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{{UBERON
{{UBERON
|id=UBERON:0005427
|alt_id=
|name=corneal primordium
|namespace=
|def="Portion of tissue that is part of the eye and gives rise to the mature, fully layered cornea." [ZFIN:ZDB-PUB-061010-3]
|xref=ZFA:0001688
|is_a=UBERON:0000479;;UBERON:0001048;;UBERON:0004121
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Portion of tissue that is part of the eye and gives rise to the mature, fully layered cornea." [ZFIN:ZDB-PUB-061010-3]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0002342
|develops_from=UBERON:0002342
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005427
|is_a=UBERON:0000479 ;;UBERON:0001048 ;;UBERON:0010312 ;;UBERON:0010313
|is_obsolete=
|located_in=
|located_in=
|name=corneal primordium
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000019
|part_of=UBERON:0000019
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym=
|union_of=
|xref=TAO:0002188;;ZFA:0001688
}}
}}

Latest revision as of 17:53, 12 September 2014

Name:corneal primordium
Namespace:FANTOM
Definition:"Portion of tissue that is part of the eye and gives rise to the mature, fully layered cornea." [ZFIN:ZDB-PUB-061010-3]
Xrefs:
links:

TAO:0002188

ZFA:0001688

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000479(tissue),UBERON:0001048(primordium),UBERON:0010312(immature eye),UBERON:0010313(neural crest-derived structure)
develops_from:UBERON:0002342(neural crest)
part_of:UBERON:0000019(camera-type eye)



