FFCP PHASE1:Hg19::chr12:108728501..108728516,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:108728501..108728516,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_at_chr12:108728501..108728516,+ | |description=CAGE_peak_at_chr12:108728501..108728516,+ | ||
|id=chr12:108728501..108728516,+ | |id=chr12:108728501..108728516,+ | ||
|ontology_enrichment_celltype=CL:0002057!2.42e-94!42;CL:0000860!1.14e-87!45;CL:0000766!1.20e-64!76;CL:0002194!2.11e-64!63;CL:0000576!2.11e-64!63;CL:0000040!2.11e-64!63;CL:0000559!2.11e-64!63;CL:0002009!2.86e-62!65;CL:0000839!1.83e-57!70;CL:0000557!1.39e-56!71;CL:0000763!4.77e-42!112;CL:0000049!4.77e-42!112;CL:0000738!2.17e-37!140;CL:0002087!8.84e-37!119;CL:0002031!4.86e-30!124;CL:0000037!2.89e-29!172;CL:0000566!2.89e-29!172;CL:0000988!2.63e-27!182;CL:0002032!1.38e-26!165;CL:0000837!1.38e-26!165;CL:0000767!5.15e-16!3;CL:0002393!1.05e-14!9;CL:0002397!1.05e-14!9;CL:0000134!1.35e-11!358;CL:0002320!3.06e-11!365;CL:0000034!1.61e-10!444;CL:0000048!3.66e-10!430;CL:0000219!5.41e-10!390;CL:0000723!6.31e-10!436;CL:0000842!2.48e-08!3 | |ontology_enrichment_celltype=CL:0002057!2.42e-94!42;CL:0000860!1.14e-87!45;CL:0000766!1.20e-64!76;CL:0002194!2.11e-64!63;CL:0000576!2.11e-64!63;CL:0000040!2.11e-64!63;CL:0000559!2.11e-64!63;CL:0002009!2.86e-62!65;CL:0000839!1.83e-57!70;CL:0000557!1.39e-56!71;CL:0000763!4.77e-42!112;CL:0000049!4.77e-42!112;CL:0000738!2.17e-37!140;CL:0002087!8.84e-37!119;CL:0002031!4.86e-30!124;CL:0000037!2.89e-29!172;CL:0000566!2.89e-29!172;CL:0000988!2.63e-27!182;CL:0002032!1.38e-26!165;CL:0000837!1.38e-26!165;CL:0000767!5.15e-16!3;CL:0002393!1.05e-14!9;CL:0002397!1.05e-14!9;CL:0000134!1.35e-11!358;CL:0002320!3.06e-11!365;CL:0000034!1.61e-10!444;CL:0000048!3.66e-10!430;CL:0000219!5.41e-10!390;CL:0000723!6.31e-10!436;CL:0000842!2.48e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.63e-52;33!CL:0002057;4.63e-52;33!CL:0000473;1.78e-31;39!CL:0000234;1.78e-31;39!CL:0000576;5.79e-30;48!CL:0000226;1.55e-16;3!CL:0000842;1.55e-16;3!CL:0000766;2.12e-16;69!CL:0002087;2.42e-15;104!CL:0000763;1.32e-10;100!CL:0002393;8.74e-09;6!CL:0002397;8.74e-09;6!CL:0000738;1.07e-08;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.21e-60,42;CL:0002057,1.21e-60,42;CL:0000473,7.31e-53,48;CL:0000234,7.31e-53,48;CL:0002194,5.84e-42,59;CL:0000576,5.84e-42,59;CL:0000040,5.84e-42,59;CL:0000559,5.84e-42,59;CL:0002009,1.49e-40,61;CL:0000839,2.12e-37,66;CL:0000557,7.97e-37,67;CL:0000766,3.48e-34,72;CL:0002087,3.33e-27,115;CL:0000738,9.52e-23,136;CL:0000763,2.63e-22,108;CL:0000049,2.63e-22,108;CL:0002031,6.53e-20,120;CL:0000037,4.47e-18,168;CL:0000988,4.61e-17,177;CL:0000226,1.74e-16,3;CL:0000842,1.74e-16,3;CL:0002032,2.16e-14,161;CL:0000837,2.16e-14,161;CL:0000134,1.68e-07,354;CL:0002320,2.59e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;4.86e-42;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.24e-49!80;UBERON:0001474!8.52e-46!86;UBERON:0002390!6.98e-44!102;UBERON:0003061!6.98e-44!102;UBERON:0002193!1.91e-39!112;UBERON:0004765!3.55e-38!101;UBERON:0001434!3.55e-38!101;UBERON:0002405!7.70e-33!115;UBERON:0002204!8.53e-21!167;UBERON:0003081!1.65e-17!216;UBERON:0002384!9.29e-11!