UBERON:0009856: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0009856 | |||
|is_a=UBERON:0000061 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=sac | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="diverticulum" RELATED [];;"pouch" EXACT [] | ||
|union_of= | |||
|xref= | |||
}} | }} | ||
Latest revision as of 18:06, 12 September 2014
| Name: | sac |
|---|---|
| Namespace: | FANTOM |
| Synonyms: |
"diverticulum" RELATED [] "pouch" EXACT [] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000061(anatomical structure) |
|---|
Children
| is a: | UBERON:0007499 (epithelial sac),UBERON:0009854 (digestive tract diverticulum) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10189-103D9 (appendix, adult)
- 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
- 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
- 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
- 11510-119G7 (Alveolar Epithelial Cells, donor1)
- 11671-122G6 (Alveolar Epithelial Cells, donor3)
- 37-13H4 (cecum, adult)
Mouse (Mus musculus)
- 10189-103D9 (appendix, adult)
- 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
- 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
- 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
- 11510-119G7 (Alveolar Epithelial Cells, donor1)
- 11671-122G6 (Alveolar Epithelial Cells, donor3)
- 37-13H4 (cecum, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009856 (sac), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.45e-69 | FFCP PHASE2:Mm9::chr5:90897694..90897705,+#_f663387f6734ca9a11294f6f7c314f40 | p@chr5:90897694..90897705, + |
| 2.45e-69 | FFCP PHASE1:Mm9::chr5:90897694..90897705,+#_f663387f6734ca9a11294f6f7c314f40 | p@chr5:90897694..90897705, + |
| 4.3e-69 | FFCP PHASE1:Mm9::chr19:25169885..25169900,+#_ec9fd45f634b8f62ab5ee3fe1acf0ed3 | p@chr19:25169885..25169900, + |
| 4.3e-69 | FFCP PHASE2:Mm9::chr19:25169885..25169900,+#_ec9fd45f634b8f62ab5ee3fe1acf0ed3 | p@chr19:25169885..25169900, + |
| 8.55e-68 | FFCP PHASE1:Mm9::chr7:121912281..121912295,+#_578f8bff4cbcd07b0e5c9bcb7de32233 | p6@Insc |
| 8.55e-68 | FFCP PHASE2:Mm9::chr7:121912281..121912295,+#_578f8bff4cbcd07b0e5c9bcb7de32233 | p6@Insc |
| 2.4e-67 | FFCP PHASE1:Mm9::chr8:131012371..131012382,-#_9e495edc6454bd5638a4dacb2de408c8 | p2@uc009nzu.1 |
| 2.4e-67 | FFCP PHASE2:Mm9::chr8:131012371..131012382,-#_9e495edc6454bd5638a4dacb2de408c8 | p2@uc009nzu.1 |
| 1.68e-65 | FFCP PHASE2:Mm9::chr13:94407586..94407604,-#_affaecee27683dca988ecbebe09b4ca1 | p5@Bhmt |
| 1.68e-65 | FFCP PHASE1:Mm9::chr13:94407586..94407604,-#_affaecee27683dca988ecbebe09b4ca1 | p5@Bhmt |
| 3.44e-65 | FFCP PHASE2:Mm9::chr1:162917234..162917248,+#_540f8594579ff17237269b0d4f3566cb | p@chr1:162917234..162917248, + |