Children

develops from:UBERON:0000964 (cornea)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005427 (corneal primordium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.67e-66FFCP PHASE1:Hg19::chr17:39023189..39023197,-#_ee34824d97040a7ae6e4116d8a05f109p2@KRT12
4.67e-66FFCP PHASE2:Hg19::chr17:39023189..39023197,-#_ee34824d97040a7ae6e4116d8a05f109p2@KRT12
3.1e-50FFCP PHASE2:Hg19::chr7:150910973..150910976,-#_22ed31d2c65fd590411d046840d80921p@chr7:150910973..150910976, -
3.1e-50FFCP PHASE2:Hg19::chr3:52362029..52362031,+#_22ed31d2c65fd590411d046840d80921p@chr3:52362029..52362031, +
3.1e-50FFCP PHASE1:Hg19::chr7:150910973..150910976,-#_22ed31d2c65fd590411d046840d80921p@chr7:150910973..150910976, -
3.1e-50FFCP PHASE1:Hg19::chr3:52362029..52362031,+#_22ed31d2c65fd590411d046840d80921p@chr3:52362029..52362031, +
3.31e-40FFCP PHASE2:Hg19::chr12:53189894..53189905,-#_411eb4d005904170a0593516af850e0bp1@KRT3
3.31e-40FFCP PHASE1:Hg19::chr12:53189894..53189905,-#_411eb4d005904170a0593516af850e0bp1@KRT3
5.98e-34FFCP PHASE1:Hg19::chr22:30144620..30144638,-#_58217bb4b2b6799ac5dd0dc2befaf403p7@ZMAT5
5.98e-34FFCP PHASE2:Hg19::chr22:30144620..30144638,-#_58217bb4b2b6799ac5dd0dc2befaf403p7@ZMAT5
1.17e-33FFCP PHASE1:Hg19::chr8:124206334..124206344,+#_6f31c9720b1dffaf87aa5e6e05e7a18cp@chr8:124206334..124206344, +
1.17e-33FFCP PHASE2:Hg19::chr8:124206334..124206344,+#_6f31c9720b1dffaf87aa5e6e05e7a18cp@chr8:124206334..124206344, +
3.16e-29FFCP PHASE2:Hg19::chr1:19403546..19403571,-#_cb3fef201ffae925d761bada2c28cd5fp@chr1:19403546..19403571, -
3.16e-29FFCP PHASE1:Hg19::chr7:1600419..1600429,-#_cb3fef201ffae925d761bada2c28cd5fp11@TMEM184A
3.16e-29FFCP PHASE2:Hg19::chr7:1600419..1600429,-#_cb3fef201ffae925d761bada2c28cd5fp11@TMEM184A
3.16e-29FFCP PHASE1:Hg19::chr1:19403546..19403571,-#_cb3fef201ffae925d761bada2c28cd5fp@chr1:19403546..19403571, -
5.61e-29FFCP PHASE2:Hg19::chr12:48164790..48164808,-#_d04aacc5810f44db29013de0abe7b408p16@RAPGEF3
5.61e-29FFCP PHASE1:Hg19::chr12:48164790..48164808,-#_d04aacc5810f44db29013de0abe7b408p16@RAPGEF3
5.61e-29FFCP PHASE1:Hg19::chr20:43743762..43743770,-#_d04aacc5810f44db29013de0abe7b408p3@WFDC5
5.61e-29FFCP PHASE2:Hg19::chr20:43743762..43743770,-#_d04aacc5810f44db29013de0abe7b408p3@WFDC5
5.56e-26FFCP PHASE2:Hg19::chr16:3014251..3014254,+#_90c4266bcb8406800c2648a0f0b014aap3@KREMEN2
5.56e-26FFCP PHASE1:Hg19::chr16:3014251..3014254,+#_90c4266bcb8406800c2648a0f0b014aap3@KREMEN2
6.73e-26FFCP PHASE1:Hg19::chr6:35048829..35048844,+#_05f007042ae190ce3980fe5d2c3cab15p@chr6:35048829..35048844, +
6.73e-26FFCP PHASE2:Hg19::chr6:35048829..35048844,+#_05f007042ae190ce3980fe5d2c3cab15p@chr6:35048829..35048844, +
7.14e-26FFCP PHASE2:Hg19::chr15:49255230..49255248,-#_7b7f64e649cbb09986661a2150d8181bp16@SHC4
7.14e-26FFCP PHASE1:Hg19::chr10:92617531..92617541,-#_7b7f64e649cbb09986661a2150d8181bp8@HTR7
7.14e-26FFCP PHASE2:Hg19::chr8:22932230..22932233,-#_7b7f64e649cbb09986661a2150d8181bp5@ENST00000520840, p5@ENST00000523806
7.14e-26FFCP PHASE2:Hg19::chr16:56368957..56368963,+#_7b7f64e649cbb09986661a2150d8181bp@chr16:56368957..56368963, +
7.14e-26FFCP PHASE2:Hg19::chr10:92617531..92617541,-#_7b7f64e649cbb09986661a2150d8181bp8@HTR7
7.14e-26FFCP PHASE1:Hg19::chr15:49255230..49255248,-#_7b7f64e649cbb09986661a2150d8181bp16@SHC4
7.14e-26FFCP PHASE1:Hg19::chr6:113369869..113369877,+#_7b7f64e649cbb09986661a2150d8181bp@chr6:113369869..113369877, +
7.14e-26FFCP PHASE2:Hg19::chr6:113369869..113369877,+#_7b7f64e649cbb09986661a2150d8181bp@chr6:113369869..113369877, +
7.14e-26FFCP PHASE1:Hg19::chr16:56368957..56368963,+#_7b7f64e649cbb09986661a2150d8181bp@chr16:56368957..56368963, +
