FFCP PHASE1:Hg19::chr11:9587653..9587660,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr11:9587653..9587660,- | |||
|description=CAGE_peak_at_chr11:9587653..9587660,- | |description=CAGE_peak_at_chr11:9587653..9587660,- | ||
|id=chr11:9587653..9587660,- | |id=chr11:9587653..9587660,- | ||
|ontology_enrichment_celltype=CL:0000860!4.23e-22!45;CL:0002057!1.39e-21!42;CL:0000557!1.48e-18!71;CL:0000766!8.01e-18!76;CL:0002009!2.49e-17!65;CL:0000839!2.32e-16!70;CL:0002194!1.52e-15!63;CL:0000576!1.52e-15!63;CL:0000040!1.52e-15!63;CL:0000559!1.52e-15!63;CL:0002031!2.15e-10!124;CL:0000738!2.45e-10!140;CL:0000763!8.64e-10!112;CL:0000049!8.64e-10!112;CL:0002087!2.90e-08!119;CL:0000548!4.77e-08!679;CL:0000004!4.77e-08!679;CL:0000255!4.77e-08!679;CL:0000012!7.73e-08!682;CL:0000063!1.26e-07!578;CL:0002320!7.70e-07!365 | |ontology_enrichment_celltype=CL:0000860!4.23e-22!45;CL:0002057!1.39e-21!42;CL:0000557!1.48e-18!71;CL:0000766!8.01e-18!76;CL:0002009!2.49e-17!65;CL:0000839!2.32e-16!70;CL:0002194!1.52e-15!63;CL:0000576!1.52e-15!63;CL:0000040!1.52e-15!63;CL:0000559!1.52e-15!63;CL:0002031!2.15e-10!124;CL:0000738!2.45e-10!140;CL:0000763!8.64e-10!112;CL:0000049!8.64e-10!112;CL:0002087!2.90e-08!119;CL:0000548!4.77e-08!679;CL:0000004!4.77e-08!679;CL:0000255!4.77e-08!679;CL:0000012!7.73e-08!682;CL:0000063!1.26e-07!578;CL:0002320!7.70e-07!365 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.63e-25;33!CL:0002057;2.63e-25;33!CL:0000473;1.87e-17;39!CL:0000234;1.87e-17;39!CL:0000767;2.42e-14;3!CL:0000576;1.45e-13;48!CL:0000134;1.18e-11;55!CL:0000766;1.93e-10;69!CL:0000723;2.81e-10;61!CL:0000569;3.08e-10;4!CL:0000048;6.12e-10;58!CL:0000034;1.06e-08;69!CL:0002541;1.68e-07;3!CL:0000219;5.34e-07;193 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.23e-24,42;CL:0002057,3.23e-24,42;CL:0000766,1.37e-22,72;CL:0000473,1.01e-20,48;CL:0000234,1.01e-20,48;CL:0000557,8.28e-20,67;CL:0000839,7.98e-18,66;CL:0002009,1.89e-17,61;CL:0002194,7.71e-16,59;CL:0000576,7.71e-16,59;CL:0000040,7.71e-16,59;CL:0000559,7.71e-16,59;CL:0000763,4.08e-15,108;CL:0000049,4.08e-15,108;CL:0000767,1.72e-14,3;CL:0000134,2.53e-14,354;CL:0002320,7.00e-14,361;CL:0000219,2.53e-12,386;CL:0000738,3.30e-12,136;CL:0000048,2.04e-10,427;CL:0002031,2.19e-10,120;CL:0000723,3.74e-10,433;CL:0000569,4.71e-10,4;CL:0000011,4.71e-10,4;CL:0000034,8.19e-10,441;CL:0002032,1.60e-09,161;CL:0000837,1.60e-09,161;CL:0000037,6.47e-09,168;CL:0000988,3.29e-08,177;CL:0002541,1.65e-07,3;CL:0002087,1.75e-07,115 | |||
|ontology_enrichment_development_v019=CL:0002057;9.60e-16;42!CL:0000011;3.08e-10;4 | |||
|ontology_enrichment_disease=DOID:2394!1.60e-10!14;DOID:120!1.01e-07!27;DOID:193!6.56e-07!29 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.87e-15;14!DOID:120;1.89e-07;27!DOID:193;7.18e-07;29 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.55e-15,14;DOID:120,1.79e-07,27;DOID:193,6.82e-07,29 | |||
|ontology_enrichment_uberon=UBERON:0002371!1.65e-18!80;UBERON:0001474!1.86e-17!86;UBERON:0004765!1.82e-16!101;UBERON:0001434!1.82e-16!101;UBERON:0002390!4.18e-13!102;UBERON:0003061!4.18e-13!102;UBERON:0002193!8.32e-11!112;UBERON:0002405!9.98e-10!115;UBERON:0002204!1.22e-07!167;UBERON:0002118!4.97e-07!5;UBERON:0004532!4.97e-07!5 | |ontology_enrichment_uberon=UBERON:0002371!1.65e-18!80;UBERON:0001474!1.86e-17!86;UBERON:0004765!1.82e-16!101;UBERON:0001434!1.82e-16!101;UBERON:0002390!4.18e-13!102;UBERON:0003061!4.18e-13!102;UBERON:0002193!8.32e-11!112;UBERON:0002405!9.98e-10!115;UBERON:0002204!1.22e-07!167;UBERON:0002118!4.97e-07!5;UBERON:0004532!4.97e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0002118;6.97e-09;5!UBERON:0000992;1.12e-08;13!UBERON:0005631;1.64e-07;10!UBERON:0000158;1.64e-07;10!UBERON:0003124;1.68e-07;3!UBERON:0000920;1.68e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,2.46e-21,82;UBERON:0002371,3.90e-21,76;UBERON:0004765,5.30e-19,90;UBERON:0001434,1.31e-16,100;UBERON:0002405,2.04e-16,93;UBERON:0002390,2.44e-15,98;UBERON:0003061,2.44e-15,98;UBERON:0002193,1.75e-13,108;UBERON:0002384,2.80e-13,371;UBERON:0003081,7.84e-10,203;UBERON:0002118,7.27e-09,5;UBERON:0000992,9.79e-09,13;UBERON:0002204,5.36e-08,167;UBERON:0000926,1.59e-07,315;UBERON:0004120,1.59e-07,315;UBERON:0006603,1.59e-07,315;UBERON:0000920,1.65e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.74259811776028,0.994192127183747,0,0.602694528023977,0,0,0.123121058076788,0.204000691244253,0,0,0,0,0,0,0,1