Personal tools

UBERON:0006240: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0006240
|alt_id=
|name=future forebrain
|namespace=
|def=
|xref=EFO:0003423;;EHDAA2:0000661;;EHDAA:2643;;EMAPA:16640;;TAO:0000062;;ZFA:0000062
|is_a=UBERON:0002050
|synonym="presumptive forebrain" EXACT [ZFA:0000062];;"prosencephalon" RELATED []
|comment=TODO. Add relationships to neural plate (both ZFA and EMAPA time this with the neural plate)
|comment=TODO. Add relationships to neural plate (both ZFA and EMAPA time this with the neural plate)
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=emapa_ehdaa2;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0006240
|is_a=UBERON:0006598
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0000922;;UBERON:0006238
|name=future forebrain
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0006238
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=emapa_ehdaa2;;vertebrate_core
|preceded_by=
|synonym="presumptive forebrain" EXACT [ZFA:0000062];;"prosencephalon" RELATED []
|union_of=
|xref=EFO:0003423;;EHDAA2:0000661;;EHDAA:2643;;EMAPA:16640;;TAO:0000062;;ZFA:0000062
}}
}}

Latest revision as of 17:57, 12 September 2014

Name:future forebrain
Namespace:FANTOM
Xrefs:
links:

EFO:0003423
EHDAA2:0000661
EHDAA:2643
EMAPA:16640
TAO:0000062

ZFA:0000062
Synonyms: "presumptive forebrain" EXACT [ZFA:0000062]
"prosencephalon" RELATED []
Comments:TODO. Add relationships to neural plate (both ZFA and EMAPA time this with the neural plate)
Subset: emapa_ehdaa2
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0006598(presumptive structure)
part_of:UBERON:0006238(future brain)