7.14e-26FFCP PHASE1:Hg19::chr8:22932230..22932233,-#_7b7f64e649cbb09986661a2150d8181bp5@ENST00000520840, p5@ENST00000523806
8.66e-26FFCP PHASE1:Hg19::chr11:67463189..67463193,-#_33e979ffe87b42034aa3cc1923c4d5bap@chr11:67463189..67463193, -
8.66e-26FFCP PHASE2:Hg19::chr11:67463189..67463193,-#_33e979ffe87b42034aa3cc1923c4d5bap@chr11:67463189..67463193, -
1.0e-22FFCP PHASE2:Hg19::chr12:46897588..46897603,+#_bb502f79e233f9d3e49b78df5288009bp@chr12:46897588..46897603, +
1.0e-22FFCP PHASE1:Hg19::chr12:46897588..46897603,+#_bb502f79e233f9d3e49b78df5288009bp@chr12:46897588..46897603, +
1.12e-22FFCP PHASE2:Hg19::chr13:20934450..20934456,+#_41e65ff898f2da71f5b8121526c47bd0p@chr13:20934450..20934456, +
1.12e-22FFCP PHASE1:Hg19::chr13:20934450..20934456,+#_41e65ff898f2da71f5b8121526c47bd0p@chr13:20934450..20934456, +
1.25e-22FFCP PHASE1:Hg19::chr19:51538096..51538109,-#_7a82bd056f823de0129e29b42ee9f41dp5@KLK12
1.25e-22FFCP PHASE2:Hg19::chr19:51538096..51538109,-#_7a82bd056f823de0129e29b42ee9f41dp5@KLK12
5.17e-21FFCP PHASE1:Hg19::chr10:5529595..5529606,-#_4deb1bbb8e6abfba1059eb0fb1cd32e6p@chr10:5529595..5529606, -
5.17e-21FFCP PHASE2:Hg19::chr10:5529595..5529606,-#_4deb1bbb8e6abfba1059eb0fb1cd32e6p@chr10:5529595..5529606, -
7.74e-21FFCP PHASE1:Hg19::chr19:1249729..1249741,+#_69f8ddbac083e4b946254e244db21ad8p19@MIDN
7.74e-21FFCP PHASE2:Hg19::chr19:1249729..1249741,+#_69f8ddbac083e4b946254e244db21ad8p19@MIDN
1.15e-20FFCP PHASE1:Hg19::chr2:131669803..131669810,+#_dc7d9e66b08492e455383cc672f9157cp@chr2:131669803..131669810, +
1.15e-20FFCP PHASE2:Hg19::chr2:131669803..131669810,+#_dc7d9e66b08492e455383cc672f9157cp@chr2:131669803..131669810, +
1.28e-20FFCP PHASE1:Hg19::chr9:127212697..127212708,+#_6740eb9dd808b13fa59831b99e857f2bp@chr9:127212697..127212708, +
1.28e-20FFCP PHASE2:Hg19::chr9:127212697..127212708,+#_6740eb9dd808b13fa59831b99e857f2bp@chr9:127212697..127212708, +
1.56e-20FFCP PHASE1:Hg19::chr19:1905001..1905006,+#_83e48e8d0ae62862157c642135088431p11@SCAMP4
1.56e-20FFCP PHASE2:Hg19::chr19:1905001..1905006,+#_83e48e8d0ae62862157c642135088431p11@SCAMP4
1.9e-20FFCP PHASE2:Hg19::chr19:50709335..50709346,+#_13d1756e698b7ce896e2ab569cc022d4p@chr19:50709335..50709346, +
1.9e-20FFCP PHASE2:Hg19::chr15:72490099..72490109,-#_13d1756e698b7ce896e2ab569cc022d4p3@GRAMD2
1.9e-20FFCP PHASE1:Hg19::chr15:72490099..72490109,-#_13d1756e698b7ce896e2ab569cc022d4p3@GRAMD2
1.9e-20FFCP PHASE1:Hg19::chr19:50709335..50709346,+#_13d1756e698b7ce896e2ab569cc022d4p@chr19:50709335..50709346, +
2.76e-19FFCP PHASE1:Hg19::chr20:25176603..25176614,+#_e253a16b1ea445677dff38f736c1da2cp@chr20:25176603..25176614, +
2.76e-19FFCP PHASE2:Hg19::chr20:25176603..25176614,+#_e253a16b1ea445677dff38f736c1da2cp@chr20:25176603..25176614, +
6.77e-19FFCP PHASE1:Hg19::chr19:44306567..44306574,-#_73dec7b3626376f5eb800426c20f99cap7@LYPD5
6.77e-19FFCP PHASE2:Hg19::chr19:44306567..44306574,-#_73dec7b3626376f5eb800426c20f99cap7@LYPD5
8.88e-19FFCP PHASE2:Hg19::chr2:28853455..28853476,+#_7fc65f4d33e86c7a20a8c085e8c32fc5p@chr2:28853455..28853476, +
8.88e-19FFCP PHASE1:Hg19::chr2:28853455..28853476,+#_7fc65f4d33e86c7a20a8c085e8c32fc5p@chr2:28853455..28853476, +
9.72e-19FFCP PHASE1:Hg19::chr20:42816206..42816211,-#_2e6844ccfc71d246f5a347efe0f8f9e9p8@JPH2
9.72e-19FFCP PHASE1:Hg19::chr19:51538121..51538134,-#_2e6844ccfc71d246f5a347efe0f8f9e9p4@KLK12
9.72e-19FFCP PHASE2:Hg19::chr20:42816206..42816211,-#_2e6844ccfc71d246f5a347efe0f8f9e9p8@JPH2
9.72e-19FFCP PHASE2:Hg19::chr19:51538121..51538134,-#_2e6844ccfc71d246f5a347efe0f8f9e9p4@KLK12
8.69e-18FFCP PHASE2:Hg19::chr6:151770193..151770196,-#_53ee90a450f57a81c7c38bf832b6ee92p@chr6:151770193..151770196, -