.57345710739562,2.30297638858328,3.71558695958582,0,0,0,0,0,0.293600439334847,2.21598163412751,0.200544447470142,0.868043482863407,0,0,0,0.436194716338694,0.755751887377619,0.485168122375632,0.232429036905685,0,1.54853185447552,1.43846196161075,0.768482119587302,3.07426898855161,4.13694816883942,7.10033151942209,2.70852973188684,0.564727018627814,0,1.34834090667051,2.75475503133812,5.77672248736969,5.11469700639233,0.659702600373432,0,0.426224750532694,0.870627715885752,1.13477044938228,0.622822248995575,3.01498398308092,2.08593167368081,1.3031330682307,0,0.736555271975129,2.21523671208619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37696839079683,0.393010762749165,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.403213486449465,0,0.434473211648397,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19168262731897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0,0,0.179389635688862,0,0,0.600182192168805,0,0,0,0.337552664482532,0,0,0,0,0,0,0,0,0.272746120590835,0,0.243947412259191,0,0,0,0,0,0,0,0,1.39310378409594,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0.100528972411631,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0.985143749731331,0.290633938513962,0,0,0,2.90259361757081,1.15295962733569,0.37872730027914,0,0,0,0,0,0,0,0,0,0,0.517086863031111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0.128343036279748,0,0,0,0.502548796003046,0,0,0,0,0.49076596687656,0,0,0.207970861530807,0.178428988797162,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.246381468041427,0,0,0,0,0,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27612712494584,0,0,0.94443704049192,0,0,0,0,0,0.143124886741991,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286822704408103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,1.43246690842614,0,1.84296421259539,0,0,0.111308705022906,0,0,0.398495976502139,0,0,0,0.123084805461069,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0.0874599999961957,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.01802551410223,0,5.86338253620498,0,0,0,0,0,0,0,0,0.210998064528027,0.816164040795739,0.282706142867882,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0.586993856796269,0.485560759068186,0,0,0,0.189559738885464,1.20258735531594,0,0,0.330991955875499,0,0,0,0,0.173559738335131,0.293977192243133,0.174118413160805,0,0,0,0.146178634172371,0.0821154570532092,0,0,0,0.137041924646751,0.397429223405979,0,0,0,0,0,0,0,0.343189995723929,0,0.248505071130865,0.235694034616795,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0.482259445395058,0.137539436597234,0.415440338029185,0.899895566206002,6.1904156364636,0,0,0,0,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0.638341257770182,2.1760712134779,0,0.306345576763462,0.327872630709804,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0.235265819698172,0,0,0.597019211547496,0.701139929541673,0,2.08343305802598,1.50940741051545,0,1.37304041038154,0.302461847526478,1.24349760466224,1.03498604992744,2.70804504178294,0,2.79473322377267,0,0.53168342911599,2.08698024724694,2.70463696194993,0.380805212168795,2.44122439922797,2.18218391043071,0.107410557042488,2.32016879939247,0.398095888698616,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.737318726261158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76337971845342,0,0,0,0,0,0,0,0,0,0.196295437002051,0.353909170043221,0.366857197043358,0.115525666150338,0.381382095467167,0,0,0,0,0,0,0,0.739280431085226,0,0,0,0,0,0,0,0.351742488719241,0,0,0,0,0,0.0887023701626388,0,0.342976018874837,0,0,0.118193840883968,0,0,0,0,0,0.215927591218621,0.47775168788705,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0.448527450322454,0,0.202117188958219,0,0,0,0.0717222053926763,0,0.0814032686109745,0.213454691755431,0,0.179650404213174,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.74259811776028,0.994192127183747,0,0.602694528023977,0,0,0.123121058076788,0.204000691244253,0,0,0,0,0,0,0,1.57345710739562,2.30297638858328,3.71558695958582,0,0,0,0,0,0.293600439334847,2.21598163412751,0.200544447470142,0.868043482863407,0,0,0,0.436194716338694,0.755751887377619,0.485168122375632,0.232429036905685,0,1.54853185447552,1.43846196161075,0.768482119587302,3.07426898855161,4.13694816883942,7.10033151942209,2.70852973188684,0.564727018627814,0,1.34834090667051,2.75475503133812,5.77672248736969,5.11469700639233,0.659702600373432,0,0.426224750532694,0.870