| 3.44e-65 | FFCP PHASE1:Mm9::chr1:162917234..162917248,+#_540f8594579ff17237269b0d4f3566cb | p@chr1:162917234..162917248, + |
| 4.38e-65 | FFCP PHASE2:Mm9::chr9:110892216..110892232,-#_56ed8d214c795457cfcf0b9f3b156441 | p1@Rtp3 |
| 4.38e-65 | FFCP PHASE1:Mm9::chr9:110892216..110892232,-#_56ed8d214c795457cfcf0b9f3b156441 | p1@Rtp3 |
| 2.72e-64 | FFCP PHASE2:Mm9::chr7:112744083..112744109,-#_2af9b905348cbcb7d583ff0e154d7964 | p@chr7:112744083..112744109, - |
| 2.72e-64 | FFCP PHASE2:Mm9::chr9:110892239..110892252,-#_2af9b905348cbcb7d583ff0e154d7964 | p2@Rtp3 |
| 2.72e-64 | FFCP PHASE1:Mm9::chr7:112744083..112744109,-#_2af9b905348cbcb7d583ff0e154d7964 | p@chr7:112744083..112744109, - |
| 2.72e-64 | FFCP PHASE1:Mm9::chr9:110892239..110892252,-#_2af9b905348cbcb7d583ff0e154d7964 | p2@Rtp3 |
| 6.61e-64 | FFCP PHASE1:Mm9::chr13:23928766..23928779,+#_47bd40a7a06a4c5742c3b093d997de57 | p@chr13:23928766..23928779, + |
| 6.61e-64 | FFCP PHASE2:Mm9::chr13:23928766..23928779,+#_47bd40a7a06a4c5742c3b093d997de57 | p@chr13:23928766..23928779, + |
| 7.86e-64 | FFCP PHASE1:Mm9::chr7:28237436..28237488,+#_a8ff354e7c78f2d638055b2fc5af9301 | p3@Blvrb |
| 7.86e-64 | FFCP PHASE2:Mm9::chr7:28237436..28237488,+#_a8ff354e7c78f2d638055b2fc5af9301 | p3@Blvrb |
| 1.46e-63 | FFCP PHASE1:Mm9::chr12:105004018..105004046,-#_c9b3d95c1e119cd8060fa01e7619b31b | p@chr12:105004018..105004046, - |
| 1.46e-63 | FFCP PHASE2:Mm9::chr6:128436166..128436185,-#_c9b3d95c1e119cd8060fa01e7619b31b | p@chr6:128436166..128436185, - |
| 1.46e-63 | FFCP PHASE1:Mm9::chr6:128436166..128436185,-#_c9b3d95c1e119cd8060fa01e7619b31b | p@chr6:128436166..128436185, - |
| 1.46e-63 | FFCP PHASE1:Mm9::chr16:22894900..22894910,+#_c9b3d95c1e119cd8060fa01e7619b31b | p@chr16:22894900..22894910, + |
| 1.46e-63 | FFCP PHASE1:Mm9::chr16:22898981..22898988,-#_c9b3d95c1e119cd8060fa01e7619b31b | p@chr16:22898981..22898988, - |
| 1.46e-63 | FFCP PHASE2:Mm9::chr16:22894900..22894910,+#_c9b3d95c1e119cd8060fa01e7619b31b | p@chr16:22894900..22894910, + |
| 1.46e-63 | FFCP PHASE2:Mm9::chr12:105004018..105004046,-#_c9b3d95c1e119cd8060fa01e7619b31b | p@chr12:105004018..105004046, - |
| 1.46e-63 | FFCP PHASE2:Mm9::chr2:10041210..10041222,-#_c9b3d95c1e119cd8060fa01e7619b31b | p@chr2:10041210..10041222, - |
| 1.46e-63 | FFCP PHASE2:Mm9::chr16:22898981..22898988,-#_c9b3d95c1e119cd8060fa01e7619b31b | p@chr16:22898981..22898988, - |
| 1.46e-63 | FFCP PHASE1:Mm9::chr2:10041210..10041222,-#_c9b3d95c1e119cd8060fa01e7619b31b | p@chr2:10041210..10041222, - |
| 1.0e-61 | FFCP PHASE1:Mm9::chr1:173155793..173155841,+#_679f0c21228b449ff9c84206f110d832 | p@chr1:173155793..173155841, + |
