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{{UBERON
{{UBERON
|id=UBERON:0006241
|alt_id=
|name=future spinal cord
|namespace=
|def=
|xref=EFO:0003438;;EHDAA:898;;EHDAA2:0000674;;EMAPA:16092;;EMAPA:16525;;EMAPA:16755;;ZFA:0000417
|is_a=UBERON:0005423
|synonym="presumptive spinal cord" EXACT [ZFA:0000417]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0006241
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|name=future spinal cord
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922;;UBERON:0001017
|part_of=UBERON:0000922;;UBERON:0001017
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=vertebrate_core
|preceded_by=
|synonym="presumptive spinal cord" EXACT [ZFA:0000417]
|union_of=
|xref=EFO:0003438;;EHDAA2:0000674;;EHDAA:898;;EMAPA:16092;;EMAPA:16525;;EMAPA:16755;;TAO:0000417;;ZFA:0000417
}}
}}

Latest revision as of 17:57, 12 September 2014

Name:future spinal cord
Namespace:FANTOM
Xrefs:
links:

EFO:0003438
EHDAA2:0000674
EHDAA:898
EMAPA:16092
EMAPA:16525
EMAPA:16755
TAO:0000417

ZFA:0000417
Synonyms: "presumptive spinal cord" EXACT [ZFA:0000417]
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
part_of:UBERON:0000922(embryo),UBERON:0001017(central nervous system)



Children NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006241 (future spinal cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.5e-145FFCP PHASE2:Hg19::chr12:106976678..106976708,+#_d0ace6a835259f0761ab08022beaf259p2@RFX4
9.5e-145FFCP PHASE1:Hg19::chr12:106976678..106976708,+#_d0ace6a835259f0761ab08022beaf259p2@RFX4
4.41e-144FFCP PHASE2:Hg19::chr5:87439352..87439386,-#_e7387612498523e792095e9c77cfaf56p@chr5:87439352..87439386, -
4.41e-144FFCP PHASE1:Hg19::chr5:87439352..87439386,-#_e7387612498523e792095e9c77cfaf56p@chr5:87439352..87439386, -
5.06e-144FFCP PHASE1:Hg19::chr2:74612644..74612670,+#_05e39faec1db85829a71eeee861589d7p1@ENST00000412957
5.06e-144FFCP PHASE2:Hg19::chr2:74612644..74612670,+#_05e39faec1db85829a71eeee861589d7p1@ENST00000412957
1.1e-143FFCP PHASE2:Hg19::chr5:11588907..11588967,-#_66e4afa105aa25a5b3c07295dc786995p3@CTNND2
1.1e-143FFCP PHASE1:Hg19::chr5:11588907..11588967,-#_66e4afa105aa25a5b3c07295dc786995p3@CTNND2
1.17e-142FFCP PHASE2:Hg19::chr4:46126063..46126087,-#_6bb59cc830083fec148f6113a58e3b17p2@GABRG1
1.17e-142FFCP PHASE1:Hg19::chr4:46126063..46126087,-#_6bb59cc830083fec148f6113a58e3b17p2@GABRG1
2.68e-142FFCP PHASE2:Hg19::chr2:50201220..50201261,-#_9a6adfec952c694f0036c85fc0f2c53fp3@NRXN1
2.68e-142FFCP PHASE1:Hg19::chr2:50201220..50201261,-#_9a6adfec952c694f0036c85fc0f2c53fp3@NRXN1
1.04e-141FFCP PHASE1:Hg19::chr5:112074041..112074101,+#_3b864faeda0deff816410a2a1dc2b555p4@APC
1.04e-141FFCP PHASE2:Hg19::chr5:112074041..112074101,+#_3b864faeda0deff816410a2a1dc2b555p4@APC
1.18e-141FFCP PHASE2:Hg19::chr5:11384884..11384916,-#_b071175d191f5246091a38ca1a619950p8@CTNND2
