FFCP PHASE1:Hg19::chr14:22901705..22901750,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000535351,ENST00000537850,ENST00000541008,ENST00000545670,uc001wdt.1_5end | |||
|cluster_id=chr14:22901705..22901750,- | |||
|description=CAGE_peak_1_at_ENST00000535351_5end,CAGE_peak_1_at_ENST00000537850_5end,CAGE_peak_1_at_ENST00000541008_5end,CAGE_peak_1_at_ENST00000545670_5end,CAGE_peak_1_at_uc001wdt.1_5end | |||
|id=chr14:22901705..22901750,- | |||
|ontology_enrichment_celltype=CL:0000624!2.03e-07!6;CL:0000791!3.52e-07!18;CL:0000789!3.52e-07!18;CL:0002420!3.52e-07!18;CL:0002419!3.52e-07!18;CL:0000790!3.52e-07!18;CL:0000128!6.94e-07!7;CL:0000126!6.94e-07!7;CL:0000127!6.94e-07!7;CL:0002453!6.94e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0002605;3.58e-12;3!CL:0000128;6.07e-09;7!CL:0000126;6.07e-09;7!CL:0000127;6.07e-09;7!CL:0002549;1.24e-08;2!CL:0000764;2.61e-08;2!CL:0000558;2.61e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,4.01e-12,3;CL:0000037,4.42e-10,168;CL:0000763,7.67e-10,108;CL:0000049,7.67e-10,108;CL:0002032,8.84e-10,161;CL:0000837,8.84e-10,161;CL:0000988,3.04e-09,177;CL:0000128,6.47e-09,7;CL:0000126,6.47e-09,7;CL:0000127,6.47e-09,7;CL:0002453,6.47e-09,7;CL:0002549,1.24e-08,2;CL:0000764,2.42e-08,2;CL:0000765,2.42e-08,2;CL:0000050,2.42e-08,2;CL:0000038,2.42e-08,2;CL:0000558,2.42e-08,2;CL:0000547,2.42e-08,2;CL:0000549,2.42e-08,2;CL:0000550,2.42e-08,2;CL:0000552,2.42e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:8692!2.70e-12!31;DOID:1240!2.14e-09!39;DOID:2531!3.00e-09!51;DOID:0060083!3.00e-09!51 | |||
|ontology_enrichment_disease_v019=DOID:8692;7.84e-27;31!DOID:1240;9.29e-17;39!DOID:2531;1.06e-13;51!DOID:0060083;1.06e-13;51!DOID:74;2.42e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,3.40e-27,31;DOID:2531,1.74e-21,51;DOID:0060083,1.74e-21,51;DOID:1240,8.58e-21,39;DOID:74,2.17e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!5.96e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.11e-08;2!UBERON:0005058;1.11e-08;2!UBERON:0009113;1.11e-08;2!UBERON:0005629;1.24e-08;2!UBERON:0005358;1.24e-08;2!UBERON:0001886;1.24e-08;2!UBERON:0004086;1.24e-08;2!UBERON:0005282;1.24e-08;2!UBERON:0005281;1.24e-08;2!UBERON:0001829;5.39e-08;2!UBERON:0004177;3.40e-07;5!UBERON:0005057;3.40e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003408,5.84e-09,10;UBERON:0002370,6.05e-09,4;UBERON:0005058,6.05e-09,4;UBERON:0009113,6.05e-09,4;UBERON:0003295,6.05e-09,4;UBERON:0005562,6.05e-09,4;UBERON:0005629,1.24e-08,2;UBERON:0005358,1.24e-08,2;UBERON:0001886,1.24e-08,2;UBERON:0004086,1.24e-08,2;UBERON:0005282,1.24e-08,2;UBERON:0005281,1.24e-08,2;UBERON:0004177,1.85e-08,7;UBERON:0005057,1.85e-08,7;UBERON:0001829,3.76e-08,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738726348460727,0,5.01527554364941,26.6199468031883,11.6343261311952,2.00868223351684,0,0.0821005894499457,0,0,0,0.154816123316076,0,0,0,1.23947520928483,1.70603078984906,12.3312184520636,0,0.802177789880567,0,0.223915474239924,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.7908391442247,1.68152568894461,13.4325883235289,0.196709770113833,1.57204305099666,0.616804496998528,0.167186495390678,0.651844533267181,0,0,0.222820913770347,0.294605907474837,0.886135578334485,0.812411591295047,0.25618263945135,0,0.164437904603676,0,0.289803085735052,0.296573126324121,0,1.04535523804977,0.113309342697566,1.53288197440768,0.34362744548263,0.759059076058509,0,0,0.950452044448374,0.301150238155546,0.383959833463255,0,0.473554504088034,0,0,0,0.144824403882799,0,0,0,0,0,0,0,0,0.850813354476611,0.221729397462564,0.175669571386252,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.54072282934794,9.79499071615998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.37527504423104,3.52193736052904,0.207328115540772,0.144119953416961,0.25248486685276,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0.197030760201927,1.2937654491571,0.513372145118994,4.31960861178188,0,0,0.837581326671744,1.27587750330633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63111851975121,3.66009631434861,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0.356128142586949,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0.764637207142375,0,0.238231775457789,0,0,0.540031437238115,0.79312517629427,0,0,0,0,0,0,0,2.59453182862662,65.303331215137,4.86849240264931,0.649243880549111,81.7119788310165,14.1505501000579,0,5.01268954180134,2.20079311142084,0,0,0,1.03051603426729,0,0,0,0.19538809540204,3.06246791284767