UBERON:0005863: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=cartilaginous condensation | |name=cartilaginous condensation | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0004288 | |part_of=UBERON:0004288 | ||
Latest revision as of 17:55, 12 September 2014
| Name: | cartilaginous condensation | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Cell condensation that is an aggregation of mesenchymal cells that are committed to differentiate into chondroblasts and chondrocytes." [GO:curator] | ||
| Xrefs: |
| ||
| Synonyms: |
"cartilage condensation" EXACT [EMAPA:25353] "cartilagenous condensation" EXACT [EHDAA2:0003147] "chondrogenic condensation" EXACT [VSAO:0000092] | ||
| Comments: | AO notes: isa cell condensation in VSAO |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005856(developing mesenchymal condensation) |
|---|---|
| develops_from: | UBERON:0005866(pre-cartilage condensation) |
| part_of: | UBERON:0004288(skeleton) |
Children
| is a: | UBERON:0010351 (otic capsule cartilage condensation),UBERON:0010881 (limb cartilage element),UBERON:0011094 (vertebra cartilage element) |
|---|---|
| develops from: | UBERON:0002513 (endochondral bone),UBERON:0007844 (cartilage element) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005863 (cartilaginous condensation), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.25e-162 | FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_d3c8c30b8bf80c9ac74da813d90d359c | p@chr3:174737010..174737023, + |
| 1.25e-162 | FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_d3c8c30b8bf80c9ac74da813d90d359c | p@chr3:174737010..174737023, + |
| 3.92e-140 | FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_7b278fa28041caa733042d81e873a948 | p4@PAX1 |
| 3.92e-140 | FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_7b278fa28041caa733042d81e873a948 | p4@PAX1 |
| 4.22e-99 | FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_7e67bccfb0785d4bb13ac20fc92050e4 | p@chr5:30104176..30104187, - |
| 4.22e-99 | FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_7e67bccfb0785d4bb13ac20fc92050e4 | p@chr5:30104176..30104187, - |
| 1.06e-78 | FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_262f9266e3fade3754a6a775e95b2cb1 | p4@NKX3-2 |
| 1.06e-78 | FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_262f9266e3fade3754a6a775e95b2cb1 | p4@NKX3-2 |
| 2.52e-71 | FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_4423d26b775016a12c87a4310aa8f7fb | p@chr9:114135497..114135526, - |
| 2.52e-71 | FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_4423d26b775016a12c87a4310aa8f7fb | p@chr9:114135497..114135526, - |
| 7.4e-71 | FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_3bfbcd3ba829224721796d41667629e8 | p@chr2:241897125..241897142, - |
| 7.4e-71 | FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_3bfbcd3ba829224721796d41667629e8 | p@chr2:241897125..241897142, - |
| 6.33e-70 | FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_22ceb83214f1164104aeaca35ee9bc3e | p@chr3:80727046..80727051, - |
| 6.33e-70 | FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_22ceb83214f1164104aeaca35ee9bc3e | p@chr3:80727046..80727051, - |
| 4.8e-67 | FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_3916daa5a898784f919375156213602d | p15@SNED1 |
| 4.8e-67 | FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_3916daa5a898784f919375156213602d | p15@SNED1 |
| 1.24e-66 | FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_039d6c907fde5b9c31d545b8af88a554 | p20@CAPZB |
| 1.24e-66 | FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_039d6c907fde5b9c31d545b8af88a554 | p20@CAPZB |
| 1.26e-62 | FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_752bc986377142cf48f5751902bc8ad0 | p@chr1:19778678..19778689, - |
| 1.26e-62 | FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_752bc986377142cf48f5751902bc8ad0 | p@chr1:19778678..19778689, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_7db2883ae2da6e5f51efe5ff655e9cba | p@chr2:241897189..241897221, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_7db2883ae2da6e5f51efe5ff655e9cba | p@chr2:241897189..241897221, - |
| 1.55e-57 | FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_1049fbea4fdb7b22baac6f5ca4f978a3 | p1@uc010aki.1 |
| 1.55e-57 | FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_1049fbea4fdb7b22baac6f5ca4f978a3 | p1@uc010aki.1 |
| 4.09e-56 | FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_43d20653698668bf10020e2e46cfe629 | p6@SIX4 |