Children

part of:UBERON:0006222 (future diencephalon),UBERON:0014371 (future telencephalon)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006240 (future forebrain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.11e-141FFCP PHASE2:Hg19::chr5:89977201..89977236,+#_33578e20b178c934ad5b7a60cc5954aep@chr5:89977201..89977236, +
6.11e-141FFCP PHASE1:Hg19::chr5:89977201..89977236,+#_33578e20b178c934ad5b7a60cc5954aep@chr5:89977201..89977236, +
2.38e-133FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_4fa925e21646a4c5721a688e41257817p5@ST8SIA3
2.38e-133FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_4fa925e21646a4c5721a688e41257817p5@ST8SIA3
6.8e-130FFCP PHASE2:Hg19::chr6:12717031..12717057,+#_97e6a8013cee26debaf9be09e35c5bf2p5@PHACTR1
6.8e-130FFCP PHASE1:Hg19::chr6:12717031..12717057,+#_97e6a8013cee26debaf9be09e35c5bf2p5@PHACTR1
2.27e-128FFCP PHASE1:Hg19::chr6:12716992..12717005,+#_d878b29670cb65a087dd6d9f34ac97adp3@PHACTR1
2.27e-128FFCP PHASE2:Hg19::chr6:12716992..12717005,+#_d878b29670cb65a087dd6d9f34ac97adp3@PHACTR1
6.39e-128FFCP PHASE2:Hg19::chr10:104178839..104178855,-#_48f4c74011ab65538e2cf08ed913b7b8p6@PSD
6.39e-128FFCP PHASE1:Hg19::chr10:104178839..104178855,-#_48f4c74011ab65538e2cf08ed913b7b8p6@PSD
7.77e-125FFCP PHASE2:Hg19::chr20:61806320..61806344,+#_b33e6758f1f8a3e591dfe31b77e5b45dp@chr20:61806320..61806344, +
7.77e-125FFCP PHASE1:Hg19::chr20:61806320..61806344,+#_b33e6758f1f8a3e591dfe31b77e5b45dp@chr20:61806320..61806344, +
3.82e-123FFCP PHASE1:Hg19::chr19:35633957..35633969,+#_0608786ad8ad0586e6da7b7eee48f883p2@FXYD7
3.82e-123FFCP PHASE2:Hg19::chr19:35633957..35633969,+#_0608786ad8ad0586e6da7b7eee48f883p2@FXYD7
1.09e-121FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_fda764ecbe51012106508becf2b28bc5p1@NR2E1
1.09e-121FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_fda764ecbe51012106508becf2b28bc5p1@NR2E1
2.87e-118FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_c6b6f80d5d3627a690dfff7d38921c8ep5@OPCML
2.87e-118FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_c6b6f80d5d3627a690dfff7d38921c8ep5@OPCML
7.25e-118FFCP PHASE1:Hg19::chr7:154002369..154002398,+#_df75ecaf4f25d80e22b9f207440e80dbp4@DPP6
7.25e-118FFCP PHASE2:Hg19::chr7:154002369..154002398,+#_df75ecaf4f25d80e22b9f207440e80dbp4@DPP6
8.87e-118FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_e98bc3e85dbcd085c768eee6628433bap9@GPM6B
8.87e-118FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_e98bc3e85dbcd085c768eee6628433bap9@GPM6B
1.66e-117FFCP PHASE1:Hg19::chr4:6514469..6514483,-#_c4ba6e7dd744beb133a660b1ccc5152fp@chr4:6514469..6514483, -
1.66e-117FFCP PHASE2:Hg19::chr4:6514469..6514483,-#_c4ba6e7dd744beb133a660b1ccc5152fp@chr4:6514469..6514483, -
2.75e-117FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_3004d62c7d2697eefb8f2078c7c40ebep3@GRIN2B
2.75e-117FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_3004d62c7d2697eefb8f2078c7c40ebep3@GRIN2B
2.82e-116FFCP PHASE1:Hg19::chr6:12717819..12717851,+#_2e130dbdc61dad6b0605b6e8062b4846p4@PHACTR1
2.82e-116FFCP PHASE2:Hg19::chr6:12717819..12717851,+#_2e130dbdc61dad6b0605b6e8062b4846p4@PHACTR1
2.93e-116FFCP PHASE2:Hg19::chr8:104831416..104831427,+#_3e251ccd252a703672e86df6b3ba61dbp8@RIMS2
2.93e-116FFCP PHASE1:Hg19::chr8:104831416..104831427,+#_3e251ccd252a703672e86df6b3ba61dbp8@RIMS2
5.58e-116FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_619fc158d7c0f1a486143232e39dd65ap8@LRRC7
5.58e-116FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_619fc158d7c0f1a486143232e39dd65ap8@LRRC7
