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{{UBERON
{{UBERON
|id=UBERON:0008836
|alt_id=
|name=liver bud
|namespace=
|def=
|xref=BTO:0001642
|is_a=UBERON:0005423
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0008835
|develops_from=UBERON:0008835
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0008836
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=liver bud
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0006235
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0001642
}}
}}

Latest revision as of 18:04, 12 September 2014

Name:liver bud
Namespace:FANTOM
Xrefs:
links:
BTO:0001642

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0008835(hepatic diverticulum)
part_of:UBERON:0006235(foregut-midgut junction)



Children

develops from:UBERON:0002107 (liver)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0008836 (liver bud), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.93e-83FFCP PHASE2:Hg19::chr12:100867777..100867788,+#_9746a3ed02f2e0a32f2ff82bfc415c37p5@NR1H4
3.93e-83FFCP PHASE1:Hg19::chr12:100867777..100867788,+#_9746a3ed02f2e0a32f2ff82bfc415c37p5@NR1H4
1.46e-82FFCP PHASE1:Hg19::chr8:144417558..144417572,-#_0bb9c73528d7c863b78783444f482d7fp7@TOP1MT
1.46e-82FFCP PHASE1:Hg19::chr2:21233797..21233804,-#_0bb9c73528d7c863b78783444f482d7fp58@APOB
1.46e-82FFCP PHASE2:Hg19::chr2:21233797..21233804,-#_0bb9c73528d7c863b78783444f482d7fp58@APOB
1.46e-82FFCP PHASE2:Hg19::chr8:144417558..144417572,-#_0bb9c73528d7c863b78783444f482d7fp7@TOP1MT
5.75e-76FFCP PHASE2:Hg19::chrX:153769426..153769436,+#_0815f14ce0466fa7265f208e53e3677ep18@IKBKG
5.75e-76FFCP PHASE1:Hg19::chrX:153769426..153769436,+#_0815f14ce0466fa7265f208e53e3677ep18@IKBKG
9.69e-76FFCP PHASE1:Hg19::chr10:7745167..7745178,+#_c1b708aa272f267a25a2c02424b90aa6p3@ITIH2
9.69e-76FFCP PHASE2:Hg19::chr10:7745167..7745178,+#_c1b708aa272f267a25a2c02424b90aa6p3@ITIH2
1.94e-75FFCP PHASE2:Hg19::chr2:97216132..97216143,+#_34b00ec8db1e5e6cf1dfbb6f9adecdd1p@chr2:97216132..97216143, +
1.94e-75FFCP PHASE1:Hg19::chr2:97216132..97216143,+#_34b00ec8db1e5e6cf1dfbb6f9adecdd1p@chr2:97216132..97216143, +
1.74e-73FFCP PHASE1:Hg19::chr20:10349456..10349475,-#_f64e0f2f71b6ea2e06c357302fc61503p1@ENST00000421143
1.74e-73FFCP PHASE2:Hg19::chr2:21239379..21239390,-#_f64e0f2f71b6ea2e06c357302fc61503p@chr2:21239379..21239390, -
1.74e-73FFCP PHASE1:Hg19::chr10:82049381..82049384,-#_f64e0f2f71b6ea2e06c357302fc61503p9@MAT1A
1.74e-73FFCP PHASE2:Hg19::chr2:21258509..21258518,-#_f64e0f2f71b6ea2e06c357302fc61503p@chr2:21258509..21258518, -
1.74e-73FFCP PHASE2:Hg19::chr2:21228233..21228242,-#_f64e0f2f71b6ea2e06c357302fc61503p56@APOB
1.74e-73FFCP PHASE1:Hg19::chr2:21258509..21258518,-#_f64e0f2f71b6ea2e06c357302fc61503p@chr2:21258509..21258518, -
1.74e-73FFCP PHASE1:Hg19::chr2:21228233..21228242,-#_f64e0f2f71b6ea2e06c357302fc61503p56@APOB