| 4.09e-56 | FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_43d20653698668bf10020e2e46cfe629 | p6@SIX4 |
| 3.74e-53 | FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_64cb10fd11653a1b3b804e30c52ac9bc | p3@uc010aki.1 |
| 3.74e-53 | FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_64cb10fd11653a1b3b804e30c52ac9bc | p3@uc010aki.1 |
| 1.15e-51 | FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_7d2d430c8aea822d71775024cde64828 | p3@PAX1 |
| 1.15e-51 | FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_7d2d430c8aea822d71775024cde64828 | p3@PAX1 |
| 2.3e-51 | FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_91bb17c555e47d4b9f01cdaf7a81344f | p@chr10:81923378..81923389, - |
| 2.3e-51 | FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_91bb17c555e47d4b9f01cdaf7a81344f | p@chr10:81923378..81923389, - |
| 3.24e-51 | FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_92c561294825e2aa8c67c44e76ad79b6 | p@chr2:12248310..12248334, - |
| 3.24e-51 | FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_92c561294825e2aa8c67c44e76ad79b6 | p@chr2:12248310..12248334, - |
| 8.0e-51 | FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_aeee3ce09e52d405fda1bc968ec0e4f3 | p19@HDAC9 |
| 8.0e-51 | FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_aeee3ce09e52d405fda1bc968ec0e4f3 | p19@HDAC9 |
| 5.06e-49 | FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_188e4c8a5667181c923379c12fd5df9a | p@chr7:158224707..158224729, - |
| 5.06e-49 | FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_188e4c8a5667181c923379c12fd5df9a | p@chr7:158224707..158224729, - |
| 5.24e-48 | FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_9fe1af5f9ec82762373521ced50647ae | p@chr1:65888177..65888194, + |
| 5.24e-48 | FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_9fe1af5f9ec82762373521ced50647ae | p@chr1:65888177..65888194, + |
| 2.98e-45 | FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_278dc525c4a64d017c9ef011c9d6de03 | p3@NKX3-2 |
| 2.98e-45 | FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_278dc525c4a64d017c9ef011c9d6de03 | p3@NKX3-2 |
| 2.92e-44 | FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_fbd69ef9c27e0529e7f0b06813030f8a | p1@MGC27382 |
| 2.92e-44 | FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_fbd69ef9c27e0529e7f0b06813030f8a | p1@MGC27382 |
| 5.38e-44 | FFCP PHASE1:Mm9::chr1:24217213..24217226,+#_97e3998b0bc149bdc348b4f23eac95b1 | p@chr1:24217213..24217226, + |
| 5.38e-44 | FFCP PHASE2:Mm9::chr1:24217213..24217226,+#_97e3998b0bc149bdc348b4f23eac95b1 | p@chr1:24217213..24217226, + |
| 1.71e-43 | FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_a6b87134b1e96d85ea5ab4ad74b8ec96 | p18@HDAC9 |
| 1.71e-43 | FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_a6b87134b1e96d85ea5ab4ad74b8ec96 | p18@HDAC9 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_e1bcf2662554f5b39e147f41f863d866 | p@chr13:24914614..24914622, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_e1bcf2662554f5b39e147f41f863d866 | p@chr9:33028063..33028067, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_e1bcf2662554f5b39e147f41f863d866 | p@chr13:24914614..24914622, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_e1bcf2662554f5b39e147f41f863d866 | p@chr9:33028063..33028067, - |
| 1.64e-40 | FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_ce08d5b3c4f33d8752171bc87df3fe99 | p1@PAX1 |
| 1.64e-40 | FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_ce08d5b3c4f33d8752171bc87df3fe99 | p1@PAX1 |
| 1.81e-40 | FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_24fbf37be4e68b2fb22aacbb81b42819 | p5@PTGFR |
| 1.81e-40 | FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_24fbf37be4e68b2fb22aacbb81b42819 | p5@PTGFR |
| 2.13e-40 | FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_f53fa37e227e869dd795cf1d39638ec0 | p@chr2:241897363..241897398, + |
| 2.13e-40 | FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_f53fa37e227e869dd795cf1d39638ec0 | p@chr2:241897363..241897398, + |
| 3.04e-39 | FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_dc556991370b8d5316a95c20b2e09be2 | p2@PAX1 |
| 3.04e-39 | FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_dc556991370b8d5316a95c20b2e09be2 | p2@PAX1 |
| 7.19e-39 | FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_fcec2bbbca5207018168b8e174bac8b8 | p@chr5:140887761..140887777, + |
| 7.19e-39 | FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_fcec2bbbca5207018168b8e174bac8b8 | p16@HDAC9 |