6.52e-116FFCP PHASE2:Hg19::chr1:35391249..35391269,-#_f1a6b9cc6d2ecfc44b2537225b9963b4p4@DLGAP3
6.52e-116FFCP PHASE1:Hg19::chr1:35391249..35391269,-#_f1a6b9cc6d2ecfc44b2537225b9963b4p4@DLGAP3
6.61e-116FFCP PHASE2:Hg19::chr6:12717801..12717817,+#_17c043d81bec6ef539323f8a0a680340p8@PHACTR1
6.61e-116FFCP PHASE1:Hg19::chr6:12717801..12717817,+#_17c043d81bec6ef539323f8a0a680340p8@PHACTR1
5.28e-115FFCP PHASE1:Hg19::chr7:111424462..111424496,-#_a2ce1bb1c25284ed6bfc3c53ea3f849cp3@DOCK4
5.28e-115FFCP PHASE2:Hg19::chr7:111424462..111424496,-#_a2ce1bb1c25284ed6bfc3c53ea3f849cp3@DOCK4
5.97e-115FFCP PHASE2:Hg19::chr5:89936560..89936586,+#_f025312d47ea713bc69334c12ea13b10p3@GPR98
5.97e-115FFCP PHASE1:Hg19::chr5:89936560..89936586,+#_f025312d47ea713bc69334c12ea13b10p3@GPR98
1.02e-114FFCP PHASE2:Hg19::chr1:35391417..35391476,-#_3b891db668fa6e5c15ccce9320fc9b8fp2@DLGAP3
1.02e-114FFCP PHASE1:Hg19::chr1:35391417..35391476,-#_3b891db668fa6e5c15ccce9320fc9b8fp2@DLGAP3
1.06e-114FFCP PHASE2:Hg19::chr16:14280513..14280524,+#_ad9ddfd92e772cb0d9e38b08e687c4cap5@MKL2
1.06e-114FFCP PHASE1:Hg19::chr16:14280513..14280524,+#_ad9ddfd92e772cb0d9e38b08e687c4cap5@MKL2
8.42e-114FFCP PHASE1:Hg19::chr6:97753454..97753523,+#_2ef1393570f2870e0eadd45f5985297dp1@uc003ppd.1
8.42e-114FFCP PHASE2:Hg19::chr6:97753454..97753523,+#_2ef1393570f2870e0eadd45f5985297dp1@uc003ppd.1
3.53e-113FFCP PHASE1:Hg19::chr1:70035018..70035044,+#_c7be013a5a155eacf27ee0753ca49411p@chr1:70035018..70035044, +
3.53e-113FFCP PHASE2:Hg19::chr1:70035018..70035044,+#_c7be013a5a155eacf27ee0753ca49411p@chr1:70035018..70035044, +
5.22e-113FFCP PHASE2:Hg19::chr4:46392101..46392112,-#_22a21fe10ca0c949f1738e8c156ea8cbp6@GABRA2
5.22e-113FFCP PHASE1:Hg19::chr4:46392101..46392112,-#_22a21fe10ca0c949f1738e8c156ea8cbp6@GABRA2
5.23e-113FFCP PHASE2:Hg19::chr12:120242250..120242273,-#_193b7f365fc21939b5dbaee2d729abc5p6@CIT
5.23e-113FFCP PHASE1:Hg19::chr12:120242250..120242273,-#_193b7f365fc21939b5dbaee2d729abc5p6@CIT
1.08e-112FFCP PHASE2:Hg19::chr19:49016319..49016405,-#_e29d7a53bad8f5dd0cb127ba5695ab56p2@LMTK3
1.08e-112FFCP PHASE1:Hg19::chr19:49016319..49016405,-#_e29d7a53bad8f5dd0cb127ba5695ab56p2@LMTK3
1.26e-112FFCP PHASE2:Hg19::chrX:13835472..13835483,-#_74865b7dc3038fe47a3f8c4eecbc9463p10@GPM6B
1.26e-112FFCP PHASE1:Hg19::chrX:13835472..13835483,-#_74865b7dc3038fe47a3f8c4eecbc9463p10@GPM6B
1.39e-112FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_41a5f58d4be4cecc23a9542c390aeb8cp@chr5:80255907..80255942, +
1.39e-112FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_41a5f58d4be4cecc23a9542c390aeb8cp@chr5:80255907..80255942, +
1.42e-112FFCP PHASE1:Hg19::chr17:61194578..61194599,+#_bf527486f1e48d80874a85da1c9408d8p@chr17:61194578..61194599, +
1.42e-112FFCP PHASE2:Hg19::chr17:61194578..61194599,+#_bf527486f1e48d80874a85da1c9408d8p@chr17:61194578..61194599, +
1.66e-112FFCP PHASE2:Hg19::chr5:89977181..89977199,+#_5efa480c101467c5b027e8577c81e2ffp@chr5:89977181..89977199, +
1.66e-112FFCP PHASE1:Hg19::chr5:89977181..89977199,+#_5efa480c101467c5b027e8577c81e2ffp@chr5:89977181..89977199, +
6.89e-112FFCP PHASE2:Hg19::chr7:94843638..94843650,-#_8baabdd3026c65e13544479cd91426d1p1@ENST00000417881
6.89e-112FFCP PHASE1:Hg19::chr7:94843638..94843650,-#_8baabdd3026c65e13544479cd91426d1p1@ENST00000417881
7.85e-112FFCP PHASE1:Hg19::chr7:154002341..154002355,+#_72224f42b2f2cb187e0c54f089f99388p6@DPP6
7.85e-112FFCP PHASE2:Hg19::chr7:154002341..154002355,+#_72224f42b2f2cb187e0c54f089f99388p6@DPP6
1.02e-111FFCP PHASE1:Hg19::chr5:27038708..27038730,-#_39278ced699f013f61a0c81eefe98c27p2@CDH9
