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{{UBERON
{{UBERON
|id=UBERON:0006238
|name=future brain
|namespace=
|def=
|xref=EFO:0003431;;EHDAA:300;;EHDAA:830;;EMAPA:16089;;EMAPA:16471;;RETIRED_EHDAA2:0000591;;ZFA:0000146
|is_a=UBERON:0005423
|synonym="presumptive brain" EXACT [ZFA:0000146]
|comment=obsoleted in EHDAA2
|alt_id=
|alt_id=
|disjoint_from=
|comment=Usage notes: this covers a variety of structures across Metazoa
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=emapa_ehdaa2;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0006238
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0000922
|name=future brain
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002346
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=emapa_ehdaa2;;vertebrate_core
|preceded_by=
|synonym="presumptive brain" EXACT [ZFA:0000146]
|union_of=
|xref=EFO:0003431;;EHDAA:300;;EHDAA:830;;EMAPA:16089;;EMAPA:16471;;RETIRED_EHDAA2:0000591;;TAO:0000146;;ZFA:0000146
}}
}}

Latest revision as of 17:56, 12 September 2014

Name:future brain
Namespace:FANTOM
Xrefs:
links:

EFO:0003431
EHDAA:300
EHDAA:830
EMAPA:16089
EMAPA:16471
RETIRED_EHDAA2:0000591
TAO:0000146

ZFA:0000146
Synonyms: "presumptive brain" EXACT [ZFA:0000146]
Comments:Usage notes: this covers a variety of structures across Metazoa
Subset: emapa_ehdaa2
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
part_of:UBERON:0002346(neurectoderm)



