FFCP PHASE1:Hg19::chr13:44880829..44880844,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr13:44880829..44880844,+ to FFCP PHASE1:Hg19::chr13:44880829..44880844,+: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr13:44880829..44880844,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_at_chr13:44880829..44880844,+ | |||
|id=chr13:44880829..44880844,+ | |||
|ontology_enrichment_celltype=CL:0000860!1.20e-23!45;CL:0002057!1.21e-20!42;CL:0002194!1.22e-14!63;CL:0000576!1.22e-14!63;CL:0000040!1.22e-14!63;CL:0000559!1.22e-14!63;CL:0002009!6.94e-14!65;CL:0000839!3.28e-13!70;CL:0000557!6.95e-13!71;CL:0000766!2.16e-11!76 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.61e-57;33!CL:0002057;1.61e-57;33!CL:0000473;1.30e-39;39!CL:0000234;1.30e-39;39!CL:0000576;2.92e-23;48!CL:0000766;7.94e-15;69!CL:0000569;1.07e-13;4!CL:0002087;6.30e-09;104!CL:0000763;1.14e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.49e-48,42;CL:0002057,5.49e-48,42;CL:0000473,1.74e-41,48;CL:0000234,1.74e-41,48;CL:0002194,2.23e-32,59;CL:0000576,2.23e-32,59;CL:0000040,2.23e-32,59;CL:0000559,2.23e-32,59;CL:0002009,3.34e-31,61;CL:0000839,1.43e-28,66;CL:0000557,4.31e-28,67;CL:0000766,6.87e-26,72;CL:0000763,5.35e-16,108;CL:0000049,5.35e-16,108;CL:0002087,8.65e-15,115;CL:0002031,5.19e-14,120;CL:0000569,1.23e-13,4;CL:0000011,1.23e-13,4;CL:0000738,6.61e-12,136;CL:0002032,1.87e-09,161;CL:0000837,1.87e-09,161;CL:0000037,6.70e-09,168;CL:0000988,2.98e-08,177;CL:0000134,6.43e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;9.31e-36;42!CL:0000011;1.07e-13;4!UBERON:0005425;4.88e-07;1 | |||
|ontology_enrichment_disease=DOID:2394!5.35e-09!14;DOID:193!8.34e-09!29;DOID:120!1.81e-08!27 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.58e-12!80;UBERON:0004765!7.74e-12!101;UBERON:0001434!7.74e-12!101;UBERON:0000062!1.04e-11!511;UBERON:0001474!1.62e-11!86;UBERON:0002390!1.87e-09!102;UBERON:0003061!1.87e-09!102;UBERON:0000923!4.11e-08!604;UBERON:0005291!4.11e-08!604;UBERON:0006598!4.11e-08!604;UBERON:0002532!4.11e-08!604;UBERON:0002050!4.81e-08!605;UBERON:0005423!4.81e-08!605;UBERON:0002118!7.70e-08!5;UBERON:0004532!7.70e-08!5;UBERON:0002405!9.17e-08!115;UBERON:0002193!1.03e-07!112;UBERON:0000922!1.43e-07!612;UBERON:0000467!4.32e-07!625;UBERON:0000480!5.01e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;4.88e-07;1!UBERON:0000997;4.88e-07;1!UBERON:0001785;4.88e-07;1!UBERON:0002464;4.88e-07;1!UBERON:0004904;4.88e-07;1!UBERON:0005056;4.88e-07;1!UBERON:0001021;4.88e-07;1!UBERON:0004176;4.88e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.68e-27,76;UBERON:0001474,6.87e-25,82;UBERON:0004765,2.51e-22,90;UBERON:0002405,1.77e-21,93;UBERON:0002390,3.54e-20,98;UBERON:0003061,3.54e-20,98;UBERON:0001434,1.08e-19,100;UBERON:0002193,6.18e-18,108;UBERON:0003081,8.39e-11,203;UBERON:0002204,3.74e-10,167;UBERON:0000926,2.04e-08,315;UBERON:0004120,2.04e-08,315;UBERON:0006603,2.04e-08,315;UBERON:0000941,4.89e-07,1;UBERON:0001785,4.89e-07,1;UBERON:0002464,4.89e-07,1;UBERON:0004904,4.89e-07,1;UBERON:0001021,4.89e-07,1;UBERON:0003902,4.89e-07,1;UBERON:0005425,4.89e-07,1;UBERON:0000997,5.84e-07,1;UBERON:0005056,5.84e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601633342410425,0.434021741431704,0,0,0,0.290796477559129,0,0,1.16214518452842,1.6446715520873,1.54853185447552,8.05538698502021,1.0246428261164,4.49316236788312,14.479318590938,7.10033151942209,2.70852973188684,0.941211697713023,0.545812300115692,2.9214052977861,19.5893691117378,12.1953030288916,8.95071976118658,0,0,0,15.6712988859435,9.64554881974938,4.35975574296902,0.502497330513487,0.521482918420201,0.868755378820466,7.26479403160043,8.47038562771399,5.37986058649504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0.189069634328136,0.443458794925128,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0.277064115484183,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.505754070234305,0.241011029883482,0.220587945464788,0,0,0.134831308160164,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0.171567810298526,0.329250856225877,0,0.301586917234893,0.185