| 7.19e-39 | FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_fcec2bbbca5207018168b8e174bac8b8 | p@chr5:140887761..140887777, + |
| 7.19e-39 | FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_fcec2bbbca5207018168b8e174bac8b8 | p16@HDAC9 |
| 1.24e-38 | FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_703d77471582c357ded608e4285e6bd8 | p4@NUP54 |
| 1.24e-38 | FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_703d77471582c357ded608e4285e6bd8 | p4@NUP54 |
| 2.08e-38 | FFCP PHASE2:Hg19::chr2:241938405..241938416,+#_b1b30ef4752dc53b1f2bb2158121a3ec | p@chr2:241938405..241938416, + |
| 2.08e-38 | FFCP PHASE1:Hg19::chr2:241938405..241938416,+#_b1b30ef4752dc53b1f2bb2158121a3ec | p@chr2:241938405..241938416, + |
| 3.34e-38 | FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_26ced0669f3353ddf99cae2b18f776e7 | p1@NKX3-2 |
| 3.34e-38 | FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_26ced0669f3353ddf99cae2b18f776e7 | p1@NKX3-2 |
| 3.68e-38 | FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_4b1af4da4e0ff2b0c76aed388ee85cb6 | p10@SYNJ2 |
| 3.68e-38 | FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_4b1af4da4e0ff2b0c76aed388ee85cb6 | p10@SYNJ2 |
| 5.39e-38 | FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_5a3b5ff82901d2b178a611c6c17c4c56 | p@chr9:16138889..16138902, - |
| 5.39e-38 | FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_5a3b5ff82901d2b178a611c6c17c4c56 | p@chr9:16138889..16138902, - |
| 8.66e-38 | FFCP PHASE1:Hg19::chr8:78311303..78311320,+#_59aba099424ccde806ce77b577853d79 | p2@ENST00000518706 |
| 8.66e-38 | FFCP PHASE2:Hg19::chr8:78311303..78311320,+#_59aba099424ccde806ce77b577853d79 | p2@ENST00000518706 |
| 2.96e-37 | FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_2cada9de0c09aca578c0503a48712aae | p1@ENST00000436845 |
| 2.96e-37 | FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_2cada9de0c09aca578c0503a48712aae | p1@ENST00000436845 |
| 6.92e-37 | FFCP PHASE1:Hg19::chr9:123239747..123239765,-#_3565843cc6b81f98d202b4da9a20c295 | p12@CDK5RAP2 |
| 6.92e-37 | FFCP PHASE2:Hg19::chr9:123239747..123239765,-#_3565843cc6b81f98d202b4da9a20c295 | p12@CDK5RAP2 |
| 3.28e-36 | FFCP PHASE2:Hg19::chr1:78695298..78695311,+#_4cd9cf5d35369d77e3ad4eddd4549418 | p1@ENST00000413519 |
| 3.28e-36 | FFCP PHASE1:Hg19::chr1:78695298..78695311,+#_4cd9cf5d35369d77e3ad4eddd4549418 | p1@ENST00000413519 |
| 9.62e-35 | FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_59085aef698c0b3faed92227b966394c | p4@PAX9 |
| 9.62e-35 | FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_59085aef698c0b3faed92227b966394c | p4@PAX9 |
| 1.8e-34 | FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_bf44bb90686d707320f9fd8a89ba302d | p@chr7:100202784..100202796, - |
| 1.8e-34 | FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_bf44bb90686d707320f9fd8a89ba302d | p@chr7:100202784..100202796, - |
| 3.69e-34 | FFCP PHASE2:Hg19::chr12:54422268..54422278,+#_4d5a54f14c7e21f8d9564a612195048b | p8@HOXC6 |
| 3.69e-34 | FFCP PHASE1:Hg19::chr12:54422268..54422278,+#_4d5a54f14c7e21f8d9564a612195048b | p8@HOXC6 |
| 5.52e-34 | FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_1cd72b56f4dfd8ed83b6cc8e299a5d9a | p6@CCDC86 |
| 5.52e-34 | FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_1cd72b56f4dfd8ed83b6cc8e299a5d9a | p6@CCDC86 |
| 1.43e-33 | FFCP PHASE1:Hg19::chr20:21695435..21695452,+#_6b0ea815dac95610cdafeac87c8ad7a9 | p@chr20:21695435..21695452, + |
| 1.43e-33 | FFCP PHASE2:Hg19::chr20:21695435..21695452,+#_6b0ea815dac95610cdafeac87c8ad7a9 | p@chr20:21695435..21695452, + |
| 2.03e-33 | FFCP PHASE1:Mm9::chr15:78817557..78817567,+#_0026351f073251eb89828f43c84d7e04 | p@chr15:78817557..78817567, + |
| 2.03e-33 | FFCP PHASE2:Mm9::chr15:78817557..78817567,+#_0026351f073251eb89828f43c84d7e04 | p@chr15:78817557..78817567, + |
| 3.37e-33 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_9788a2a8760ddf7fae167e24330f985d | p26@Myo18a |
| 3.37e-33 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_9788a2a8760ddf7fae167e24330f985d | p26@Myo18a |
| 4.33e-33 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_76fb9ca9ca9a088054ee18f3ddc66009 | p@chr8:75097542..75097549, + |
| 4.33e-33 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_76fb9ca9ca9a088054ee18f3ddc66009 | p@chr9:21934585..21934591, - |
| 4.33e-33 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_76fb9ca9ca9a088054ee18f3ddc66009 | p@chr8:75097542..75097549, + |
| 4.33e-33 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_76fb9ca9ca9a088054ee18f3ddc66009 | p@chr2:32482372..32482381, + |
