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{{UBERON
{{UBERON
|id=UBERON:0010042
|alt_id=
|name=1st arch mesenchyme
|namespace=
|def=
|xref=EMAPA:16128
|is_a=UBERON:0009494
|synonym="mesenchyme of 1st arch" EXACT [EMAPA:16128]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010042
|is_a=UBERON:0009494
|is_obsolete=
|located_in=
|located_in=
|name=1st arch mesenchyme
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0004362
|part_of=UBERON:0004362
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="mesenchyme of 1st arch" EXACT [EMAPA:16128]
|union_of=
|xref=EMAPA:16128
}}
}}

Latest revision as of 18:07, 12 September 2014

Name:1st arch mesenchyme
Namespace:FANTOM
Xrefs:
links:
EMAPA:16128
Synonyms: "mesenchyme of 1st arch" EXACT [EMAPA:16128]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0009494(pharyngeal arch mesenchymal region)
part_of:UBERON:0004362(pharyngeal arch 1)



Children

is a:UBERON:0010045 (1st arch maxillary mesenchyme),UBERON:0010259 (1st arch mesenchyme from neural crest)
part of:UBERON:0010259 (1st arch mesenchyme from neural crest)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010042 (1st arch mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_7e0f807909cc0376a8244f4f1006f03dp14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_7e0f807909cc0376a8244f4f1006f03dp14@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_a3a07980ee67b8f8327689c151c1173ep11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_a3a07980ee67b8f8327689c151c1173ep13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_a3a07980ee67b8f8327689c151c1173ep@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_a3a07980ee67b8f8327689c151c1173ep12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_a3a07980ee67b8f8327689c151c1173ep11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_a3a07980ee67b8f8327689c151c1173ep12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_a3a07980ee67b8f8327689c151c1173ep@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_a3a07980ee67b8f8327689c151c1173ep13@C17orf67
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_0999efe01d34115bddbc76c653cccec4p14@MAB21L2
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_0999efe01d34115bddbc76c653cccec4p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_0999efe01d34115bddbc76c653cccec4p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_0999efe01d34115bddbc76c653cccec4p14@MAB21L2
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_0fe39881f645abcabad83c268ec7071dp@chr4:151505582..151505614, +
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_0fe39881f645abcabad83c268ec7071dp@chr4:151505582..151505614, +
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_c3a8a015c7b1f73b699931326c12c7cdp17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_c3a8a015c7b1f73b699931326c12c7cdp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_c3a8a015c7b1f73b699931326c12c7cdp9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_c3a8a015c7b1f73b699931326c12c7cdp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_c3a8a015c7b1f73b699931326c12c7cdp9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_c3a8a015c7b1f73b699931326c12c7cdp17@RSRC1
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_5e1875384b43ac0c65114e5ea004ef3ap@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_5e1875384b43ac0c65114e5ea004ef3ap@chr8:57802672..57802682, -
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_9c9e32a4cdabd1289ef53937b694973ep@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_9c9e32a4cdabd1289ef53937b694973ep1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_9c9e32a4cdabd1289ef53937b694973ep@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_9c9e32a4cdabd1289ef53937b694973ep1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_9c9e32a4cdabd1289ef53937b694973ep7@ALX1
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_9c9e32a4cdabd1289ef53937b694973ep7@ALX1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_de3b2a2b1969b5a66a2e5bd94dc1fabbp@chr2:33519090..33519092, +
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_de3b2a2b1969b5a66a2e5bd94dc1fabbp23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_de3b2a2b1969b5a66a2e5bd94dc1fabbp@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_de3b2a2b1969b5a66a2e5bd94dc1fabbp23@FLT1
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_07a473a501c39d29f7f441a7508a6ee9p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_07a473a501c39d29f7f441a7508a6ee9p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_07a473a501c39d29f7f441a7508a6ee9p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_07a473a501c39d29f7f441a7508a6ee9p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_07a473a501c39d29f7f441a7508a6ee9p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_07a473a501c39d29f7f441a7508a6ee9p@chr8:57353779..57353790, -
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_3f11ed3c58d0afe0fdae7d30661e8e55p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_3f11ed3c58d0afe0fdae7d30661e8e55p8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_3f11ed3c58d0afe0fdae7d30661e8e55p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_3f11ed3c58d0afe0fdae7d30661e8e55p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_3f11ed3c58d0afe0fdae7d30661e8e55p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_3f11ed3c58d0afe0fdae7d30661e8e55p8@LHX8