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.55e-32,76;UBERON:0002390,3.45e-32,98;UBERON:0003061,3.45e-32,98;UBERON:0001474,7.41e-30,82;UBERON:0002193,4.54e-29,108;UBERON:0004765,4.47e-27,90;UBERON:0002405,3.73e-26,93;UBERON:0001434,3.23e-24,100;UBERON:0003081,1.24e-14,203;UBERON:0002204,8.30e-14,167;UBERON:0000926,1.06e-08,315;UBERON:0004120,1.06e-08,315;UBERON:0006603,1.06e-08,315;UBERON:0002384,4.69e-07,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0.309632246632152,0,0,0,0,0,0,0.553995408531877,3.00816671205213,1.51907609501096,0,0,0,0,0,0,1.16214518452842,0,0.309706370895104,2.01384674625505,0.512321413058201,1.89185783910868,0.689491361473237,0.645484683583826,0,0.941211697713023,0.272906150057846,2.02251136000576,1.22433556948361,2.24650318953266,1.91801137739712,0.329851300186716,0.199463657621632,0,4.64334781805734,1.13477044938228,1.86846674698672,0,0.521482918420201,0.217188844705117,4.23779651843358,2.20966581592539,8.22802207346299,0.211255286311942,0.850417199860174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.15714200818617,1.17400313583789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0.309632246632152,0,0,0,0,0,0,0.553995408531877,3.00816671205213,1.51907609501096,0,0,0,0,0,0,1.16214518452842,0,0.309706370895104,2.01384674625505,0.512321413058201,1.89185783910868,0.689491361473237,0.645484683583826,0,0.941211697713023,0.272906150057846,2.02251136000576,1.22433556948361,2.24650318953266,1.91801137739712,0.329851300186716,0.199463657621632,0,4.64334781805734,1.13477044938228,1.86846674698672,0,0.521482918420201,0.217188844705117,4.23779651843358,2.20966581592539,8.22802207346299,0.211255286311942,0.850417199860174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.15714200818617,1.17400313583789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:108728501..108728516,+ | |short_description=p@chr12:108728501..108728516,+ | ||
}} | }} |
Latest revision as of 04:35, 24 July 2015
Short description: | p@chr12:108728501..108728516, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:108728501..108728516, + |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.21e-60 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.21e-60 | 42 |
defensive cell | 7.31e-53 | 48 |
phagocyte | 7.31e-53 | 48 |
monopoietic cell | 5.84e-42 | 59 |
monocyte | 5.84e-42 | 59 |
monoblast | 5.84e-42 | 59 |
promonocyte | 5.84e-42 | 59 |
macrophage dendritic cell progenitor | 1.49e-40 | 61 |
myeloid lineage restricted progenitor cell | 2.12e-37 | 66 |
granulocyte monocyte progenitor cell | 7.97e-37 | 67 |
myeloid leukocyte | 3.48e-34 | 72 |
nongranular leukocyte | 3.33e-27 | 115 |
leukocyte | 9.52e-23 | 136 |
myeloid cell | 2.63e-22 | 108 |
common myeloid progenitor | 2.63e-22 | 108 |
hematopoietic lineage restricted progenitor cell | 6.53e-20 | 120 |
hematopoietic stem cell | 4.47e-18 | 168 |
hematopoietic cell | 4.61e-17 | 177 |
single nucleate cell | 1.74e-16 | 3 |
mononuclear cell | 1.74e-16 | 3 |
hematopoietic oligopotent progenitor cell | 2.16e-14 | 161 |
hematopoietic multipotent progenitor cell | 2.16e-14 | 161 |
mesenchymal cell | 1.68e-07 | 354 |
connective tissue cell | 2.59e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.55e-32 | 76 |
hematopoietic system | 3.45e-32 | 98 |
blood island | 3.45e-32 | 98 |
bone element | 7.41e-30 | 82 |
hemolymphoid system | 4.54e-29 | 108 |
skeletal element | 4.47e-27 | 90 |
immune system | 3.73e-26 | 93 |
skeletal system | 3.23e-24 | 100 |
lateral plate mesoderm | 1.24e-14 | 203 |
musculoskeletal system | 8.30e-14 | 167 |
mesoderm | 1.06e-08 | 315 |
mesoderm-derived structure | 1.06e-08 | 315 |
presumptive mesoderm | 1.06e-08 | 315 |
connective tissue | 4.69e-07 | 371 |