FFCP PHASE1:Hg19::chr12:105760414..105760433,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr12:105760414..105760433,- | |||
|description=CAGE_peak_at_chr12:105760414..105760433,- | |||
|id=chr12:105760414..105760433,- | |||
|ontology_enrichment_celltype=CL:0000055!5.04e-19!180;CL:0000548!1.16e-13!679;CL:0000004!1.16e-13!679;CL:0000255!1.16e-13!679;CL:0000057!1.17e-13!75;CL:0000012!1.64e-13!682;CL:0002620!1.81e-12!23;CL:0000144!2.24e-12!625;CL:0000003!3.78e-11!722;CL:0002371!9.54e-11!591;CL:0000222!1.93e-09!119;CL:0000192!9.83e-09!42;CL:0000514!9.83e-09!42;CL:0000183!1.19e-08!59;CL:0000220!1.21e-07!246;CL:0000680!1.95e-07!57;CL:0000056!1.95e-07!57;CL:0000355!1.95e-07!57;CL:1000507!1.99e-07!12;CL:1000494!1.99e-07!12;CL:0002321!2.74e-07!248;CL:0000187!4.84e-07!54;CL:1000497!8.52e-07!18;CL:0002518!8.52e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0002620;7.36e-21;23!CL:1000507;9.06e-17;10!CL:1000494;9.06e-17;10!CL:1000449;4.01e-12;15!CL:1000497;2.49e-10;17!CL:0002518;2.49e-10;17!CL:0002681;2.94e-08;12!CL:0002584;2.94e-08;12!CL:0000057;1.24e-07;73!CL:0000134;2.47e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,5.98e-21,23;CL:1000507,9.12e-17,10;CL:1000494,9.12e-17,10;CL:0000057,3.29e-16,76;CL:1000449,3.77e-12,15;CL:1000497,2.36e-10,17;CL:0002518,2.36e-10,17;CL:0000048,2.68e-08,427;CL:0002681,2.71e-08,12;CL:0002584,2.71e-08,12;CL:0000723,7.07e-08,433;CL:0000034,2.44e-07,441 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;3.12e-08;5!DOID:450;3.12e-08;5!DOID:66;3.12e-08;5!DOID:423;3.12e-08;5!DOID:0080000;3.12e-08;5!DOID:11722;3.12e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,3.98e-08,5;DOID:450,3.98e-08,5;DOID:66,3.98e-08,5;DOID:423,3.98e-08,5;DOID:0080000,3.98e-08,5;DOID:11722,3.98e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0000486!4.39e-12!82;UBERON:0005256!2.96e-10!143;UBERON:0000914!4.03e-10!83;UBERON:0002329!4.03e-10!83;UBERON:0003077!4.03e-10!83;UBERON:0003059!4.03e-10!83;UBERON:0007282!4.03e-10!83;UBERON:0009618!4.03e-10!83;UBERON:0007285!4.03e-10!83;UBERON:0004290!1.65e-09!70;UBERON:0002199!2.37e-09!45;UBERON:0002416!2.37e-09!45;UBERON:0003102!1.81e-08!95;UBERON:0002097!3.38e-08!40;UBERON:0009773!1.99e-07!12;UBERON:0001231!1.99e-07!12;UBERON:0004810!1.99e-07!12;UBERON:0002100!6.58e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;9.06e-17;10!UBERON:0009773;9.06e-17;10!UBERON:0001231;9.06e-17;10!UBERON:0004810;9.06e-17;10!UBERON:0003102;1.99e-12;50!UBERON:0002097;2.35e-12;41!UBERON:0006555;4.01e-12;15!UBERON:0004819;4.01e-12;15!UBERON:0001285;4.01e-12;15!UBERON:0007684;4.01e-12;15!UBERON:0002199;1.25e-11;46!UBERON:0002416;1.25e-11;46!UBERON:0002067;3.45e-09;9!UBERON:0001225;2.94e-08;12!UBERON:0008987;2.94e-08;12!UBERON:0005631;8.53e-07;10!UBERON:0000158;8.53e-07;10!UBERON:0003891;8.87e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,7.73e-18,46;UBERON:0002416,7.73e-18,46;UBERON:0004810,9.12e-17,10;UBERON:0002097,6.27e-16,41;UBERON:0004211,3.77e-12,15;UBERON:0009773,3.77e-12,15;UBERON:0001231,3.77e-12,15;UBERON:0001285,3.77e-12,15;UBERON:0007684,3.77e-12,15;UBERON:0004208,3.77e-12,15;UBERON:0003102,7.67e-12,99;UBERON:0006555,3.40e-11,16;UBERON:0004819,3.40e-11,16;UBERON:0002067,8.57e-10,9;UBERON:0004016,8.57e-10,9;UBERON:0010083,8.57e-10,9;UBERON:0000486,2.26e-09,83;UBERON:0007503,4.92e-09,78;UBERON:0007524,1.63e-08,73;UBERON:0001225,2.71e-08,12;UBERON:0008987,2.71e-08,12;UBERON:0002329,5.14e-08,71;UBERON:0003059,5.14e-08,71;UBERON:0007282,5.14e-08,71;UBERON:0004290,5.14e-08,71;UBERON:0009618,5.14e-08,71;UBERON:0003077,8.25e-08,72;UBERON:0007285,8.25e-08,72 | |||