176890317059,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0.335964256397719,0.425325291727159,0,0.290633938513962,0.383382679165211,0,0,0.414656231081544,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0.0920809889358963,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,1.02090169995667,0.10115778085555,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0.211107635297664,0,0,0,0.192444225451024,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0.307160702099232,0,0.281338832821026,0.111308705022906,0,0,0.19924798825107,0,0,0.102268682502155,0,0,0.0898683511473268,0.358042349351218,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77148277162768,0.241192877250816,0,0,0,0.219385397153973,0.435753854075961,0,0,0.455768223388005,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0.19566461893209,0,0,0,0,0.126373159256976,0,0,0.664653872707185,0,0,0,0.284609546029793,0,0,1.17590876897253,0.0870592065804026,0,0,0.290268993867255,0.65780385377567,0.574808199372465,0.0969890164884194,0,0,0,0.397429223405979,0,0,0.240476460754601,0.213452994739353,0,0.288180834308212,0,0,1.4405479798815,0.124252535565433,0.707082103850386,0,0,0,0,0.600420288709789,0.136905378891993,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0.179287339332845,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0.258565912723101,0.26446520348538,0,0,0.213574825135389,0,0,0,0,0,1.27668251554036,0.544017803369474,0,0.612691153526923,0.327872630709804,0,0,0.122026264901963,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0.298509605773748,0,0,2.27283606330107,0.251567901752575,0,3.66144109435078,0.151230923763239,1.08806040407946,1.47855149989634,0.955780602982214,0,0.465788870628778,0,0.265841714557995,0,2.85489457094715,0.761610424337591,0.813741466409323,2.54588122883583,0.859284456339908,1.39210127963548,0.398095888698616,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0.737318726261158,0,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0.11796972334774,0.366857197043358,0,0,0.690359926060101,0,0,0,0,0,0,0,0,0,0.413373593002368,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0.222462803784138,0.078493092850514,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9164274741762,0,1.91107787795487,0,0.098150233615243,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0.594092800654172,0,0,0,0,0,0,0,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0,0,0,0.193766729508018,0.620747142958579,0,0,0,0,0,0,0,0,0.244209805832924,0.426909383510862,0,0,0,0,0,0.665756774185513,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601633342410425,0.434021741431704,0,0,0,0.290796477559129,0,0,1.16214518452842,1.6446715520873,1.54853185447552,8.05538698502021,1.0246428261164,4.49316236788312,14.479318590938,7.10033151942209,2.70852973188684,0.941211697713023,0.545812300115692,2.9214052977861,19.5893691117378,12.1953030288916,8.95071976118658,0,0,0,15.6712988859435,9.64554881974938,4.35975574296902,0.502497330513487,0.521482918420201,0.868755378820466,7.26479403160043,8.47038562771399,5.37986058649504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0.189069634328136,0.443458794925128,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0.277064115484183,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.505754070234305,0.241011029883482,0.220587945464788,0,0,0.134831308160164,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0.171567810298526,0.329250856225877,0,0.301586917234893,0.185176890317059,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0.335964256397719,0.425325291727159,0,0.290633938513962,0.383382679165211,0,0,0.414656231081544,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0.0920809889358963,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,1.02090169995667,0.10115778085555,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0.211107635297664,0,0,0,0.192444225451024,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0.307160702099232,0,0.281338832821026,0.111308705022906,0,0,0.19924798825107,0,0,0.102268682502155,0,0,0.0898683511473268,0.358042