FFCP PHASE1:Hg19::chr11:1213349..1213360,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=259bp_to_uc001lsz.2_5end | |association_with_transcript=259bp_to_uc001lsz.2_5end | ||
|cluster_id=chr11:1213349..1213360,+ | |||
|coexpression_cluster_id=C238 | |coexpression_cluster_id=C238 | ||
|description=CAGE_peak_4_at_uc001lsz.2_5end | |description=CAGE_peak_4_at_uc001lsz.2_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002379;2.62e-13;1!CL:0000047;4.83e-07;2 | |ontology_enrichment_celltype_v019=CL:0002379;2.62e-13;1!CL:0000047;4.83e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002379,2.95e-13,1 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:4929!1.95e-10!2;DOID:299!1.31e-08!25;DOID:305!4.17e-08!106 | |ontology_enrichment_disease=DOID:4929!1.95e-10!2;DOID:299!1.31e-08!25;DOID:305!4.17e-08!106 | ||
|ontology_enrichment_disease_v019=DOID:3620;2.62e-13;1!DOID:3565;2.62e-13;1!DOID:3111;4.23e-13;1!DOID:3603;4.23e-13;1!DOID:4929;4.83e-07;2 | |ontology_enrichment_disease_v019=DOID:3620;2.62e-13;1!DOID:3565;2.62e-13;1!DOID:3111;4.23e-13;1!DOID:3603;4.23e-13;1!DOID:4929;4.83e-07;2 | ||
|ontology_enrichment_disease_v019_2=DOID:3620,2.95e-13,1;DOID:3565,2.95e-13,1;DOID:3111,3.76e-13,1;DOID:3603,3.76e-13,1;DOID:4929,4.98e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0002114!3.36e-13!12;UBERON:0002075!4.88e-12!18;UBERON:0002394!8.24e-12!4;UBERON:0003928!8.24e-12!4;UBERON:0002294!1.71e-11!7;UBERON:0001173!1.71e-11!7;UBERON:0004912!1.71e-11!7;UBERON:0002108!2.34e-11!14;UBERON:0003127!5.75e-11!2;UBERON:0005409!1.73e-09!35;UBERON:0004921!3.84e-09!129;UBERON:0004185!3.84e-09!129;UBERON:0001041!4.28e-09!98;UBERON:0000077!4.35e-09!130;UBERON:0004119!1.05e-08!169;UBERON:0000925!1.05e-08!169;UBERON:0006595!1.05e-08!169;UBERON:0001264!5.54e-08!10;UBERON:0003922!5.54e-08!10;UBERON:0003923!5.54e-08!10;UBERON:0003924!5.54e-08!10;UBERON:0003921!5.54e-08!10;UBERON:0001007!6.87e-08!155;UBERON:0001555!6.87e-08!155;UBERON:0007026!6.87e-08!155;UBERON:0001045!2.92e-07!11;UBERON:0000466!2.94e-07!126 | |ontology_enrichment_uberon=UBERON:0002114!3.36e-13!12;UBERON:0002075!4.88e-12!18;UBERON:0002394!8.24e-12!4;UBERON:0003928!8.24e-12!4;UBERON:0002294!1.71e-11!7;UBERON:0001173!1.71e-11!7;UBERON:0004912!1.71e-11!7;UBERON:0002108!2.34e-11!14;UBERON:0003127!5.75e-11!2;UBERON:0005409!1.73e-09!35;UBERON:0004921!3.84e-09!129;UBERON:0004185!3.84e-09!129;UBERON:0001041!4.28e-09!98;UBERON:0000077!4.35e-09!130;UBERON:0004119!1.05e-08!169;UBERON:0000925!1.05e-08!169;UBERON:0006595!1.05e-08!169;UBERON:0001264!5.54e-08!10;UBERON:0003922!5.54e-08!10;UBERON:0003923!5.54e-08!10;UBERON:0003924!5.54e-08!10;UBERON:0003921!5.54e-08!10;UBERON:0001007!6.87e-08!155;UBERON:0001555!6.87e-08!155;UBERON:0007026!6.87e-08!155;UBERON:0001045!2.92e-07!11;UBERON:0000466!2.94e-07!126 | ||