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_9311f2bb5ad134fd324dcdeb8ab51eb6p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_9311f2bb5ad134fd324dcdeb8ab51eb6p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_9311f2bb5ad134fd324dcdeb8ab51eb6p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_9311f2bb5ad134fd324dcdeb8ab51eb6p@chr5:75912831..75912842, -
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_7a3614ccdd2c09b4d947851e60e3eaa8p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_7a3614ccdd2c09b4d947851e60e3eaa8p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_7a3614ccdd2c09b4d947851e60e3eaa8p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_7a3614ccdd2c09b4d947851e60e3eaa8p@chr9:125165007..125165016, +
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_14276d677dd73bd0d1a50812ab10f24dp4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_14276d677dd73bd0d1a50812ab10f24dp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_14276d677dd73bd0d1a50812ab10f24dp5@PENK
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_14276d677dd73bd0d1a50812ab10f24dp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_14276d677dd73bd0d1a50812ab10f24dp5@PENK
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_14276d677dd73bd0d1a50812ab10f24dp4@CPZ
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_08c5fd27450ac46b2bb7b5086cbd9f99p9@SIX1
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_08c5fd27450ac46b2bb7b5086cbd9f99p9@SIX1
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_b6f63d1b7c5e8230ee8af7d13aea5960p@chr6:134327986..134327991, -
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_b6f63d1b7c5e8230ee8af7d13aea5960p@chr6:134327986..134327991, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_7b7faa1b7ba474fb741370a626946616p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_7b7faa1b7ba474fb741370a626946616p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_7b7faa1b7ba474fb741370a626946616p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_7b7faa1b7ba474fb741370a626946616p@chr13:58291223..58291226, +
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_a9e2807c83949cf113bbefa937a85e59p12@FBN2
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_a9e2807c83949cf113bbefa937a85e59p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_a9e2807c83949cf113bbefa937a85e59p4@PLAC1
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_a9e2807c83949cf113bbefa937a85e59p12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_a9e2807c83949cf113bbefa937a85e59p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_a9e2807c83949cf113bbefa937a85e59p4@PLAC1
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_9b0ca9acd8cc5b2ea9c25d31fa550c53p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_9b0ca9acd8cc5b2ea9c25d31fa550c53p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_9b0ca9acd8cc5b2ea9c25d31fa550c53p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_9b0ca9acd8cc5b2ea9c25d31fa550c53p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_9b0ca9acd8cc5b2ea9c25d31fa550c53p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_9b0ca9acd8cc5b2ea9c25d31fa550c53p@chr8:57354360..57354367, +
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_770e17cab2a7e2042ac2083fc13ecc74p7@SHOX2
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_770e17cab2a7e2042ac2083fc13ecc74p10@ITGA8
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_770e17cab2a7e2042ac2083fc13ecc74p10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_770e17cab2a7e2042ac2083fc13ecc74p7@SHOX2
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_4d7803013a212a4fbb92a68e4cea1c68p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_4d7803013a212a4fbb92a68e4cea1c68p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_4d7803013a212a4fbb92a68e4cea1c68p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_4d7803013a212a4fbb92a68e4cea1c68p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_4d7803013a212a4fbb92a68e4cea1c68p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_4d7803013a212a4fbb92a68e4cea1c68p@chr22:28193943..28193956, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_1186185fdfaa76173186962b4952372fp@chr1:21904551..21904569, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_1186185fdfaa76173186962b4952372fp@chr1:21904551..21904569, -
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_a94b33ec51aa4697536502689c98ddd0p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_a94b33ec51aa4697536502689c98ddd0p18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_a94b33ec51aa4697536502689c98ddd0p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_a94b33ec51aa4697536502689c98ddd0p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_a94b33ec51aa4697536502689c98ddd0p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_a94b33ec51aa4697536502689c98ddd0p18@MEF2D
4.2e-29FFCP PHASE2:Hg19::chr10:28033565..28033575,-#_b55d9562975c3185427e50e233941d81p@chr10:28033565..28033575, -
4.2e-29FFCP PHASE2:Hg19::chr1:6615468..6615485,+#_b55d9562975c3185427e50e233941d81p1@TAS1R1

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