349351218,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77148277162768,0.241192877250816,0,0,0,0.219385397153973,0.435753854075961,0,0,0.455768223388005,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0,0,0.19566461893209,0,0,0,0,0.126373159256976,0,0,0.664653872707185,0,0,0,0.284609546029793,0,0,1.17590876897253,0.0870592065804026,0,0,0.290268993867255,0.65780385377567,0.574808199372465,0.0969890164884194,0,0,0,0.397429223405979,0,0,0.240476460754601,0.213452994739353,0,0.288180834308212,0,0,1.4405479798815,0.124252535565433,0.707082103850386,0,0,0,0,0.600420288709789,0.136905378891993,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0.179287339332845,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0.258565912723101,0.26446520348538,0,0,0.213574825135389,0,0,0,0,0,1.27668251554036,0.544017803369474,0,0.612691153526923,0.327872630709804,0,0,0.122026264901963,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0.298509605773748,0,0,2.27283606330107,0.251567901752575,0,3.66144109435078,0.151230923763239,1.08806040407946,1.47855149989634,0.955780602982214,0,0.465788870628778,0,0.265841714557995,0,2.85489457094715,0.761610424337591,0.813741466409323,2.54588122883583,0.859284456339908,1.39210127963548,0.398095888698616,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0.737318726261158,0,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0.11796972334774,0.366857197043358,0,0,0.690359926060101,0,0,0,0,0,0,0,0,0,0.413373593002368,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0.222462803784138,0.078493092850514,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9164274741762,0,1.91107787795487,0,0.098150233615243,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0,0,0,0,0.594092800654172,0,0,0,0,0,0,0,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0,0,0,0.193766729508018,0.620747142958579,0,0,0,0,0,0,0,0,0.244209805832924,0.426909383510862,0,0,0,0,0,0.665756774185513,0,0 | ||
|short_description=p@chr13:44880829..44880844,+ | |||
}} | }} |
Latest revision as of 16:11, 24 July 2015
Short description: | p@chr13:44880829..44880844, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:44880829..44880844, + |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.49e-48 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.49e-48 | 42 |
defensive cell | 1.74e-41 | 48 |
phagocyte | 1.74e-41 | 48 |
monopoietic cell | 2.23e-32 | 59 |
monocyte | 2.23e-32 | 59 |
monoblast | 2.23e-32 | 59 |
promonocyte | 2.23e-32 | 59 |
macrophage dendritic cell progenitor | 3.34e-31 | 61 |
myeloid lineage restricted progenitor cell | 1.43e-28 | 66 |
granulocyte monocyte progenitor cell | 4.31e-28 | 67 |
myeloid leukocyte | 6.87e-26 | 72 |
myeloid cell | 5.35e-16 | 108 |
common myeloid progenitor | 5.35e-16 | 108 |
nongranular leukocyte | 8.65e-15 | 115 |
hematopoietic lineage restricted progenitor cell | 5.19e-14 | 120 |
cardiac mesenchymal cell | 1.23e-13 | 4 |
migratory trunk neural crest cell | 1.23e-13 | 4 |
leukocyte | 6.61e-12 | 136 |
hematopoietic oligopotent progenitor cell | 1.87e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.87e-09 | 161 |
hematopoietic stem cell | 6.70e-09 | 168 |
hematopoietic cell | 2.98e-08 | 177 |
mesenchymal cell | 6.43e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.68e-27 | 76 |
bone element | 6.87e-25 | 82 |
skeletal element | 2.51e-22 | 90 |
immune system | 1.77e-21 | 93 |
hematopoietic system | 3.54e-20 | 98 |
blood island | 3.54e-20 | 98 |
skeletal system | 1.08e-19 | 100 |
hemolymphoid system | 6.18e-18 | 108 |
lateral plate mesoderm | 8.39e-11 | 203 |
musculoskeletal system | 3.74e-10 | 167 |
mesoderm | 2.04e-08 | 315 |
mesoderm-derived structure | 2.04e-08 | 315 |
presumptive mesoderm | 2.04e-08 | 315 |
cranial nerve II | 4.89e-07 | 1 |
cranial nerve | 4.89e-07 | 1 |
nerve trunk | 4.89e-07 | 1 |
nerve connecting eye with brain | 4.89e-07 | 1 |
nerve | 4.89e-07 | 1 |
retinal neural layer | 4.89e-07 | 1 |
presumptive neural retina | 4.89e-07 | 1 |
mammalian vulva | 5.84e-07 | 1 |
external female genitalia | 5.84e-07 | 1 |