1.74e-73FFCP PHASE2:Hg19::chr20:10349456..10349475,-#_f64e0f2f71b6ea2e06c357302fc61503p1@ENST00000421143
1.74e-73FFCP PHASE2:Hg19::chr20:22566089..22566097,-#_f64e0f2f71b6ea2e06c357302fc61503p6@FOXA2
1.74e-73FFCP PHASE1:Hg19::chr2:21239379..21239390,-#_f64e0f2f71b6ea2e06c357302fc61503p@chr2:21239379..21239390, -
1.74e-73FFCP PHASE2:Hg19::chr10:82049381..82049384,-#_f64e0f2f71b6ea2e06c357302fc61503p9@MAT1A
1.74e-73FFCP PHASE1:Hg19::chr20:22566089..22566097,-#_f64e0f2f71b6ea2e06c357302fc61503p6@FOXA2
2.11e-73FFCP PHASE2:Hg19::chr1:230846000..230846009,-#_73d1bf859863e9fbda5fcbbd06a8c816p@chr1:230846000..230846009, -
2.11e-73FFCP PHASE1:Hg19::chr14:94844853..94844862,-#_73d1bf859863e9fbda5fcbbd06a8c816p35@SERPINA1
2.11e-73FFCP PHASE2:Hg19::chr14:94844853..94844862,-#_73d1bf859863e9fbda5fcbbd06a8c816p35@SERPINA1
2.11e-73FFCP PHASE1:Hg19::chr1:230846000..230846009,-#_73d1bf859863e9fbda5fcbbd06a8c816p@chr1:230846000..230846009, -
1.22e-72FFCP PHASE2:Mm9::chr5:90897694..90897705,+#_c602a55c5d8e2610f6436256ddfd550fp@chr5:90897694..90897705, +
1.22e-72FFCP PHASE1:Mm9::chr5:90897694..90897705,+#_c602a55c5d8e2610f6436256ddfd550fp@chr5:90897694..90897705, +
1.97e-72FFCP PHASE2:Hg19::chr2:21256369..21256378,-#_eeeb8d6472a067bb69b9c09cb1539beep@chr2:21256369..21256378, -
1.97e-72FFCP PHASE1:Hg19::chr2:21232865..21232870,-#_eeeb8d6472a067bb69b9c09cb1539beep10@BC172787
1.97e-72FFCP PHASE1:Hg19::chr2:21256369..21256378,-#_eeeb8d6472a067bb69b9c09cb1539beep@chr2:21256369..21256378, -
1.97e-72FFCP PHASE1:Hg19::chr10:7763609..7763619,+#_eeeb8d6472a067bb69b9c09cb1539beep@chr10:7763609..7763619, +
1.97e-72FFCP PHASE1:Hg19::chr2:44066386..44066398,-#_eeeb8d6472a067bb69b9c09cb1539beep6@ABCG5
1.97e-72FFCP PHASE2:Hg19::chr10:7763609..7763619,+#_eeeb8d6472a067bb69b9c09cb1539beep@chr10:7763609..7763619, +
1.97e-72FFCP PHASE1:Hg19::chr12:57828432..57828442,+#_eeeb8d6472a067bb69b9c09cb1539beep7@INHBC
1.97e-72FFCP PHASE2:Hg19::chr2:21230675..21230682,-#_eeeb8d6472a067bb69b9c09cb1539beep51@APOB
1.97e-72FFCP PHASE1:Hg19::chr2:21234502..21234510,-#_eeeb8d6472a067bb69b9c09cb1539beep43@APOB
1.97e-72FFCP PHASE2:Hg19::chr2:21232865..21232870,-#_eeeb8d6472a067bb69b9c09cb1539beep10@BC172787
1.97e-72FFCP PHASE2:Hg19::chr2:21234502..21234510,-#_eeeb8d6472a067bb69b9c09cb1539beep43@APOB
1.97e-72FFCP PHASE2:Hg19::chr2:20793103..20793113,-#_eeeb8d6472a067bb69b9c09cb1539beep@chr2:20793103..20793113, -
1.97e-72FFCP PHASE2:Hg19::chr17:7082861..7082882,-#_eeeb8d6472a067bb69b9c09cb1539beep9@ASGR1
1.97e-72FFCP PHASE2:Hg19::chr12:57828432..57828442,+#_eeeb8d6472a067bb69b9c09cb1539beep7@INHBC
1.97e-72FFCP PHASE1:Hg19::chr2:20793103..20793113,-#_eeeb8d6472a067bb69b9c09cb1539beep@chr2:20793103..20793113, -
1.97e-72FFCP PHASE1:Hg19::chr17:7082861..7082882,-#_eeeb8d6472a067bb69b9c09cb1539beep9@ASGR1