1.02e-111FFCP PHASE2:Hg19::chr5:27038708..27038730,-#_39278ced699f013f61a0c81eefe98c27p2@CDH9
1.42e-111FFCP PHASE2:Hg19::chr2:3134361..3134374,-#_155aa68210ac9d1cd33f3ce257cc2e1ep@chr2:3134361..3134374, -
1.42e-111FFCP PHASE1:Hg19::chr2:3134361..3134374,-#_155aa68210ac9d1cd33f3ce257cc2e1ep@chr2:3134361..3134374, -
1.94e-111FFCP PHASE2:Hg19::chr6:155538132..155538147,+#_3bdab584955aedf972596dc1a14f47a7p3@TIAM2
1.94e-111FFCP PHASE1:Hg19::chr6:155538132..155538147,+#_3bdab584955aedf972596dc1a14f47a7p3@TIAM2
3.18e-111FFCP PHASE2:Hg19::chr3:124103620..124103704,+#_17c50a77a73948c6e85f56edbf3ec4dap1@KALRN
3.18e-111FFCP PHASE1:Hg19::chr3:124103620..124103704,+#_17c50a77a73948c6e85f56edbf3ec4dap1@KALRN
4.18e-111FFCP PHASE1:Hg19::chr1:177134053..177134069,-#_d350f56be320258adeae1e45c85ec698p4@ASTN1
4.18e-111FFCP PHASE2:Hg19::chr1:177134053..177134069,-#_d350f56be320258adeae1e45c85ec698p4@ASTN1
5.69e-111FFCP PHASE1:Hg19::chr11:132982177..132982181,-#_9510378901ef572b191ba73434b542dcp@chr11:132982177..132982181, -
5.69e-111FFCP PHASE2:Hg19::chr11:132982177..132982181,-#_9510378901ef572b191ba73434b542dcp@chr11:132982177..132982181, -
7.54e-111FFCP PHASE2:Hg19::chr8:63161215..63161235,+#_d9314200a207caa7920718b3882348c5p5@NKAIN3
7.54e-111FFCP PHASE1:Hg19::chr8:63161215..63161235,+#_d9314200a207caa7920718b3882348c5p5@NKAIN3
1.27e-110FFCP PHASE2:Hg19::chr12:99548462..99548482,-#_d94e32705250190511b0402c907fabf5p9@ANKS1B
1.27e-110FFCP PHASE1:Hg19::chr12:99548462..99548482,-#_d94e32705250190511b0402c907fabf5p9@ANKS1B
1.38e-110FFCP PHASE1:Hg19::chr15:80735246..80735321,+#_4e35fb7f60281d8af90f2408995cd398p3@ARNT2
1.38e-110FFCP PHASE2:Hg19::chr15:80735246..80735321,+#_4e35fb7f60281d8af90f2408995cd398p3@ARNT2
2.12e-110FFCP PHASE2:Hg19::chr20:1791316..1791339,-#_b61b2b9c95d277e7c642640c56803e02p@chr20:1791316..1791339, -
2.12e-110FFCP PHASE1:Hg19::chr20:1791316..1791339,-#_b61b2b9c95d277e7c642640c56803e02p@chr20:1791316..1791339, -
2.27e-110FFCP PHASE2:Hg19::chr9:112629781..112629806,+#_8569eda7a83d220bbfb4a18778c56c6ep14@PALM2-AKAP2
2.27e-110FFCP PHASE1:Hg19::chr9:112629781..112629806,+#_8569eda7a83d220bbfb4a18778c56c6ep14@PALM2-AKAP2
3.45e-110FFCP PHASE1:Hg19::chrX:13835398..13835429,-#_f84c31ec7bab849930c049e3255ed4fdp6@GPM6B
3.45e-110FFCP PHASE2:Hg19::chrX:13835398..13835429,-#_f84c31ec7bab849930c049e3255ed4fdp6@GPM6B
4.23e-110FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_b4bd55a371f8ce97eda5233c1609e070p1@ENST00000412957
4.23e-110FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_b4bd55a371f8ce97eda5233c1609e070p1@ENST00000412957
5.12e-110FFCP PHASE2:Hg19::chr12:99548342..99548354,-#_4efa6e6923a4c43d45b3099ebd4ddc88p7@ANKS1B
5.12e-110FFCP PHASE1:Hg19::chr12:99548342..99548354,-#_4efa6e6923a4c43d45b3099ebd4ddc88p7@ANKS1B
7.19e-110FFCP PHASE2:Hg19::chr20:1791288..1791304,-#_7cbeb7f812d78eb443b3f54397276732p@chr20:1791288..1791304, -
7.19e-110FFCP PHASE1:Hg19::chr20:1791288..1791304,-#_7cbeb7f812d78eb443b3f54397276732p@chr20:1791288..1791304, -
9.49e-110FFCP PHASE2:Hg19::chr21:43917145..43917190,-#_601787aa9f9a480d5d60cd462b79f0c5p@chr21:43917145..43917190, -
9.49e-110FFCP PHASE1:Hg19::chr21:43917145..43917190,-#_601787aa9f9a480d5d60cd462b79f0c5p@chr21:43917145..43917190, -
1.01e-109FFCP PHASE2:Hg19::chr6:155538093..155538109,+#_50022d3d9ae40ed6ccccf2d358a1b27ap2@TIAM2
1.01e-109FFCP PHASE1:Hg19::chr6:155538093..155538109,+#_50022d3d9ae40ed6ccccf2d358a1b27ap2@TIAM2

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0006240&oldid=3277836"