,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:109616343..109616364, +
1.87e-86FFCP PHASE2:Mm9::chr4:118640761..118640774,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr4:118640761..118640774, +
1.87e-86FFCP PHASE1:Mm9::chr7:35963309..35963311,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr7:35963309..35963311, -
1.87e-86FFCP PHASE1:Mm9::chr15:90146874..90146878,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:90146874..90146878, -
1.87e-86FFCP PHASE2:Mm9::chr5:88209981..88209984,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88209981..88209984, +
1.87e-86FFCP PHASE2:Mm9::chr2:134688699..134688701,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr2:134688699..134688701, +
1.87e-86FFCP PHASE1:Mm9::chr14:32247505..32247512,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr14:32247505..32247512, -
1.87e-86FFCP PHASE1:Mm9::chr11:6537276..6537305,-#_30b6d7c8bf53f346980477d3b2cc2429p2@Wap
1.87e-86FFCP PHASE2:Mm9::chr12:8768872..8768876,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr12:8768872..8768876, -
1.87e-86FFCP PHASE2:Mm9::chr5:88109869..88109894,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88109869..88109894, +
1.87e-86FFCP PHASE1:Mm9::chr5:88213564..88213565,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88213564..88213565, +
1.87e-86FFCP PHASE1:Mm9::chr5:88104026..88104055,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88104026..88104055, +
1.87e-86FFCP PHASE1:Mm9::chr1:40637157..40637179,+#_30b6d7c8bf53f346980477d3b2cc2429p3@Slc9a4
1.87e-86FFCP PHASE1:Mm9::chr8:8021158..8021161,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:8021158..8021161, -
1.87e-86FFCP PHASE1:Mm9::chr15:103393764..103393775,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393764..103393775, -
1.87e-86FFCP PHASE2:Mm9::chr4:118634330..118634340,+#_30b6d7c8bf53f346980477d3b2cc2429p4@Lao1
1.87e-86FFCP PHASE1:Mm9::chr9:107419666..107419669,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:107419666..107419669, -
1.87e-86FFCP PHASE1:Mm9::chr17:30084999..30085000,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr17:30084999..30085000, +
1.87e-86FFCP PHASE2:Mm9::chr5:88206460..88206469,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88206460..88206469, +
1.87e-86FFCP PHASE1:Mm9::chr5:88203952..88203961,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88203952..88203961, +
1.87e-86FFCP PHASE2:Mm9::chr11:109658712..109658715,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:109658712..109658715, -
1.87e-86FFCP PHASE2:Mm9::chr15:103393393..103393402,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393393..103393402, +
1.87e-86FFCP PHASE2:Mm9::chr5:88104060..88104087,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88104060..88104087, -
1.87e-86FFCP PHASE1:Mm9::chr9:77686699..77686701,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr9:77686699..77686701, +
1.87e-86FFCP PHASE1:Mm9::chr5:88209161..88209183,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88209161..88209183, -
1.87e-86FFCP PHASE1:Mm9::chr5:88099935..88099953,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88099935..88099953, -
1.87e-86FFCP PHASE2:Mm9::chr2:93360875..93360880,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr2:93360875..93360880, -
1.87e-86FFCP PHASE2:Mm9::chr1:139647999..139648007,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr1:139647999..139648007, -
1.87e-86FFCP PHASE2:Mm9::chr5:88217757..88217772,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88217757..88217772, +
1.87e-86FFCP PHASE1:Mm9::chr8:52461156..52461158,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr8:52461156..52461158, +
1.87e-86FFCP PHASE1:Mm9::chr15:103393297..103393307,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393297..103393307, -
1.87e-86FFCP PHASE2:Mm9::chr11:6537234..6537253,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr11:6537234..6537253, +
1.87e-86FFCP PHASE2:Mm9::chr5:88123692..88123697,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123692..88123697, -
1.87e-86FFCP PHASE1:Mm9::chr5:88123567..88123572,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88123567..88123572, +
1.87e-86FFCP PHASE1:Mm9::chr12:52131128..52131133,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr12:52131128..52131133, -
1.87e-86FFCP PHASE1:Mm9::chr17:12054056..12054058,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr17:12054056..12054058, -
1.87e-86FFCP PHASE2:Mm9::chr18:53658339..53658343,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr18:53658339..53658343, -
1.87e-86FFCP PHASE1:Mm9::chr5:88124293..88124295,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88124293..88124295, -
1.87e-86FFCP PHASE2:Mm9::chr15:103393256..103393264,-#_30b6d7c8bf53f346980477d3b2cc2429p@chr15:103393256..103393264, -
1.87e-86FFCP PHASE2:Mm9::chr5:88100023..88100041,+#_30b6d7c8bf53f346980477d3b2cc2429p@chr5:88100023..88100041, +

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