8.69e-18FFCP PHASE2:Hg19::chr3:124535316..124535340,+#_53ee90a450f57a81c7c38bf832b6ee92p@chr3:124535316..124535340, +
8.69e-18FFCP PHASE1:Hg19::chr5:59064162..59064173,-#_53ee90a450f57a81c7c38bf832b6ee92p72@PDE4D
8.69e-18FFCP PHASE1:Hg19::chr1:44820685..44820695,-#_53ee90a450f57a81c7c38bf832b6ee92p10@ERI3
8.69e-18FFCP PHASE2:Hg19::chr5:59064162..59064173,-#_53ee90a450f57a81c7c38bf832b6ee92p72@PDE4D
8.69e-18FFCP PHASE1:Hg19::chr21:47410794..47410799,+#_53ee90a450f57a81c7c38bf832b6ee92p@chr21:47410794..47410799, +
8.69e-18FFCP PHASE2:Hg19::chr1:44820685..44820695,-#_53ee90a450f57a81c7c38bf832b6ee92p10@ERI3
8.69e-18FFCP PHASE1:Hg19::chr6:151770193..151770196,-#_53ee90a450f57a81c7c38bf832b6ee92p@chr6:151770193..151770196, -
8.69e-18FFCP PHASE2:Hg19::chr21:47410794..47410799,+#_53ee90a450f57a81c7c38bf832b6ee92p@chr21:47410794..47410799, +
8.69e-18FFCP PHASE1:Hg19::chr3:124535316..124535340,+#_53ee90a450f57a81c7c38bf832b6ee92p@chr3:124535316..124535340, +
1.03e-17FFCP PHASE2:Hg19::chr1:9970194..9970195,-#_03c7e4f3fe12fd80c8d31250333075e7p14@CTNNBIP1
1.03e-17FFCP PHASE1:Hg19::chr5:79375654..79375674,+#_03c7e4f3fe12fd80c8d31250333075e7p@chr5:79375654..79375674, +
1.03e-17FFCP PHASE1:Hg19::chr2:25383828..25383855,-#_03c7e4f3fe12fd80c8d31250333075e7p4@POMC
1.03e-17FFCP PHASE2:Hg19::chr5:79375654..79375674,+#_03c7e4f3fe12fd80c8d31250333075e7p@chr5:79375654..79375674, +
1.03e-17FFCP PHASE1:Hg19::chr15:101459410..101459421,-#_03c7e4f3fe12fd80c8d31250333075e7p2@ENST00000560068
1.03e-17FFCP PHASE1:Hg19::chr10:74020629..74020634,-#_03c7e4f3fe12fd80c8d31250333075e7p@chr10:74020629..74020634, -
1.03e-17FFCP PHASE2:Hg19::chr2:25383828..25383855,-#_03c7e4f3fe12fd80c8d31250333075e7p4@POMC
1.03e-17FFCP PHASE1:Hg19::chr10:43133595..43133606,-#_03c7e4f3fe12fd80c8d31250333075e7p@chr10:43133595..43133606, -
1.03e-17FFCP PHASE2:Hg19::chr10:74020629..74020634,-#_03c7e4f3fe12fd80c8d31250333075e7p@chr10:74020629..74020634, -
1.03e-17FFCP PHASE1:Hg19::chr11:65265332..65265342,+#_03c7e4f3fe12fd80c8d31250333075e7p19@MALAT1
1.03e-17FFCP PHASE2:Hg19::chr10:43133595..43133606,-#_03c7e4f3fe12fd80c8d31250333075e7p@chr10:43133595..43133606, -
1.03e-17FFCP PHASE2:Hg19::chr11:65265332..65265342,+#_03c7e4f3fe12fd80c8d31250333075e7p19@MALAT1
1.03e-17FFCP PHASE1:Hg19::chr1:9970194..9970195,-#_03c7e4f3fe12fd80c8d31250333075e7p14@CTNNBIP1
1.03e-17FFCP PHASE2:Hg19::chr15:101459410..101459421,-#_03c7e4f3fe12fd80c8d31250333075e7p2@ENST00000560068
2.59e-17FFCP PHASE2:Hg19::chr11:119039069..119039081,+#_518f97610ac239a23c3b31a7f443265cp9@NLRX1
2.59e-17FFCP PHASE1:Hg19::chr11:119039069..119039081,+#_518f97610ac239a23c3b31a7f443265cp9@NLRX1
2.09e-16FFCP PHASE2:Hg19::chr12:48164812..48164829,-#_0bb090b540e5ce2eb47a5b679fa2f7eap14@RAPGEF3
2.09e-16FFCP PHASE1:Hg19::chr12:48164812..48164829,-#_0bb090b540e5ce2eb47a5b679fa2f7eap14@RAPGEF3
2.64e-16FFCP PHASE1:Hg19::chr2:131669791..131669801,+#_ae7ad33367442dfe905db53700349d34p@chr2:131669791..131669801, +
2.64e-16FFCP PHASE2:Hg19::chr2:131669791..131669801,+#_ae7ad33367442dfe905db53700349d34p@chr2:131669791..131669801, +
3.32e-16FFCP PHASE2:Hg19::chr17:39742822..39742850,+#_4542b62f360c74fa04dc23e73eea0b10p@chr17:39742822..39742850, +
3.32e-16FFCP PHASE1:Hg19::chr17:39742822..39742850,+#_4542b62f360c74fa04dc23e73eea0b10p@chr17:39742822..39742850, +
3.59e-16FFCP PHASE1:Hg19::chr1:3591362..3591369,-#_cd29b053f71c9c800d4c3c757f5590cep@chr1:3591362..3591369, -
3.59e-16FFCP PHASE2:Hg19::chr1:3591362..3591369,-#_cd29b053f71c9c800d4c3c757f5590cep@chr1:3591362..3591369, -

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