|phase1_expression=0.363356758541113,0,0.140954404095971,3.00219895059391,0.446961094427288,2.61701557230111,10.1319951267324,1.89515962028049,0,0.737201809504527,1.39560233594486,4.36882744260345,0.791300934685361,0.247532705920093,0,3.36162573225888,2.41077811209591,1.46062018077475,2.92759679274304,1.23121058076788,1.22400414746552,0.626909442956176,0.572471974262113,0.547497700291537,0.376627918784408,0.0764134057479513,0.0821005894499457,0.0787107813136792,0,0.383829398097213,0,0,0,0.369754010166788,0,0.284338464974843,0,0.553995408531877,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0.83593247695339,0,0,0,0.222820913770347,0.294605907474837,0.221533894583621,0,0.384273959177026,0.260118695119756,0.164437904603676,0.276350017785848,0.289803085735052,0,0.267540828089713,0,1.24640276967323,0,0,0.253019692019503,0,0.651083453856419,0,0.150575119077773,0.127986611154418,0,0,0,0.80642697289893,0,0,0,0,0,5.06014813338393,1.00267582127178,0.144846518960824,0,0.486634870302636,0.189069634328136,0.443458794925128,0.175669571386252,0.130979075497713,1.82147644146271,0.370784442784429,0,0.174129737299267,0,2.38490624305342,0,1.11437250398869,0,0.860234595106124,0.347140501607594,0,0.838998872419812,0.275118041940067,0,0,0,0,0.402829317109147,0.760272105718513,0.24406205754817,1.10298924103761,0,0.17859945656816,0.22452937262617,0.112611480483322,0,0,0,0,0,0.872188104285069,2.48485975847659,1.51956613997496,0.132409180813219,0.286836620748814,0.354668382198357,2.80338800071154,1.06748995729705,0.49333509683432,0,0.134710672069688,0.163461903113459,0,0,2.34321431833797,1.87296046098192,0.570471821544449,1.64393548606981,1.40921398372518,3.56120477609889,5.75848307479219,0.204154171254893,1.22834317311768,0.309977343527296,0,0,0,0,2.18836948140286,0.250237039743928,0,6.14568669233173,0.919463387397059,0.300476117813194,0.226864366320042,1.25572744982203,3.84403299873421,3.17897851739343,3.00091096084402,2.47326070172253,1.28820270022815,6.32797311527405,1.0126579934476,4.77441325289873,2.01947019395292,2.66944706062668,0.969876340912871,3.90510551768276,10.8812266085851,8.13890843090341,1.15956511897978,1.09098448236334,0.860413786167011,0,0,0,0.207322110030741,0.252320850875628,0,1.56449532329816,1.92972281457866,1.38134921352481,0,2.88751792667834,0.236613600079688,0,0,0.110293972732394,0,0.237270619111097,0.269662616320329,0.196221465125346,0,0,0,0.4115740113314,0,0,0,0,0,0.245976877086227,1.54411029268673,0.658501712451753,0,0.804231779293047,0.185176890317059,3.9096996637239,1.03993478527958,0,0.34779121492523,0.117408694235822,0.144366447761074,0,0.190254152234598,0.790204397959275,0,0,0,0,0,0.335964256397719,0.992425680696705,0.895585227028483,2.03443756959773,0.766765358330422,0,0,0,0,0,0.063497894292169,0.381988425558278,0,0,0.205654985406647,0,0,0.112131084345361,0,0.36669142910475,0.904902010304444,0,0,3.19125739901845,2.08014873822732,2.82928111688356,4.25547396069835,1.3321108950805,0.142977993658148,0.542621605391443,0,0.977208552881205,0.355391948742546,0.791951872933429,0.301439377059586,0.871533458600294,0,0,0,0,7.18874566474748,3.44585807502342,0,0.723906533337896,0.205476322550383,0.537182889719687,0.672510863961164,0.197030760201927,0.215627574859517,0.128343036279748,0,0,0.773288812777695,0.167516265334349,0,0,0,0,0.24538298343828,0,0.542530047399471,2.07970861530807,1.42743191037729,0.788512075169673,0.585707074963566,0.300946099727719,0,0,3.32112799