1.18e-141FFCP PHASE1:Hg19::chr5:11384884..11384916,-#_b071175d191f5246091a38ca1a619950p8@CTNND2
7.98e-141FFCP PHASE1:Hg19::chr18:32398296..32398318,+#_059e474ba2ce1aaaa1b344114c3e6e49p7@DTNA
7.98e-141FFCP PHASE2:Hg19::chr18:32398296..32398318,+#_059e474ba2ce1aaaa1b344114c3e6e49p7@DTNA
1.0e-140FFCP PHASE2:Hg19::chr17:68101117..68101162,+#_c81184a662c149afa9bcc068131cbc7ep2@KCNJ16
1.0e-140FFCP PHASE1:Hg19::chr17:68101117..68101162,+#_c81184a662c149afa9bcc068131cbc7ep2@KCNJ16
2.58e-140FFCP PHASE1:Hg19::chr5:146314142..146314146,-#_7ba7b5fcaf6458dd6cc5dce865d73f54p@chr5:146314142..146314146, -
2.58e-140FFCP PHASE2:Hg19::chr5:146314142..146314146,-#_7ba7b5fcaf6458dd6cc5dce865d73f54p@chr5:146314142..146314146, -
1.46e-139FFCP PHASE1:Hg19::chr12:106976774..106976788,+#_e2321cfa49e7ae436b3e336865969e6cp1@RFX4
1.46e-139FFCP PHASE2:Hg19::chr12:106976774..106976788,+#_e2321cfa49e7ae436b3e336865969e6cp1@RFX4
9.16e-139FFCP PHASE2:Hg19::chr12:106976656..106976672,+#_2b2b64c9b286e179c86bfb2b7da3518ep4@RFX4
9.16e-139FFCP PHASE1:Hg19::chr12:106976656..106976672,+#_2b2b64c9b286e179c86bfb2b7da3518ep4@RFX4
1.47e-138FFCP PHASE2:Hg19::chr1:84630574..84630602,+#_aba9fde36137375faa2ee6c3ae0aff33p9@PRKACB
1.47e-138FFCP PHASE1:Hg19::chr1:84630574..84630602,+#_aba9fde36137375faa2ee6c3ae0aff33p9@PRKACB
4.62e-138FFCP PHASE2:Hg19::chr5:11386115..11386130,-#_03fddfcb0e51cfe3f8f5114b5ff64f25p2@CTNND2
4.62e-138FFCP PHASE1:Hg19::chr5:11386115..11386130,-#_03fddfcb0e51cfe3f8f5114b5ff64f25p2@CTNND2
1.71e-137FFCP PHASE2:Hg19::chr15:46702499..46702523,+#_69347512ebcbb0c17aac714842673cdfp@chr15:46702499..46702523, +
1.71e-137FFCP PHASE1:Hg19::chr15:46702499..46702523,+#_69347512ebcbb0c17aac714842673cdfp@chr15:46702499..46702523, +
5.75e-137FFCP PHASE1:Hg19::chr1:84630610..84630621,+#_0b4528be07a5f77ebe74b1f2bbfc5700p17@PRKACB
5.75e-137FFCP PHASE2:Hg19::chr1:84630610..84630621,+#_0b4528be07a5f77ebe74b1f2bbfc5700p17@PRKACB
6.55e-137FFCP PHASE2:Hg19::chr9:87283501..87283520,+#_77e0002e6e71dadf329df6cd9ce0e8e2p17@NTRK2
6.55e-137FFCP PHASE1:Hg19::chr9:87283501..87283520,+#_77e0002e6e71dadf329df6cd9ce0e8e2p17@NTRK2
8.93e-137FFCP PHASE2:Hg19::chr6:80131670..80131724,+#_708bbd3d9169236b2ce3a4770bf9eb15p@chr6:80131670..80131724, +
8.93e-137FFCP PHASE1:Hg19::chr6:80131670..80131724,+#_708bbd3d9169236b2ce3a4770bf9eb15p@chr6:80131670..80131724, +
2.51e-136FFCP PHASE1:Hg19::chr11:35441048..35441059,-#_54b88a63576d45fef6aee7eb231cf8ecp4@SLC1A2
2.51e-136FFCP PHASE2:Hg19::chr11:35441048..35441059,-#_54b88a63576d45fef6aee7eb231cf8ecp4@SLC1A2
2.84e-136FFCP PHASE2:Hg19::chr5:160279207..160279247,-#_6e259111142d2c6baf211ad914e76370p1@ATP10B
2.84e-136FFCP PHASE1:Hg19::chr5:160279207..160279247,-#_6e259111142d2c6baf211ad914e76370p1@ATP10B
3.14e-136FFCP PHASE2:Hg19::chr1:2005182..2005194,+#_a1458b517bb6efe336da2d82163b8e94p8@PRKCZ