Children

develops from:UBERON:0000955 (brain)
part of:UBERON:0006240 (future forebrain),UBERON:0007277 (presumptive hindbrain),UBERON:0009616 (presumptive midbrain)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006238 (future brain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.26e-114FFCP PHASE1:Hg19::chr12:106976678..106976708,+#_ef1d82cfa5d40e9452e29057ee1b397fp2@RFX4
1.26e-114FFCP PHASE2:Hg19::chr12:106976678..106976708,+#_ef1d82cfa5d40e9452e29057ee1b397fp2@RFX4
2.46e-114FFCP PHASE1:Hg19::chr4:46126063..46126087,-#_16ef0fe9d823c21e100d20ffd9dde368p2@GABRG1
2.46e-114FFCP PHASE2:Hg19::chr4:46126063..46126087,-#_16ef0fe9d823c21e100d20ffd9dde368p2@GABRG1
2.74e-114FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_8668576a8e4444c05d40b8c162907bdep3@CTNND2
2.74e-114FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_8668576a8e4444c05d40b8c162907bdep3@CTNND2
5.46e-112FFCP PHASE2:Hg19::chr17:68101117..68101162,+#_a5cb86fb28a48678808093f73b8d68d8p2@KCNJ16
5.46e-112FFCP PHASE1:Hg19::chr17:68101117..68101162,+#_a5cb86fb28a48678808093f73b8d68d8p2@KCNJ16
2.24e-111FFCP PHASE1:Hg19::chr1:110082487..110082535,+#_83e565f66b837b23d0b42c63b9b8092cp1@GPR61
2.24e-111FFCP PHASE2:Hg19::chr1:110082487..110082535,+#_83e565f66b837b23d0b42c63b9b8092cp1@GPR61
2.54e-111FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_5971f0368608f49d376d596a3b128af8p5@ST8SIA3
2.54e-111FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_5971f0368608f49d376d596a3b128af8p5@ST8SIA3
1.06e-110FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_f60598065d357ffeb697e840ba402938p1@ENST00000412957
1.06e-110FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_f60598065d357ffeb697e840ba402938p1@ENST00000412957
1.37e-110FFCP PHASE2:Hg19::chr12:106976774..106976788,+#_cc44fd119b321448b9ee0d5183878176p1@RFX4
1.37e-110FFCP PHASE1:Hg19::chr12:106976774..106976788,+#_cc44fd119b321448b9ee0d5183878176p1@RFX4
2.94e-110FFCP PHASE2:Hg19::chr9:87283501..87283520,+#_5caa2125c172a0e7d91f2cc3bf527682p17@NTRK2
2.94e-110FFCP PHASE1:Hg19::chr9:87283501..87283520,+#_5caa2125c172a0e7d91f2cc3bf527682p17@NTRK2
7.73e-110FFCP PHASE2:Hg19::chr12:106976656..106976672,+#_795768af4e2e96cafff151b06a2969b0p4@RFX4
7.73e-110FFCP PHASE1:Hg19::chr12:106976656..106976672,+#_795768af4e2e96cafff151b06a2969b0p4@RFX4
1.08e-109FFCP PHASE1:Hg19::chr14:24047772..24047790,-#_0419f5941f9bd7375ea8fe55f67d579bp6@JPH4
1.08e-109FFCP PHASE2:Hg19::chr14:24047772..24047790,-#_0419f5941f9bd7375ea8fe55f67d579bp6@JPH4
1.56e-109FFCP PHASE1:Hg19::chr2:50201220..50201261,-#_53d7c3da37094f8cfaad56660e349eafp3@NRXN1
1.56e-109FFCP PHASE2:Hg19::chr2:50201220..50201261,-#_53d7c3da37094f8cfaad56660e349eafp3@NRXN1
3.69e-109FFCP PHASE1:Hg19::chr8:145560111..145560165,-#_7b91442865a3c13ba1a4879c8fe66db3p2@SCRT1
3.69e-109FFCP PHASE2:Hg19::chr8:145560111..145560165,-#_7b91442865a3c13ba1a4879c8fe66db3p2@SCRT1
7.38e-109FFCP PHASE2:Hg19::chr2:74612614..74612643,+#_82c261dff1a0bead0588b9a4ce919943p1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
7.38e-109FFCP PHASE1:Hg19::chr2:74612614..74612643,+#_82c261dff1a0bead0588b9a4ce919943p1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
9.84e-109FFCP PHASE1:Hg19::chr5:161275118..161275138,+#_23127e57781be9d8905700d14665cc24p3@GABRA1
9.84e-109FFCP PHASE2:Hg19::chr5:161275118..161275138,+#_23127e57781be9d8905700d14665cc24p3@GABRA1
1.63e-108FFCP PHASE2:Hg19::chr2:73286253..73286279,-#_3cb6d8631d9e886a2028b76b9b9afd98p3@SFXN5