267718,0.368738337083406,1.65078867489357,0.979005787313703,0.686286847621712,0,0,0,0,0,0.604780586659361,0.248107807818777,0.153461973288062,0.561320188866147,0.512556597022804,2.04682899626681,0.321707842287215,0,0.771048469013278,1.42049380250502,0.492762936082855,0.519254429183621,2.32420756919918,0.725156697549733,0.200506470303285,0.184161977871793,0.68888668898764,0.364182336013434,0.786746489756545,7.21919380651859,4.00479752942957,3.13739907670742,7.30696123266303,2.53323909342902,0,0.680374821106063,0.647747748306418,0,3.52230368807009,2.50844886927427,7.64628819135115,10.8039881160734,5.1491193586101,0,0,0.769350375349168,0,0,0,0,0.495056999523528,0,0,0,0,0.770243085573222,1.22802939780904,3.1702411671442,0.107420244868274,0.290033387828457,0.255679882248303,0,0.165284915360978,0,0,0,10.2266020845403,1.25924938732256,0,0.616067160352178,0,0.869932992075073,0.55597265731176,0.429374660225974,0,1.2655176988749,0.762520775695299,1.79128453917934,0,0.318203247925937,0,0.539617372749944,0.274537029736055,1.29593642580255,0.202182481573316,4.75530963519025,3.79132610615083,0.975267478179181,0.731140468893853,1.05650146756755,3.54899769660763,0.565621727814851,0,1.10273068709225,0,0.438450885253763,1.73632660280006,0.655894752046633,0.202910376962704,0.6196469961995,3.94373843545138,0.430234056612155,0.294747123039363,0.35667105148125,1.06428319221179,1.26664581178598,2.30506425071931,3.03578539012572,0.699869440489966,0.288666338176536,0,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| |||
|short_description=p@chr12:105760414..105760433,- | |||
}} |
Latest revision as of 04:23, 24 July 2015
Short description: | p@chr12:105760414..105760433, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:105760414..105760433, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 5.98e-21 | 23 |
kidney tubule cell | 9.12e-17 | 10 |
nephron tubule epithelial cell | 9.12e-17 | 10 |
fibroblast | 3.29e-16 | 76 |
epithelial cell of nephron | 3.77e-12 | 15 |
kidney cell | 2.36e-10 | 17 |
kidney epithelial cell | 2.36e-10 | 17 |
multi fate stem cell | 2.68e-08 | 427 |
kidney cortical cell | 2.71e-08 | 12 |
renal cortical epithelial cell | 2.71e-08 | 12 |
somatic stem cell | 7.07e-08 | 433 |
stem cell | 2.44e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
integument | 7.73e-18 | 46 |
integumental system | 7.73e-18 | 46 |
nephron tubule epithelium | 9.12e-17 | 10 |
skin of body | 6.27e-16 | 41 |
nephron epithelium | 3.77e-12 | 15 |
renal tubule | 3.77e-12 | 15 |
nephron tubule | 3.77e-12 | 15 |
nephron | 3.77e-12 | 15 |
uriniferous tubule | 3.77e-12 | 15 |
nephrogenic mesenchyme | 3.77e-12 | 15 |
surface structure | 7.67e-12 | 99 |
excretory tube | 3.40e-11 | 16 |
kidney epithelium | 3.40e-11 | 16 |
dermis | 8.57e-10 | 9 |
dermatome | 8.57e-10 | 9 |
future dermis | 8.57e-10 | 9 |
multilaminar epithelium | 2.26e-09 | 83 |
epithelial vesicle | 4.92e-09 | 78 |
dense mesenchyme tissue | 1.63e-08 | 73 |
cortex of kidney | 2.71e-08 | 12 |
renal parenchyma | 2.71e-08 | 12 |
somite | 5.14e-08 | 71 |
presomitic mesoderm | 5.14e-08 | 71 |
presumptive segmental plate | 5.14e-08 | 71 |
dermomyotome | 5.14e-08 | 71 |
trunk paraxial mesoderm | 5.14e-08 | 71 |
paraxial mesoderm | 8.25e-08 | 72 |
presumptive paraxial mesoderm | 8.25e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.98e-08 | 5 |
myotonic disease | 3.98e-08 | 5 |
muscle tissue disease | 3.98e-08 | 5 |
myopathy | 3.98e-08 | 5 |
muscular disease | 3.98e-08 | 5 |
myotonic dystrophy | 3.98e-08 | 5 |