|ontology_enrichment_uberon_v019=UBERON:0002394;2.52e-26;4!UBERON:0003928;2.52e-26;4!UBERON:0002114;1.13e-16;2!UBERON:0002294;2.43e-15;7!UBERON:0001173;2.43e-15;7!UBERON:0002171;4.23e-13;1!UBERON:0006518;4.23e-13;1!UBERON:0008949;4.23e-13;1!UBERON:0000101;4.23e-13;1!UBERON:0002167;4.23e-13;1!UBERON:0004913;8.15e-13;1!UBERON:0003703;8.15e-13;1!UBERON:0001174;8.15e-13;1!UBERON:0004914;8.15e-13;1!UBERON:0000058;6.41e-11;10!UBERON:0002108;2.19e-10;4!UBERON:0003127;2.74e-07;2 | |ontology_enrichment_uberon_v019=UBERON:0002394;2.52e-26;4!UBERON:0003928;2.52e-26;4!UBERON:0002114;1.13e-16;2!UBERON:0002294;2.43e-15;7!UBERON:0001173;2.43e-15;7!UBERON:0002171;4.23e-13;1!UBERON:0006518;4.23e-13;1!UBERON:0008949;4.23e-13;1!UBERON:0000101;4.23e-13;1!UBERON:0002167;4.23e-13;1!UBERON:0004913;8.15e-13;1!UBERON:0003703;8.15e-13;1!UBERON:0001174;8.15e-13;1!UBERON:0004914;8.15e-13;1!UBERON:0000058;6.41e-11;10!UBERON:0002108;2.19e-10;4!UBERON:0003127;2.74e-07;2 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002394,9.48e-18,6;UBERON:0003928,9.48e-18,6;UBERON:0002114,1.17e-16,2;UBERON:0002171,4.77e-13,1;UBERON:0006518,4.77e-13,1;UBERON:0008949,4.77e-13,1;UBERON:0000101,4.77e-13,1;UBERON:0002167,4.77e-13,1;UBERON:0004913,8.64e-13,1;UBERON:0003703,8.64e-13,1;UBERON:0001174,8.64e-13,1;UBERON:0004914,8.64e-13,1;UBERON:0002294,4.82e-12,9;UBERON:0001173,4.82e-12,9;UBERON:0004912,4.82e-12,9;UBERON:0002108,2.25e-10,4;UBERON:0003127,2.58e-07,2 | |||
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|short_description=p4@uc001lsz.2 | |short_description=p4@uc001lsz.2 | ||
}} | }} |
Latest revision as of 19:12, 23 July 2015
Short description: | p4@uc001lsz.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_uc001lsz.2_5end |
Coexpression cluster: | C238_stomach_gall_breast_duodenum_temporal_MCF7_smallcell |
Association with transcript: | 259bp_to_uc001lsz.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
meningothelial cell | 2.95e-13 | 1 |
Ontology term | p-value | n |
---|---|---|
bile duct | 9.48e-18 | 6 |
digestive system duct | 9.48e-18 | 6 |
duodenum | 1.17e-16 | 2 |
lower lobe of right lung | 4.77e-13 | 1 |
right lung lobe | 4.77e-13 | 1 |
lower lobe of lung | 4.77e-13 | 1 |
lobe of lung | 4.77e-13 | 1 |
right lung | 4.77e-13 | 1 |
hepatopancreatic ampulla | 8.64e-13 | 1 |
extrahepatic bile duct | 8.64e-13 | 1 |
common bile duct | 8.64e-13 | 1 |
duodenal papilla | 8.64e-13 | 1 |
biliary system | 4.82e-12 | 9 |
biliary tree | 4.82e-12 | 9 |
biliary bud | 4.82e-12 | 9 |
small intestine | 2.25e-10 | 4 |
open tracheal system trachea | 2.58e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
central nervous system cancer | 2.95e-13 | 1 |
meningioma | 2.95e-13 | 1 |
cystadenocarcinoma | 3.76e-13 | 1 |
mucinous cystadenocarcinoma | 3.76e-13 | 1 |
tubular adenocarcinoma | 4.98e-07 | 2 |