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{{UBERON
{{UBERON
|id=UBERON:0007914
|alt_id=
|name=head or neck bone
|namespace=
|def=
|xref=MA:0000569
|is_a=UBERON:0001474
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0007914
|is_a=UBERON:0001474
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=head or neck bone
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0007811
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=MA:0000569
}}
}}

Latest revision as of 18:03, 12 September 2014

Name:head or neck bone
Namespace:FANTOM
Xrefs:
links:
MA:0000569

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001474(bone element)
part_of:UBERON:0007811(craniocervical region)



Children

is a:UBERON:0003457 (head bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)

Mouse (Mus musculus)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007914 (head or neck bone), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_570e3aab45d7e47547f628ed89e9d81bp14@C17orf67
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_570e3aab45d7e47547f628ed89e9d81bp14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_9012a5a077064ebfd5b6e162ce136ea6p11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_9012a5a077064ebfd5b6e162ce136ea6p13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_9012a5a077064ebfd5b6e162ce136ea6p13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_9012a5a077064ebfd5b6e162ce136ea6p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_9012a5a077064ebfd5b6e162ce136ea6p@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_9012a5a077064ebfd5b6e162ce136ea6p12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_9012a5a077064ebfd5b6e162ce136ea6p11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_9012a5a077064ebfd5b6e162ce136ea6p@chr8:57353655..57353662, -
1.87e-86FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_c7b014f591b3f452f653d0547dd682dfp@chr14:31283072..31283081, -
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_c7b014f591b3f452f653d0547dd682dfp@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_c7b014f591b3f452f653d0547dd682dfp@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_c7b014f591b3f452f653d0547dd682dfp7@Glt25d2
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_c7b014f591b3f452f653d0547dd682dfp6@Fam70b
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_c7b014f591b3f452f653d0547dd682dfp2@Strc
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_c7b014f591b3f452f653d0547dd682dfp9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_c7b014f591b3f452f653d0547dd682dfp3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_c7b014f591b3f452f653d0547dd682dfp@chr15:12848147..12848162, +
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_c7b014f591b3f452f653d0547dd682dfp@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_c7b014f591b3f452f653d0547dd682dfp1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_c7b014f591b3f452f653d0547dd682dfp@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_c7b014f591b3f452f653d0547dd682dfp@chr10:108316802..108316807, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_c7b014f591b3f452f653d0547dd682dfp@chr1:172843847..172843880, -
1.87e-86FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_c7b014f591b3f452f653d0547dd682dfp2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_c7b014f591b3f452f653d0547dd682dfp@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_c7b014f591b3f452f653d0547dd682dfp@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_c7b014f591b3f452f653d0547dd682dfp13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_c7b014f591b3f452f653d0547dd682dfp6@Tecta
1.87e-86FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_c7b014f591b3f452f653d0547dd682dfp2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_c7b014f591b3f452f653d0547dd682dfp5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_c7b014f591b3f452f653d0547dd682dfp3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_c7b014f591b3f452f653d0547dd682dfp3@Strc
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_c7b014f591b3f452f653d0547dd682dfp1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_c7b014f591b3f452f653d0547dd682dfp4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_c7b014f591b3f452f653d0547dd682dfp@chr5:28035962..28035983, +
1.87e-86FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_c7b014f591b3f452f653d0547dd682dfp@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_c7b014f591b3f452f653d0547dd682dfp4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_c7b014f591b3f452f653d0547dd682dfp@chr17:13983179..13983190, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_c7b014f591b3f452f653d0547dd682dfp@chr9:42207397..42207408, -
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_c7b014f591b3f452f653d0547dd682dfp@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_c7b014f591b3f452f653d0547dd682dfp2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_c7b014f591b3f452f653d0547dd682dfp2@Slc26a5
1.87e-86FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_c7b014f591b3f452f653d0547dd682dfp@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_c7b014f591b3f452f653d0547dd682dfp2@Fscn2