1.63e-108FFCP PHASE1:Hg19::chr2:73286253..73286279,-#_3cb6d8631d9e886a2028b76b9b9afd98p3@SFXN5
2.13e-108FFCP PHASE1:Hg19::chr11:83984302..83984330,-#_63b1573da99eff4240eef556155b7274p2@DLG2
2.13e-108FFCP PHASE2:Hg19::chr11:83984302..83984330,-#_63b1573da99eff4240eef556155b7274p2@DLG2
4.2e-108FFCP PHASE1:Hg19::chr4:46126093..46126106,-#_3c5388a593d39fe1aa193dbf91527977p3@GABRG1
4.2e-108FFCP PHASE2:Hg19::chr4:46126093..46126106,-#_3c5388a593d39fe1aa193dbf91527977p3@GABRG1
4.37e-108FFCP PHASE2:Hg19::chr7:47420733..47420758,-#_74646ebd81ab06bbaab857e8dd5ed846p@chr7:47420733..47420758, -
4.37e-108FFCP PHASE1:Hg19::chr7:47420733..47420758,-#_74646ebd81ab06bbaab857e8dd5ed846p@chr7:47420733..47420758, -
5.22e-108FFCP PHASE2:Hg19::chr3:167452969..167453019,+#_81771dd554f87178e7d44aab37a50747p2@SERPINI1
5.22e-108FFCP PHASE1:Hg19::chr3:167452969..167453019,+#_81771dd554f87178e7d44aab37a50747p2@SERPINI1
5.23e-108FFCP PHASE2:Hg19::chr5:112074041..112074101,+#_628515d2d8141558a9d64d86c5ab74a1p4@APC
5.23e-108FFCP PHASE1:Hg19::chr5:112074041..112074101,+#_628515d2d8141558a9d64d86c5ab74a1p4@APC
5.65e-108FFCP PHASE2:Hg19::chr5:11384884..11384916,-#_eb2d0ee6fc84cf1e6b4636984e710db5p8@CTNND2
5.65e-108FFCP PHASE1:Hg19::chr5:11384884..11384916,-#_eb2d0ee6fc84cf1e6b4636984e710db5p8@CTNND2
1.1e-107FFCP PHASE1:Hg19::chr4:46126009..46126045,-#_42d7a300fcee3e9bc804ccfc99012352p1@GABRG1
1.1e-107FFCP PHASE2:Hg19::chr4:46126009..46126045,-#_42d7a300fcee3e9bc804ccfc99012352p1@GABRG1
1.41e-107FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_aa9dde86e2b10601730d6553f1915d5fp6@GPM6B
1.41e-107FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_aa9dde86e2b10601730d6553f1915d5fp6@GPM6B
1.62e-107FFCP PHASE1:Hg19::chr6:56716896..56716928,-#_5f1fb2c0b48960e56a33fccb757c85efp8@DST
1.62e-107FFCP PHASE2:Hg19::chr6:56716896..56716928,-#_5f1fb2c0b48960e56a33fccb757c85efp8@DST
2.6e-107FFCP PHASE2:Hg19::chr18:32398296..32398318,+#_2e6e4c2bac51ecd53ab45f0586ca2976p7@DTNA
2.6e-107FFCP PHASE1:Hg19::chr18:32398296..32398318,+#_2e6e4c2bac51ecd53ab45f0586ca2976p7@DTNA
4.0e-107FFCP PHASE2:Hg19::chr7:98467524..98467537,-#_79361f6c4e9365c186c49f53e8b96777p3@TMEM130
4.0e-107FFCP PHASE1:Hg19::chr7:98467524..98467537,-#_79361f6c4e9365c186c49f53e8b96777p3@TMEM130
5.57e-107FFCP PHASE1:Hg19::chr17:36760961..36760976,-#_20a9ff88e6a2ac81575b7f5b66ebf466p2@SRCIN1
5.57e-107FFCP PHASE2:Hg19::chr17:36760961..36760976,-#_20a9ff88e6a2ac81575b7f5b66ebf466p2@SRCIN1
5.63e-107FFCP PHASE2:Hg19::chr15:79576178..79576222,-#_07ff712303d6e15c141243d0b7654b02p1@ENST00000559225, p1@ENST00000559979, p1@ENST00000560533
5.63e-107FFCP PHASE1:Hg19::chr15:79576178..79576222,-#_07ff712303d6e15c141243d0b7654b02p1@ENST00000559225, p1@ENST00000559979, p1@ENST00000560533
5.94e-107FFCP PHASE1:Hg19::chr7:14943271..14943288,-#_a7b3e95a7460e5ebe45394f83f4c85f0p3@DGKB
5.94e-107FFCP PHASE2:Hg19::chr7:14943271..14943288,-#_a7b3e95a7460e5ebe45394f83f4c85f0p3@DGKB
7.46e-107FFCP PHASE2:Hg19::chr17:54230819..54230848,+#_a09297a5f0f7646a3905c11be2ebed61p1@ANKFN1
7.46e-107FFCP PHASE1:Hg19::chr17:54230819..54230848,+#_a09297a5f0f7646a3905c11be2ebed61p1@ANKFN1
1.58e-106FFCP PHASE1:Hg19::chr1:156217805..156217817,-#_a2a73c62d4e02a25ba473196223a2278p2@PAQR6
1.58e-106FFCP PHASE2:Hg19::chr1:156217805..156217817,-#_a2a73c62d4e02a25ba473196223a2278p2@PAQR6
1.61e-106FFCP PHASE2:Hg19::chr2:210636266..210636306,+#_47f503f20d9af154d0dccb74b69cd362p4@UNC80
1.61e-106FFCP PHASE1:Hg19::chr2:210636266..210636306,+#_47f503f20d9af154d0dccb74b69cd362p4@UNC80