627715885752,1.13477044938228,0.622822248995575,3.01498398308092,2.08593167368081,1.3031330682307,0,0.736555271975129,2.21523671208619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37696839079683,0.393010762749165,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.403213486449465,0,0.434473211648397,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19168262731897,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0,0,0.179389635688862,0,0,0.600182192168805,0,0,0,0.337552664482532,0,0,0,0,0,0,0,0,0.272746120590835,0,0.243947412259191,0,0,0,0,0,0,0,0,1.39310378409594,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0.100528972411631,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0.985143749731331,0.290633938513962,0,0,0,2.90259361757081,1.15295962733569,0.37872730027914,0,0,0,0,0,0,0,0,0,0,0.517086863031111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0.128343036279748,0,0,0,0.502548796003046,0,0,0,0,0.49076596687656,0,0,0.207970861530807,0.178428988797162,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0.246381468041427,0,0,0,0,0,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27612712494584,0,0,0.94443704049192,0,0,0,0,0,0.143124886741991,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286822704408103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,1.43246690842614,0,1.84296421259539,0,0,0.111308705022906,0,0,0.398495976502139,0,0,0,0.123084805461069,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0.0874599999961957,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.01802551410223,0,5.86338253620498,0,0,0,0,0,0,0,0,0.210998064528027,0.816164040795739,0.282706142867882,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0.586993856796269,0.485560759068186,0,0,0,0.189559738885464,1.20258735531594,0,0,0.330991955875499,0,0,0,0,0.173559738335131,0.293977192243133,0.174118413160805,0,0,0,0.146178634172371,0.0821154570532092,0,0,0,0.137041924646751,0.397429223405979,0,0,0,0,0,0,0,0.343189995723929,0,0.248505071130865,0.235694034616795,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0.482259445395058,0.137539436597234,0.415440338029185,0.899895566206002,6.1904156364636,0,0,0,0,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0.638341257770182,2.1760712134779,0,0.306345576763462,0.327872630709804,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0.235265819698172,0,0,0.597019211547496,0.701139929541673,0,2.08343305802598,1.50940741051545,0,1.37304041038154,0.302461847526478,1.24349760466224,1.03498604992744,2.70804504178294,0,2.79473322377267,0,0.53168342911599,2.08698024724694,2.70463696194993,0.380805212168795,2.44122439922797,2.18218391043071,0.107410557042488,2.32016879939247,0.398095888698616,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.737318726261158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76337971845342,0,0,0,0,0,0,0,0,0,0.196295437002051,0.353909170043221,0.366857197043358,0.115525666150338,0.381382095467167,0,0,0,0,0,0,0,0.739280431085226,0,0,0,0,0,0,0,0.351742488719241,0,0,0,0,0,0.0887023701626388,0,0.342976018874837,0,0,0.118193840883968,0,0,0,0,0,0.215927591218621,0.47775168788705,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0.448527450322454,0,0.202117188958219,0,0,0,0.0717222053926763,0,0.0814032686109745,0.213454691755431,0,0.179650404213174,0,0,0,0,0,0 | ||
|short_description=p@chr11:9587653..9587660,- | |short_description=p@chr11:9587653..9587660,- | ||
}} | }} |
Latest revision as of 03:45, 24 July 2015
Short description: | p@chr11:9587653..9587660, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:9587653..9587660, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone element | 2.46e-21 | 82 |
bone marrow | 3.90e-21 | 76 |
skeletal element | 5.30e-19 | 90 |
skeletal system | 1.31e-16 | 100 |
immune system | 2.04e-16 | 93 |
hematopoietic system | 2.44e-15 | 98 |
blood island | 2.44e-15 | 98 |
hemolymphoid system | 1.75e-13 | 108 |
connective tissue | 2.80e-13 | 371 |
lateral plate mesoderm | 7.84e-10 | 203 |
right ovary | 7.27e-09 | 5 |
female gonad | 9.79e-09 | 13 |
musculoskeletal system | 5.36e-08 | 167 |
mesoderm | 1.59e-07 | 315 |
mesoderm-derived structure | 1.59e-07 | 315 |
presumptive mesoderm | 1.59e-07 | 315 |
egg chorion | 1.65e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.55e-15 | 14 |
female reproductive organ cancer | 1.79e-07 | 27 |
reproductive organ cancer | 6.82e-07 | 29 |