3.14e-136FFCP PHASE1:Hg19::chr1:2005182..2005194,+#_a1458b517bb6efe336da2d82163b8e94p8@PRKCZ
4.26e-136FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_04b42192b058cd24b013e3fbce2fe67dp9@GPM6B
4.26e-136FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_04b42192b058cd24b013e3fbce2fe67dp9@GPM6B
5.24e-136FFCP PHASE2:Hg19::chr18:24443122..24443142,-#_77df83b88976d215205b2e7e9637cb9cp5@AQP4
5.24e-136FFCP PHASE1:Hg19::chr18:24443122..24443142,-#_77df83b88976d215205b2e7e9637cb9cp5@AQP4
5.54e-136FFCP PHASE2:Hg19::chr2:74612614..74612643,+#_0fed20630d2b6f27f46136357c3bbf90p1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
5.54e-136FFCP PHASE1:Hg19::chr2:74612614..74612643,+#_0fed20630d2b6f27f46136357c3bbf90p1@ENST00000418990, p1@ENST00000426715, p1@ENST00000427343
9.78e-136FFCP PHASE1:Hg19::chr6:56716896..56716928,-#_7268d7a3ce93d15fa0483f85fb9455f2p8@DST
9.78e-136FFCP PHASE2:Hg19::chr6:56716896..56716928,-#_7268d7a3ce93d15fa0483f85fb9455f2p8@DST
1.52e-135FFCP PHASE1:Hg19::chr7:47420733..47420758,-#_c21087bb9ba15eec05a2b17258c38418p@chr7:47420733..47420758, -
1.52e-135FFCP PHASE2:Hg19::chr7:47420733..47420758,-#_c21087bb9ba15eec05a2b17258c38418p@chr7:47420733..47420758, -
2.32e-135FFCP PHASE1:Hg19::chr17:54230819..54230848,+#_805f4892475c2eac2a335e6c41c45d8dp1@ANKFN1
2.32e-135FFCP PHASE2:Hg19::chr17:54230819..54230848,+#_805f4892475c2eac2a335e6c41c45d8dp1@ANKFN1
3.21e-135FFCP PHASE1:Hg19::chr4:46126009..46126045,-#_6ac9ef817440c0abf7540963c2e1728ep1@GABRG1
3.21e-135FFCP PHASE2:Hg19::chr4:46126009..46126045,-#_6ac9ef817440c0abf7540963c2e1728ep1@GABRG1
5.25e-135FFCP PHASE1:Hg19::chr17:7558857..7558903,+#_d733f837fd879051670daba4a4cada0cp@chr17:7558857..7558903, +
5.25e-135FFCP PHASE2:Hg19::chr17:7558857..7558903,+#_d733f837fd879051670daba4a4cada0cp@chr17:7558857..7558903, +
8.03e-135FFCP PHASE1:Hg19::chr2:73286253..73286279,-#_1e6211fa721e56c0f9f2b0f1c9c3ed70p3@SFXN5
8.03e-135FFCP PHASE2:Hg19::chr2:73286253..73286279,-#_1e6211fa721e56c0f9f2b0f1c9c3ed70p3@SFXN5
1.91e-134FFCP PHASE1:Hg19::chr4:46126093..46126106,-#_4f5ca4d5e8e6ecbccebcbc1092f20793p3@GABRG1
1.91e-134FFCP PHASE2:Hg19::chr4:46126093..46126106,-#_4f5ca4d5e8e6ecbccebcbc1092f20793p3@GABRG1
2.97e-134FFCP PHASE2:Hg19::chr18:32398400..32398416,+#_c4dddec17cc02af343b35a2d48cb3744p10@DTNA
2.97e-134FFCP PHASE1:Hg19::chr18:32398400..32398416,+#_c4dddec17cc02af343b35a2d48cb3744p10@DTNA
4.25e-134FFCP PHASE2:Hg19::chr18:32398372..32398394,+#_e0d303797db74d2067a05c3daf787803p5@DTNA
4.25e-134FFCP PHASE1:Hg19::chr18:32398372..32398394,+#_e0d303797db74d2067a05c3daf787803p5@DTNA
4.84e-134FFCP PHASE1:Hg19::chr17:42989121..42989166,-#_b44309b49d23267207386b7ca031dabbp7@GFAP
4.84e-134FFCP PHASE2:Hg19::chr17:42989121..42989166,-#_b44309b49d23267207386b7ca031dabbp7@GFAP
5.15e-134FFCP PHASE1:Hg19::chr1:156217805..156217817,-#_d019695381f80e99f560764a29c5538bp2@PAQR6