| 1.0e-61 | FFCP PHASE2:Mm9::chr1:173155793..173155841,+#_679f0c21228b449ff9c84206f110d832 | p@chr1:173155793..173155841, + |
| 1.17e-61 | FFCP PHASE2:Mm9::chr17:12584645..12584657,+#_6ffcf89492a559447352992f8b3547f9 | p@chr17:12584645..12584657, + |
| 1.17e-61 | FFCP PHASE1:Mm9::chr17:12584645..12584657,+#_6ffcf89492a559447352992f8b3547f9 | p@chr17:12584645..12584657, + |
| 1.27e-61 | FFCP PHASE1:Mm9::chr17:12588483..12588503,+#_f7c0d4dea9322547c21ddb1f326aad78 | p@chr17:12588483..12588503, + |
| 1.27e-61 | FFCP PHASE2:Mm9::chr17:12588483..12588503,+#_f7c0d4dea9322547c21ddb1f326aad78 | p@chr17:12588483..12588503, + |
| 1.38e-61 | FFCP PHASE1:Mm9::chr1:166179426..166179437,+#_907bb2dd695fd75e828a065e907c5417 | p@chr1:166179426..166179437, + |
| 1.38e-61 | FFCP PHASE2:Mm9::chr1:166179426..166179437,+#_907bb2dd695fd75e828a065e907c5417 | p@chr1:166179426..166179437, + |
| 1.57e-61 | FFCP PHASE2:Mm9::chr8:34917332..34917357,-#_59df93ea7e341294e3905143f59365cd | p@chr8:34917332..34917357, - |
| 1.57e-61 | FFCP PHASE1:Mm9::chr8:34917332..34917357,-#_59df93ea7e341294e3905143f59365cd | p@chr8:34917332..34917357, - |
| 3.55e-61 | FFCP PHASE1:Mm9::chr19:38191263..38191291,-#_7e2b93f2424ef072e22a8054c8b6cac2 | p@chr19:38191263..38191291, - |
| 3.55e-61 | FFCP PHASE2:Mm9::chr19:38191263..38191291,-#_7e2b93f2424ef072e22a8054c8b6cac2 | p@chr19:38191263..38191291, - |
| 7.0e-61 | FFCP PHASE1:Mm9::chr7:121912266..121912277,+#_0dbbb7d4098f8324711ca709f6c73484 | p8@Insc |
| 7.0e-61 | FFCP PHASE2:Mm9::chr7:121912266..121912277,+#_0dbbb7d4098f8324711ca709f6c73484 | p8@Insc |
| 8.25e-61 | FFCP PHASE2:Mm9::chr5:90893974..90893978,+#_4f01c982f69dd745dc166bf2514a4f1c | p@chr5:90893974..90893978, + |
| 8.25e-61 | FFCP PHASE1:Mm9::chr5:90893974..90893978,+#_4f01c982f69dd745dc166bf2514a4f1c | p@chr5:90893974..90893978, + |
| 1.24e-60 | FFCP PHASE1:Mm9::chr8:131012475..131012492,-#_0468c54337dd37a402ce1cca9a271f93 | p1@uc009nzu.1 |
| 1.24e-60 | FFCP PHASE2:Mm9::chr8:131012475..131012492,-#_0468c54337dd37a402ce1cca9a271f93 | p1@uc009nzu.1 |
| 1.35e-60 | FFCP PHASE2:Mm9::chr8:46380208..46380217,-#_8ad18dbb75f38071eab9baf1c890e8a2 | p3@Klkb1 |
| 1.35e-60 | FFCP PHASE1:Mm9::chr8:46380208..46380217,-#_8ad18dbb75f38071eab9baf1c890e8a2 | p3@Klkb1 |
| 1.47e-60 | FFCP PHASE1:Mm9::chr3:57191661..57191672,-#_5fb3f4d5cdae623d497b2ab3ac80120a | p@chr3:57191661..57191672, - |
| 1.47e-60 | FFCP PHASE2:Mm9::chr3:57191661..57191672,-#_5fb3f4d5cdae623d497b2ab3ac80120a | p@chr3:57191661..57191672, - |
| 1.59e-60 | FFCP PHASE2:Mm9::chr3:82814412..82814431,+#_1b384c940cb0e3d540c7b8cd5b7f9a35 | p@chr3:82814412..82814431, + |
| 1.59e-60 | FFCP PHASE1:Mm9::chr3:82814412..82814431,+#_1b384c940cb0e3d540c7b8cd5b7f9a35 | p@chr3:82814412..82814431, + |