1.97e-72FFCP PHASE1:Hg19::chr2:21231676..21231681,-#_eeeb8d6472a067bb69b9c09cb1539beep75@APOB
1.97e-72FFCP PHASE1:Hg19::chr2:21230675..21230682,-#_eeeb8d6472a067bb69b9c09cb1539beep51@APOB
1.97e-72FFCP PHASE2:Hg19::chr2:44066386..44066398,-#_eeeb8d6472a067bb69b9c09cb1539beep6@ABCG5
1.97e-72FFCP PHASE2:Hg19::chr2:21231676..21231681,-#_eeeb8d6472a067bb69b9c09cb1539beep75@APOB
2.2e-72FFCP PHASE1:Mm9::chr19:25169885..25169900,+#_43cb0274cc05e2732f5599922da94d7fp@chr19:25169885..25169900, +
2.2e-72FFCP PHASE2:Mm9::chr19:25169885..25169900,+#_43cb0274cc05e2732f5599922da94d7fp@chr19:25169885..25169900, +
5.51e-71FFCP PHASE1:Mm9::chr7:121912281..121912295,+#_f45a0fbfb84934bcf867e845cf2382adp6@Insc
5.51e-71FFCP PHASE2:Mm9::chr7:121912281..121912295,+#_f45a0fbfb84934bcf867e845cf2382adp6@Insc
1.05e-70FFCP PHASE2:Hg19::chr12:100867695..100867706,+#_2a2992d478fef37a16240fe4a31e9c92p6@NR1H4
1.05e-70FFCP PHASE1:Hg19::chr12:100867695..100867706,+#_2a2992d478fef37a16240fe4a31e9c92p6@NR1H4
1.7e-70FFCP PHASE1:Mm9::chr8:131012371..131012382,-#_b89d1c554bae80a7863b7f1ed66e8eafp2@uc009nzu.1
1.7e-70FFCP PHASE2:Mm9::chr8:131012371..131012382,-#_b89d1c554bae80a7863b7f1ed66e8eafp2@uc009nzu.1
8.65e-70FFCP PHASE1:Hg19::chr17:7082560..7082572,-#_f62b91d2a6632a53b456486d3d55dfb9p4@ASGR1
8.65e-70FFCP PHASE2:Hg19::chr17:7082560..7082572,-#_f62b91d2a6632a53b456486d3d55dfb9p4@ASGR1
1.02e-69FFCP PHASE2:Hg19::chr10:72083665..72083701,-#_b7d9d00e037279e52401c047166e74cep2@LRRC20
1.02e-69FFCP PHASE1:Hg19::chr10:72083665..72083701,-#_b7d9d00e037279e52401c047166e74cep2@LRRC20
1.64e-69FFCP PHASE2:Hg19::chr1:11107289..11107304,-#_05816978c68a93407cd1a515e30ef3bcp1@MASP2
1.64e-69FFCP PHASE2:Hg19::chr9:116838918..116838930,-#_05816978c68a93407cd1a515e30ef3bcp@chr9:116838918..116838930, -
1.64e-69FFCP PHASE1:Hg19::chr9:116838918..116838930,-#_05816978c68a93407cd1a515e30ef3bcp@chr9:116838918..116838930, -
1.64e-69FFCP PHASE1:Hg19::chr1:11107289..11107304,-#_05816978c68a93407cd1a515e30ef3bcp1@MASP2
2.08e-69FFCP PHASE1:Hg19::chr3:197300199..197300219,-#_99b0fc5793adc9497667c98618f54f1ep2@BDH1
2.08e-69FFCP PHASE2:Hg19::chr3:197300199..197300219,-#_99b0fc5793adc9497667c98618f54f1ep2@BDH1
2.25e-69FFCP PHASE2:Hg19::chr4:155528001..155528060,-#_ac6749c2880707bb732188549206dacbp@chr4:155528001..155528060, -
2.25e-69FFCP PHASE2:Hg19::chr19:45430057..45430062,+#_ac6749c2880707bb732188549206dacbp1@APOC1P1
2.25e-69FFCP PHASE1:Hg19::chr9:116838988..116838999,-#_ac6749c2880707bb732188549206dacbp@chr9:116838988..116838999, -
2.25e-69FFCP PHASE2:Hg19::chr9:116838988..116838999,-#_ac6749c2880707bb732188549206dacbp@chr9:116838988..116838999, -
2.25e-69FFCP PHASE1:Hg19::chr4:155528001..155528060,-#_ac6749c2880707bb732188549206dacbp@chr4:155528001..155528060, -
2.25e-69FFCP PHASE1:Hg19::chr19:45430057..45430062,+#_ac6749c2880707bb732188549206dacbp1@APOC1P1