2.35e-106FFCP PHASE1:Hg19::chr12:99548496..99548518,-#_6431c40efae781d3d51b51e0b0603007p3@ANKS1B
2.35e-106FFCP PHASE2:Hg19::chr12:99548496..99548518,-#_6431c40efae781d3d51b51e0b0603007p3@ANKS1B
3.68e-106FFCP PHASE2:Hg19::chr1:84630574..84630602,+#_d7fabfc1b25e6d3b9603707b35994333p9@PRKACB
3.68e-106FFCP PHASE1:Hg19::chr1:84630574..84630602,+#_d7fabfc1b25e6d3b9603707b35994333p9@PRKACB
4.29e-106FFCP PHASE1:Hg19::chr8:9763167..9763180,-#_7fb5068702aed65862a0f4f4644d7c39p6@ENST00000521242
4.29e-106FFCP PHASE2:Hg19::chr8:9763167..9763180,-#_7fb5068702aed65862a0f4f4644d7c39p6@ENST00000521242
4.66e-106FFCP PHASE2:Hg19::chr5:87437100..87437115,-#_96664d8b46151ec9645c0749096cfc8ep1@LOC100289347
4.66e-106FFCP PHASE1:Hg19::chr5:87437100..87437115,-#_96664d8b46151ec9645c0749096cfc8ep1@LOC100289347
4.78e-106FFCP PHASE2:Hg19::chr12:22562202..22562222,+#_64e21c773ad3fc6b8b3d847ef70adda6p@chr12:22562202..22562222, +
4.78e-106FFCP PHASE1:Hg19::chr12:22562202..22562222,+#_64e21c773ad3fc6b8b3d847ef70adda6p@chr12:22562202..22562222, +
2.35e-105FFCP PHASE1:Hg19::chr17:7560542..7560578,+#_f98e8a8572a767c54b5cf2383a5b26fbp4@ATP1B2
2.35e-105FFCP PHASE2:Hg19::chr17:7560542..7560578,+#_f98e8a8572a767c54b5cf2383a5b26fbp4@ATP1B2
2.56e-105FFCP PHASE1:Hg19::chr7:4998802..4998861,-#_0bfa8746695fcc471f0851c6106ff680p1@MMD2
2.56e-105FFCP PHASE2:Hg19::chr7:4998802..4998861,-#_0bfa8746695fcc471f0851c6106ff680p1@MMD2
4.86e-105FFCP PHASE1:Hg19::chr5:11386115..11386130,-#_af6d399e5609f7278431c43423354ba8p2@CTNND2
4.86e-105FFCP PHASE2:Hg19::chr5:11386115..11386130,-#_af6d399e5609f7278431c43423354ba8p2@CTNND2
4.99e-105FFCP PHASE2:Hg19::chr11:35441048..35441059,-#_643b309d4e493d696d2d13fc46e089cfp4@SLC1A2
4.99e-105FFCP PHASE1:Hg19::chr11:35441048..35441059,-#_643b309d4e493d696d2d13fc46e089cfp4@SLC1A2
5.65e-105FFCP PHASE2:Hg19::chr17:11973062..11973087,+#_c2077352bb01756b3157d61cc15e512dp4@MAP2K4
5.65e-105FFCP PHASE2:Hg19::chr2:131721216..131721304,+#_c2077352bb01756b3157d61cc15e512dp@chr2:131721216..131721304, +
5.65e-105FFCP PHASE1:Hg19::chr17:11973062..11973087,+#_c2077352bb01756b3157d61cc15e512dp4@MAP2K4
5.65e-105FFCP PHASE1:Hg19::chr2:131721216..131721304,+#_c2077352bb01756b3157d61cc15e512dp@chr2:131721216..131721304, +
6.52e-105FFCP PHASE2:Hg19::chr2:210526233..210526258,+#_04e2adda546af1b1c81a22ef91d341fdp9@MAP2
6.52e-105FFCP PHASE1:Hg19::chr2:210526233..210526258,+#_04e2adda546af1b1c81a22ef91d341fdp9@MAP2
6.71e-105FFCP PHASE1:Hg19::chr7:154002286..154002307,+#_7f4d33c65d25938452b8028365709828p3@DPP6
6.71e-105FFCP PHASE2:Hg19::chr7:154002286..154002307,+#_7f4d33c65d25938452b8028365709828p3@DPP6
7.56e-105FFCP PHASE1:Hg19::chr1:84630610..84630621,+#_f3ca26b69a80922a5586f945359dba47p17@PRKACB
7.56e-105FFCP PHASE2:Hg19::chr1:84630610..84630621,+#_f3ca26b69a80922a5586f945359dba47p17@PRKACB
1.28e-104FFCP PHASE1:Hg19::chr7:36446001..36446028,+#_4770c73f0c6347b533be04914a145553p4@ANLN
1.28e-104FFCP PHASE2:Hg19::chr7:36446001..36446028,+#_4770c73f0c6347b533be04914a145553p4@ANLN
1.32e-104FFCP PHASE1:Hg19::chr12:102060419..102060444,+#_6300f919fe6ae5bd4ad3e73b2f1c29f5p2@MYBPC1
1.32e-104FFCP PHASE2:Hg19::chr12:102060419..102060444,+#_6300f919fe6ae5bd4ad3e73b2f1c29f5p2@MYBPC1
1.56e-104FFCP PHASE2:Hg19::chr1:2005182..2005194,+#_07f13404a3bd59c9e80ec7f5e87e7e46p8@PRKCZ
1.56e-104FFCP PHASE1:Hg19::chr1:2005182..2005194,+#_07f13404a3bd59c9e80ec7f5e87e7e46p8@PRKCZ

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