FFCP PHASE1:Hg19::chr12:19571344..19571348,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:19571344..19571348,+ | |||
|coexpression_cluster_id=C267 | |coexpression_cluster_id=C267 | ||
|description=CAGE_peak_at_chr12:19571344..19571348,+ | |description=CAGE_peak_at_chr12:19571344..19571348,+ | ||
|id=chr12:19571344..19571348,+ | |id=chr12:19571344..19571348,+ | ||
|ontology_enrichment_celltype=CL:0000039!5.85e-20!7;CL:0000586!5.85e-20!7;CL:0000159!2.11e-11!2 | |ontology_enrichment_celltype=CL:0000039!5.85e-20!7;CL:0000586!5.85e-20!7;CL:0000159!2.11e-11!2 | ||
|ontology_enrichment_celltype_v019=CL:0000039;8.55e-37;7!CL:0000586;8.55e-37;7!CL:0000083;1.70e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.16e-36,7;CL:0000586,1.16e-36,7;CL:0000083,1.70e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0005425;2.73e-29;1!UBERON:0009117;2.51e-12;10!UBERON:0005564;2.51e-12;10!UBERON:0003056;1.04e-10;3 | |||
|ontology_enrichment_disease=DOID:3095!9.58e-19!22;DOID:2994!9.58e-19!22;DOID:0050687!3.30e-13!143;DOID:305!1.97e-09!106;DOID:162!8.77e-08!235;DOID:14566!1.61e-07!239;DOID:1799!4.09e-07!1;DOID:10165!4.09e-07!1;DOID:1798!4.09e-07!1 | |ontology_enrichment_disease=DOID:3095!9.58e-19!22;DOID:2994!9.58e-19!22;DOID:0050687!3.30e-13!143;DOID:305!1.97e-09!106;DOID:162!8.77e-08!235;DOID:14566!1.61e-07!239;DOID:1799!4.09e-07!1;DOID:10165!4.09e-07!1;DOID:1798!4.09e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:3095;2.72e-32;22!DOID:2994;2.72e-32;22!DOID:1799;7.48e-30;1!DOID:10165;7.48e-30;1!DOID:1798;7.48e-30;1!DOID:1793;1.70e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.00e-32,22;DOID:2994,3.00e-32,22;DOID:1799,7.48e-30,1;DOID:10165,7.48e-30,1;DOID:1798,7.48e-30,1;DOID:1793,1.70e-08,4;DOID:0050687,2.45e-07,143;DOID:305,5.34e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0000941!4.85e-07!1;UBERON:0004904!4.85e-07!1;UBERON:0002464!4.85e-07!1;UBERON:0001021!4.85e-07!1;UBERON:0001785!4.85e-07!1;UBERON:0000473!8.38e-07!8 | |ontology_enrichment_uberon=UBERON:0000941!4.85e-07!1;UBERON:0004904!4.85e-07!1;UBERON:0002464!4.85e-07!1;UBERON:0001021!4.85e-07!1;UBERON:0001785!4.85e-07!1;UBERON:0000473!8.38e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;2.73e-29;1!UBERON:0001785;2.73e-29;1!UBERON:0002464;2.73e-29;1!UBERON:0004904;2.73e-29;1!UBERON:0001021;2.73e-29;1!UBERON:0003714;2.21e-15;2!UBERON:0005162;2.21e-15;2!UBERON:0000122;2.21e-15;2!UBERON:0000473;3.79e-15;8!UBERON:0003135;2.68e-11;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,1.78e-29,1;UBERON:0001785,1.78e-29,1;UBERON:0002464,1.78e-29,1;UBERON:0004904,1.78e-29,1;UBERON:0001021,1.78e-29,1;UBERON:0003902,1.78e-29,1;UBERON:0005425,1.78e-29,1;UBERON:0003714,1.78e-15,2;UBERON:0005162,1.78e-15,2;UBERON:0000122,1.78e-15,2;UBERON:0000473,4.37e-15,8;UBERON:0003135,2.98e-11,11;UBERON:0001781,2.11e-08,4 | |||
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|short_description=p@chr12:19571344..19571348,+ | |short_description=p@chr12:19571344..19571348,+ | ||
}} | }} |
Latest revision as of 07:23, 24 July 2015
Short description: | p@chr12:19571344..19571348, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:19571344..19571348, + |
Coexpression cluster: | C267_pancreatic_placenta_choriocarcinoma_testicular_teratocarcinoma_chorionic_clear |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.16e-36 | 7 |
germ cell | 1.16e-36 | 7 |
epithelial cell of pancreas | 1.70e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 1.78e-29 | 1 |
cranial nerve | 1.78e-29 | 1 |
nerve trunk | 1.78e-29 | 1 |
nerve connecting eye with brain | 1.78e-29 | 1 |
nerve | 1.78e-29 | 1 |
retinal neural layer | 1.78e-29 | 1 |
presumptive neural retina | 1.78e-29 | 1 |
neural tissue | 1.78e-15 | 2 |
multi cell component structure | 1.78e-15 | 2 |
neuron projection bundle | 1.78e-15 | 2 |
testis | 4.37e-15 | 8 |
male reproductive organ | 2.98e-11 | 11 |
layer of retina | 2.11e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.00e-32 | 22 |
germ cell cancer | 3.00e-32 | 22 |
islet cell tumor | 7.48e-30 | 1 |
endocrine pancreas cancer | 7.48e-30 | 1 |
pancreatic endocrine carcinoma | 7.48e-30 | 1 |
pancreatic cancer | 1.70e-08 | 4 |
cell type cancer | 2.45e-07 | 143 |
carcinoma | 5.34e-07 | 106 |