2.64e-69FFCP PHASE2:Hg19::chr17:7017634..7017649,-#_f8b76ea88265f33f12644e01fca7fe58p7@ASGR2
2.64e-69FFCP PHASE1:Hg19::chr17:7017634..7017649,-#_f8b76ea88265f33f12644e01fca7fe58p7@ASGR2
2.64e-69FFCP PHASE1:Hg19::chr11:116662593..116662620,-#_f8b76ea88265f33f12644e01fca7fe58p1@APOA5
2.64e-69FFCP PHASE2:Hg19::chr11:116662593..116662620,-#_f8b76ea88265f33f12644e01fca7fe58p1@APOA5
1.28e-68FFCP PHASE2:Mm9::chr13:94407586..94407604,-#_961bdaf80b6db8bbf4918269e134caffp5@Bhmt
1.28e-68FFCP PHASE1:Mm9::chr13:94407586..94407604,-#_961bdaf80b6db8bbf4918269e134caffp5@Bhmt
2.72e-68FFCP PHASE2:Mm9::chr1:162917234..162917248,+#_09ada9f3fd404b482e07b3e38fbdccfdp@chr1:162917234..162917248, +
2.72e-68FFCP PHASE1:Mm9::chr1:162917234..162917248,+#_09ada9f3fd404b482e07b3e38fbdccfdp@chr1:162917234..162917248, +
3.5e-68FFCP PHASE2:Mm9::chr9:110892216..110892232,-#_36d7352b513a6a8aa912f7f7c2a67482p1@Rtp3
3.5e-68FFCP PHASE1:Mm9::chr9:110892216..110892232,-#_36d7352b513a6a8aa912f7f7c2a67482p1@Rtp3
2.47e-67FFCP PHASE2:Mm9::chr9:110892239..110892252,-#_797ba6107968b7002c80fdee230627eap2@Rtp3
2.47e-67FFCP PHASE2:Mm9::chr7:112744083..112744109,-#_797ba6107968b7002c80fdee230627eap@chr7:112744083..112744109, -
2.47e-67FFCP PHASE1:Mm9::chr7:112744083..112744109,-#_797ba6107968b7002c80fdee230627eap@chr7:112744083..112744109, -
2.47e-67FFCP PHASE1:Mm9::chr9:110892239..110892252,-#_797ba6107968b7002c80fdee230627eap2@Rtp3
6.55e-67FFCP PHASE2:Mm9::chr13:23928766..23928779,+#_0c940e5c681dce3ff5096c5d46e00020p@chr13:23928766..23928779, +
6.55e-67FFCP PHASE1:Mm9::chr13:23928766..23928779,+#_0c940e5c681dce3ff5096c5d46e00020p@chr13:23928766..23928779, +
7.85e-67FFCP PHASE2:Mm9::chr7:28237436..28237488,+#_bedec4a3c95750834ab4831c76a98a82p3@Blvrb
7.85e-67FFCP PHASE1:Mm9::chr7:28237436..28237488,+#_bedec4a3c95750834ab4831c76a98a82p3@Blvrb
1.58e-66FFCP PHASE2:Mm9::chr12:105004018..105004046,-#_bd6219e19f1b00d92fe63d7de887e2f5p@chr12:105004018..105004046, -
1.58e-66FFCP PHASE1:Mm9::chr12:105004018..105004046,-#_bd6219e19f1b00d92fe63d7de887e2f5p@chr12:105004018..105004046, -
1.58e-66FFCP PHASE1:Mm9::chr2:10041210..10041222,-#_bd6219e19f1b00d92fe63d7de887e2f5p@chr2:10041210..10041222, -
1.58e-66FFCP PHASE1:Mm9::chr16:22894900..22894910,+#_bd6219e19f1b00d92fe63d7de887e2f5p@chr16:22894900..22894910, +
1.58e-66FFCP PHASE2:Mm9::chr2:10041210..10041222,-#_bd6219e19f1b00d92fe63d7de887e2f5p@chr2:10041210..10041222, -
1.58e-66FFCP PHASE2:Mm9::chr6:128436166..128436185,-#_bd6219e19f1b00d92fe63d7de887e2f5p@chr6:128436166..128436185, -
1.58e-66FFCP PHASE1:Mm9::chr16:22898981..22898988,-#_bd6219e19f1b00d92fe63d7de887e2f5p@chr16:22898981..22898988, -
1.58e-66FFCP PHASE2:Mm9::chr16:22898981..22898988,-#_bd6219e19f1b00d92fe63d7de887e2f5p@chr16:22898981..22898988, -

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