,1.23087398947712,0.270455678475983,3.99686361597384,1.4098700508785,0,0,0,0,0,0,0,0,0,0,0.222617410045812,0,66.0822527440619,0.597743964753209,0.828851746593443,0,0.102268682502155,0,0,0,1.61119057208048,0,0,0,0,0,0.185536196323703,0,0,0.61221999997337,0,0.227586896570999,1.01701460117107,0,0,0,0.173624994933292,0,0,0,0.110579259931225,0.295547618953547,0.219385397153973,0,0,0,0.113942055847001,0,0,0,0,0.0915975934018623,0,0,32.3379328173751,27.9235625592263,0,0,0,0,43.5486226406238,0,0,0,1.08194319871046,0,0.0884575645033392,0,0,0,0,0,0.802577647298789,0,0,0,0,0.394584402849391,0,2.75465485467441,0.063186579628488,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0.34945333648406,0,0,0,0,0.290967049465258,0,0,0,0,0.0633107959558787,0.195551382734803,0,0.426905989478705,0,0,0,0,0.14405479798815,0,0.235694034616795,0,0,0,0,0,0.136905378891993,1.27746588066972,0,0,0.279282401272254,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0.196854963029498,1.35477331305255,0,0,0,0,0,0,0,0.0607495566580247,0,0.157611414598396,0.0524545881349981,0,0.179287339332845,0,0,0,0,0,0,0,0,10.6720276974141,0,0.226624183040251,0,0,0.129282956361551,0,0,0,0,0,0,0.992332043623902,0,0.121792598380896,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0.249960815924213,0,0,0.235265819698172,2.34167452903441,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.0037594541211,0,0,0,0,0,0,0,1.25812753484717,0,0.33946505990805,0,0.495743057036009,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0.126831620387814,0,1.64477330057155,0,0,1.02209942111676,0,0,0,0,0,0.115233987555779,0.342976018874837,0,0.0657727735628491,0.118193840883968,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0.68732060563215,0,0,0,0,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0.0771741581079447,0,0,0,0,0.196308467114945,0,0,0,1.2217909337381,0.709036767709349,0,0.892769693028288,0,0,0,2.75237570042724,0,0,0.135982980381829,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,20.0225620491619,3.16581042908875,0,0,0,0.217716747896961,0,0.942928742204225,0.215166616178029,0,0,0.106727345877715,0,0,0,0,0,0,5.23311863336668,0 | |||
|short_description=p1@ENST00000535351,p1@ENST00000537850,p1@ENST00000541008,p1@ENST00000545670,p1@uc001wdt.1 | |||
}} |
Latest revision as of 19:11, 24 July 2015
Short description: | p1@ENST00000535351, p1@ENST00000537850, p1@ENST00000541008, p1@ENST00000545670, p1@uc001wdt.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000535351_5end, CAGE_peak_1_at_ENST00000537850_5end, CAGE_peak_1_at_ENST00000541008_5end, CAGE_peak_1_at_ENST00000545670_5end, CAGE_peak_1_at_uc001wdt.1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000535351, ENST00000537850, ENST00000541008, ENST00000545670, uc001wdt.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 4.01e-12 | 3 |
hematopoietic stem cell | 4.42e-10 | 168 |
myeloid cell | 7.67e-10 | 108 |
common myeloid progenitor | 7.67e-10 | 108 |
hematopoietic oligopotent progenitor cell | 8.84e-10 | 161 |
hematopoietic multipotent progenitor cell | 8.84e-10 | 161 |
hematopoietic cell | 3.04e-09 | 177 |
oligodendrocyte | 6.47e-09 | 7 |
macroglial cell | 6.47e-09 | 7 |
astrocyte | 6.47e-09 | 7 |
oligodendrocyte precursor cell | 6.47e-09 | 7 |
fibroblast of choroid plexus | 1.24e-08 | 2 |
erythroid lineage cell | 2.42e-08 | 2 |
erythroblast | 2.42e-08 | 2 |
megakaryocyte-erythroid progenitor cell | 2.42e-08 | 2 |
erythroid progenitor cell | 2.42e-08 | 2 |
reticulocyte | 2.42e-08 | 2 |
proerythroblast | 2.42e-08 | 2 |
basophilic erythroblast | 2.42e-08 | 2 |
polychromatophilic erythroblast | 2.42e-08 | 2 |
orthochromatic erythroblast | 2.42e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
gland of gut | 5.84e-09 | 10 |
thymus | 6.05e-09 | 4 |
hemolymphoid system gland | 6.05e-09 | 4 |
thymic region | 6.05e-09 | 4 |
pharyngeal gland | 6.05e-09 | 4 |
thymus primordium | 6.05e-09 | 4 |
vascular plexus | 1.24e-08 | 2 |
ventricle of nervous system | 1.24e-08 | 2 |
choroid plexus | 1.24e-08 | 2 |
brain ventricle | 1.24e-08 | 2 |
ventricular system of brain | 1.24e-08 | 2 |
ventricular system of central nervous system | 1.24e-08 | 2 |
hemopoietic organ | 1.85e-08 | 7 |
immune organ | 1.85e-08 | 7 |
major salivary gland | 3.76e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 3.40e-27 | 31 |
hematologic cancer | 1.74e-21 | 51 |
immune system cancer | 1.74e-21 | 51 |
leukemia | 8.58e-21 | 39 |
hematopoietic system disease | 2.17e-08 | 2 |