| 1.67e-60 | FFCP PHASE1:Hg19::chr12:100867777..100867788,+#_96d1e46d88c2e756cf00b9c4e1b05025 | p5@NR1H4 |
| 1.67e-60 | FFCP PHASE2:Hg19::chr12:100867777..100867788,+#_96d1e46d88c2e756cf00b9c4e1b05025 | p5@NR1H4 |
| 1.76e-60 | FFCP PHASE2:Mm9::chr17:12583153..12583171,+#_472802855254f07a1228e5fbf3d068a4 | p@chr17:12583153..12583171, + |
| 1.76e-60 | FFCP PHASE1:Mm9::chr17:12583153..12583171,+#_472802855254f07a1228e5fbf3d068a4 | p@chr17:12583153..12583171, + |
| 1.93e-60 | FFCP PHASE1:Hg19::chr2:21233797..21233804,-#_adef1ca2ca8d30b8b367809bb60cd999 | p58@APOB |
| 1.93e-60 | FFCP PHASE2:Hg19::chr2:21233797..21233804,-#_adef1ca2ca8d30b8b367809bb60cd999 | p58@APOB |
| 1.93e-60 | FFCP PHASE1:Hg19::chr8:144417558..144417572,-#_adef1ca2ca8d30b8b367809bb60cd999 | p7@TOP1MT |
| 1.93e-60 | FFCP PHASE2:Hg19::chr8:144417558..144417572,-#_adef1ca2ca8d30b8b367809bb60cd999 | p7@TOP1MT |
| 2.6e-60 | FFCP PHASE2:Mm9::chr5:93000570..93000589,+#_ecb652347853c907994944afab0a5bab | p3@Fam47e |
| 2.6e-60 | FFCP PHASE1:Mm9::chr5:93000570..93000589,+#_ecb652347853c907994944afab0a5bab | p3@Fam47e |
| 3.45e-60 | FFCP PHASE1:Mm9::chr3:82835513..82835525,+#_991834185ba67faa25cd4d18eb46abec | p@chr3:82835513..82835525, + |
| 3.45e-60 | FFCP PHASE2:Mm9::chr16:22895330..22895339,-#_991834185ba67faa25cd4d18eb46abec | p@chr16:22895330..22895339, - |
| 3.45e-60 | FFCP PHASE2:Mm9::chr16:23449901..23449906,-#_991834185ba67faa25cd4d18eb46abec | p@chr16:23449901..23449906, - |
| 3.45e-60 | FFCP PHASE2:Mm9::chr8:92849825..92849837,-#_991834185ba67faa25cd4d18eb46abec | p@chr8:92849825..92849837, - |
| 3.45e-60 | FFCP PHASE2:Mm9::chr15:77605636..77605639,+#_991834185ba67faa25cd4d18eb46abec | p@chr15:77605636..77605639, + |
| 3.45e-60 | FFCP PHASE1:Mm9::chr15:77605636..77605639,+#_991834185ba67faa25cd4d18eb46abec | p@chr15:77605636..77605639, + |
| 3.45e-60 | FFCP PHASE2:Mm9::chr3:82835513..82835525,+#_991834185ba67faa25cd4d18eb46abec | p@chr3:82835513..82835525, + |
| 3.45e-60 | FFCP PHASE1:Mm9::chr16:22895330..22895339,-#_991834185ba67faa25cd4d18eb46abec | p@chr16:22895330..22895339, - |
| 3.45e-60 | FFCP PHASE1:Mm9::chr8:92849825..92849837,-#_991834185ba67faa25cd4d18eb46abec | p@chr8:92849825..92849837, - |
| 3.45e-60 | FFCP PHASE1:Mm9::chr16:23449901..23449906,-#_991834185ba67faa25cd4d18eb46abec | p@chr16:23449901..23449906, - |
| 4.1e-60 | FFCP PHASE1:Mm9::chr16:22896674..22896687,-#_a20e1df8f63ec76cc00ba8c635754c7e | p@chr16:22896674..22896687, - |
| 4.1e-60 | FFCP PHASE2:Mm9::chr16:22896674..22896687,-#_a20e1df8f63ec76cc00ba8c635754c7e | p@chr16:22896674..22896687, - |
| 4.47e-60 | FFCP PHASE1:Mm9::chr17:12577256..12577270,+#_a3bf1540640613720ee9b25c3e776191 | p@chr17:12577256..12577270, + |