5.15e-134FFCP PHASE2:Hg19::chr1:156217805..156217817,-#_d019695381f80e99f560764a29c5538bp2@PAQR6
1.37e-133FFCP PHASE1:Hg19::chr16:72459772..72459794,+#_cee58eb0b0a14e47e8339e916bedf62dp2@uc002fch.1
1.37e-133FFCP PHASE2:Hg19::chr16:72459772..72459794,+#_cee58eb0b0a14e47e8339e916bedf62dp2@uc002fch.1
1.42e-133FFCP PHASE2:Hg19::chr17:36760961..36760976,-#_6b1194f2539c3e27ac8e982ddf2c2152p2@SRCIN1
1.42e-133FFCP PHASE1:Hg19::chr17:36760961..36760976,-#_6b1194f2539c3e27ac8e982ddf2c2152p2@SRCIN1
1.45e-133FFCP PHASE1:Hg19::chr3:153838982..153839001,-#_571a41c4e82923105ca4b0d44e39c2c5p4@ARHGEF26-AS1
1.45e-133FFCP PHASE2:Hg19::chr3:153838982..153839001,-#_571a41c4e82923105ca4b0d44e39c2c5p4@ARHGEF26-AS1
2.38e-133FFCP PHASE2:Hg19::chr12:41221684..41221704,+#_d3fc925ff704deb18f7ab92c952de03ap5@CNTN1
2.38e-133FFCP PHASE1:Hg19::chr12:41221684..41221704,+#_d3fc925ff704deb18f7ab92c952de03ap5@CNTN1
2.91e-133FFCP PHASE1:Hg19::chr5:11384929..11384947,-#_427cc2faad81143a2b4bfed08249598ap15@CTNND2
2.91e-133FFCP PHASE2:Hg19::chr5:11384929..11384947,-#_427cc2faad81143a2b4bfed08249598ap15@CTNND2
3.31e-133FFCP PHASE1:Hg19::chr12:57980138..57980165,+#_b5edcd6b757c4807c755b92b0aaa5a3ep3@KIF5A
3.31e-133FFCP PHASE2:Hg19::chr12:57980138..57980165,+#_b5edcd6b757c4807c755b92b0aaa5a3ep3@KIF5A
3.45e-133FFCP PHASE2:Hg19::chr1:110082487..110082535,+#_690b2ab59e3cf8779ad3b26429864ee6p1@GPR61
3.45e-133FFCP PHASE1:Hg19::chr1:110082487..110082535,+#_690b2ab59e3cf8779ad3b26429864ee6p1@GPR61
1.11e-132FFCP PHASE2:Hg19::chr8:63161215..63161235,+#_181d0085002de98556564570c6cf9010p5@NKAIN3
1.11e-132FFCP PHASE1:Hg19::chr8:63161215..63161235,+#_181d0085002de98556564570c6cf9010p5@NKAIN3
1.25e-132FFCP PHASE2:Hg19::chr15:30261066..30261096,-#_9cfe55dd28c41f267f7ca84bdaeaaffbp12@TJP1
1.25e-132FFCP PHASE1:Hg19::chr15:30261066..30261096,-#_9cfe55dd28c41f267f7ca84bdaeaaffbp12@TJP1
1.94e-132FFCP PHASE2:Hg19::chr17:7560542..7560578,+#_d7a679d048467beec047254cda6a0407p4@ATP1B2
1.94e-132FFCP PHASE1:Hg19::chr17:7560542..7560578,+#_d7a679d048467beec047254cda6a0407p4@ATP1B2
2.17e-132FFCP PHASE2:Hg19::chr7:29519599..29519612,+#_25c3041aba1b3080ddf4667e12ee763bp9@CHN2
2.17e-132FFCP PHASE1:Hg19::chr7:29519599..29519612,+#_25c3041aba1b3080ddf4667e12ee763bp9@CHN2
2.85e-132FFCP PHASE2:Hg19::chr12:102060112..102060135,+#_d28f917e9cbecabe4985e06782b9281ap4@MYBPC1
2.85e-132FFCP PHASE1:Hg19::chr12:102060112..102060135,+#_d28f917e9cbecabe4985e06782b9281ap4@MYBPC1
3.19e-132FFCP PHASE2:Hg19::chr5:87437100..87437115,-#_8e41889d5f69a6005c39d857f316edccp1@LOC100289347
3.19e-132FFCP PHASE1:Hg19::chr5:87437100..87437115,-#_8e41889d5f69a6005c39d857f316edccp1@LOC100289347
4.04e-132FFCP PHASE2:Hg19::chr2:210526233..210526258,+#_acb9fa3aa607c83413c77f634b6cabdcp9@MAP2
4.04e-132FFCP PHASE1:Hg19::chr2:210526233..210526258,+#_acb9fa3aa607c83413c77f634b6cabdcp9@MAP2

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