1.87e-86FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_c7b014f591b3f452f653d0547dd682dfp@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_c7b014f591b3f452f653d0547dd682dfp@chr1:16651649..16651655, +
1.87e-86FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_c7b014f591b3f452f653d0547dd682dfp7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_c7b014f591b3f452f653d0547dd682dfp@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_c7b014f591b3f452f653d0547dd682dfp@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_c7b014f591b3f452f653d0547dd682dfp@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_c7b014f591b3f452f653d0547dd682dfp@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_c7b014f591b3f452f653d0547dd682dfp@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_c7b014f591b3f452f653d0547dd682dfp@chr15:12848147..12848162, +
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_c7b014f591b3f452f653d0547dd682dfp@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_c7b014f591b3f452f653d0547dd682dfp@chr6:29428397..29428407, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_c7b014f591b3f452f653d0547dd682dfp1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_c7b014f591b3f452f653d0547dd682dfp3@Epyc
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_c7b014f591b3f452f653d0547dd682dfp@chr4:63079735..63079745, -
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_c7b014f591b3f452f653d0547dd682dfp@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_c7b014f591b3f452f653d0547dd682dfp@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_c7b014f591b3f452f653d0547dd682dfp@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_c7b014f591b3f452f653d0547dd682dfp4@Chrna10
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_c7b014f591b3f452f653d0547dd682dfp@chr11:75421384..75421397, +
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_c7b014f591b3f452f653d0547dd682dfp1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_c7b014f591b3f452f653d0547dd682dfp@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_c7b014f591b3f452f653d0547dd682dfp@chr8:13414266..13414279, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_c7b014f591b3f452f653d0547dd682dfp@chr6:113251606..113251613, +
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_c7b014f591b3f452f653d0547dd682dfp@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_c7b014f591b3f452f653d0547dd682dfp@chr14:102297728..102297742, +
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_c7b014f591b3f452f653d0547dd682dfp@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_c7b014f591b3f452f653d0547dd682dfp1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_c7b014f591b3f452f653d0547dd682dfp@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_c7b014f591b3f452f653d0547dd682dfp@chr11:4689776..4689785, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_c7b014f591b3f452f653d0547dd682dfp5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_c7b014f591b3f452f653d0547dd682dfp10@Otof
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_c7b014f591b3f452f653d0547dd682dfp1@Otol1
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_c7b014f591b3f452f653d0547dd682dfp4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_c7b014f591b3f452f653d0547dd682dfp3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_c7b014f591b3f452f653d0547dd682dfp2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_c7b014f591b3f452f653d0547dd682dfp@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_c7b014f591b3f452f653d0547dd682dfp11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_c7b014f591b3f452f653d0547dd682dfp@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_c7b014f591b3f452f653d0547dd682dfp@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_c7b014f591b3f452f653d0547dd682dfp@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_c7b014f591b3f452f653d0547dd682dfp@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_c7b014f591b3f452f653d0547dd682dfp2@Plscr5
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_c7b014f591b3f452f653d0547dd682dfp@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_c7b014f591b3f452f653d0547dd682dfp@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_c7b014f591b3f452f653d0547dd682dfp@chr1:172843847..172843880, -
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_c7b014f591b3f452f653d0547dd682dfp@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_c7b014f591b3f452f653d0547dd682dfp@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_c7b014f591b3f452f653d0547dd682dfp@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_c7b014f591b3f452f653d0547dd682dfp12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_c7b014f591b3f452f653d0547dd682dfp@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_c7b014f591b3f452f653d0547dd682dfp@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_c7b014f591b3f452f653d0547dd682dfp@chr3:154459246..154459253, +
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_c7b014f591b3f452f653d0547dd682dfp@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_c7b014f591b3f452f653d0547dd682dfp7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_c7b014f591b3f452f653d0547dd682dfp3@Epyc

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