| 4.47e-60 | FFCP PHASE2:Mm9::chr17:12577256..12577270,+#_a3bf1540640613720ee9b25c3e776191 | p@chr17:12577256..12577270, + |
| 5.3e-60 | FFCP PHASE2:Mm9::chr17:32822530..32822541,+#_7b03115fdc30e82245a519a54370fd67 | p2@Cyp4f15 |
| 5.3e-60 | FFCP PHASE1:Mm9::chr17:32822530..32822541,+#_7b03115fdc30e82245a519a54370fd67 | p2@Cyp4f15 |
| 7.85e-60 | FFCP PHASE2:Mm9::chr11:60622345..60622377,-#_fb34de1fadf4e1415ba0a053b692f1e3 | p@chr11:60622345..60622377, - |
| 7.85e-60 | FFCP PHASE1:Mm9::chr11:60622345..60622377,-#_fb34de1fadf4e1415ba0a053b692f1e3 | p@chr11:60622345..60622377, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr6:128438012..128438027,-#_d6e1e8dfd7db2774ee76c9cab855002d | p@chr6:128438012..128438027, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr3:82847318..82847329,-#_d6e1e8dfd7db2774ee76c9cab855002d | p@chr3:82847318..82847329, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr12:105002005..105002050,-#_d6e1e8dfd7db2774ee76c9cab855002d | p@chr12:105002005..105002050, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr11:46512551..46512577,-#_d6e1e8dfd7db2774ee76c9cab855002d | p5@Timd2 |
| 8.52e-60 | FFCP PHASE2:Mm9::chr16:22899322..22899331,+#_d6e1e8dfd7db2774ee76c9cab855002d | p@chr16:22899322..22899331, + |
| 8.52e-60 | FFCP PHASE2:Mm9::chr6:11948347..11948351,-#_d6e1e8dfd7db2774ee76c9cab855002d | p@chr6:11948347..11948351, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr6:128436196..128436215,-#_d6e1e8dfd7db2774ee76c9cab855002d | p@chr6:128436196..128436215, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr16:22899236..22899246,+#_d6e1e8dfd7db2774ee76c9cab855002d | p@chr16:22899236..22899246, + |
| 8.52e-60 | FFCP PHASE2:Mm9::chr12:105066241..105066272,-#_d6e1e8dfd7db2774ee76c9cab855002d | p1@Serpina1b |
| 8.52e-60 | FFCP PHASE1:Mm9::chr16:22895286..22895297,-#_d6e1e8dfd7db2774ee76c9cab855002d | p@chr16:22895286..22895297, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr12:105003025..105003036,-#_d6e1e8dfd7db2774ee76c9cab855002d | p@chr12:105003025..105003036, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr11:46512551..46512577,-#_d6e1e8dfd7db2774ee76c9cab855002d | p5@Timd2 |
| 8.52e-60 | FFCP PHASE2:Mm9::chr16:22895286..22895297,-#_d6e1e8dfd7db2774ee76c9cab855002d | p@chr16:22895286..22895297, - |
| 8.52e-60 | FFCP PHASE1:Mm9::chr6:11948347..11948351,-#_d6e1e8dfd7db2774ee76c9cab855002d | p@chr6:11948347..11948351, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr6:128436196..128436215,-#_d6e1e8dfd7db2774ee76c9cab855002d | p@chr6:128436196..128436215, - |
| 8.52e-60 | FFCP PHASE2:Mm9::chr12:105003025..105003036,-#_d6e1e8dfd7db2774ee76c9cab855002d | p@chr12:105003025..105003036, - |
