FFCP PHASE1:Hg19::chr19:45281215..45281224,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=27bp_to_CU688574_5end | |association_with_transcript=27bp_to_CU688574_5end | ||
|cluster_id=chr19:45281215..45281224,+ | |||
|coexpression_cluster_id=C1455 | |||
|description=CAGE_peak_2_at_CU688574_5end | |description=CAGE_peak_2_at_CU688574_5end | ||
|id=chr19:45281215..45281224,+ | |id=chr19:45281215..45281224,+ | ||
|ontology_enrichment_celltype=CL:0000066!3.83e-28!254;CL:0002076!5.28e-26!43;CL:0000223!2.71e-20!59;CL:0002368!3.39e-14!13;CL:0002251!3.26e-13!21;CL:0002159!2.55e-11!13;CL:0002202!2.70e-09!9;CL:0002632!2.70e-09!9;CL:0002077!2.79e-09!33;CL:0000244!6.89e-07!4;CL:0000731!6.89e-07!4 | |ontology_enrichment_celltype=CL:0000066!3.83e-28!254;CL:0002076!5.28e-26!43;CL:0000223!2.71e-20!59;CL:0002368!3.39e-14!13;CL:0002251!3.26e-13!21;CL:0002159!2.55e-11!13;CL:0002202!2.70e-09!9;CL:0002632!2.70e-09!9;CL:0002077!2.79e-09!33;CL:0000244!6.89e-07!4;CL:0000731!6.89e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002076;2.81e-26;42!CL:0002368;2.03e-22;13!CL:0002202;1.41e-20;9!CL:0002632;1.41e-20;9!CL:0002159;3.69e-16;14!CL:0002328;1.78e-12;3!CL:0000307;1.85e-12;3!CL:0002231;1.04e-11;3!CL:0002251;1.01e-10;20!CL:0000362;3.30e-10;9!CL:0000575;2.98e-09;2!CL:0000244;5.49e-09;4!CL:0000731;5.49e-09;4!CL:0002077;2.10e-08;34!CL:0000317;4.04e-08;2!CL:1000448;4.04e-08;2!CL:0002308;4.04e-08;2!CL:0002140;4.04e-08;2!CL:0000312;1.74e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,3.42e-34,42;CL:0000066,9.64e-27,253;CL:0000223,7.88e-26,58;CL:0002368,1.02e-22,13;CL:0002202,9.35e-21,9;CL:0002632,9.35e-21,9;CL:0002159,2.45e-16,14;CL:0002328,9.50e-13,3;CL:0000068,1.63e-12,3;CL:0000069,1.63e-12,3;CL:0000307,1.63e-12,3;CL:0000377,1.63e-12,3;CL:0002231,1.24e-11,3;CL:0002251,1.23e-10,20;CL:0000362,2.92e-10,9;CL:0002077,2.21e-09,34;CL:0000575,3.18e-09,2;CL:0000244,4.49e-09,4;CL:0000731,4.49e-09,4;CL:0000317,3.14e-08,2;CL:1000448,3.14e-08,2;CL:0002308,3.14e-08,2;CL:0002140,3.14e-08,2;CL:0002321,1.20e-07,250;CL:0000312,1.77e-07,5;CL:0000076,3.78e-07,63 | |||
|ontology_enrichment_development_v019=CL:0000223;1.60e-14;58!CL:0000377;1.85e-12;3 | |||
|ontology_enrichment_disease=DOID:1749!2.32e-11!14;DOID:305!2.31e-10!106;DOID:0050687!2.78e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;6.33e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,9.18e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.87e-18!169;UBERON:0000925!2.87e-18!169;UBERON:0006595!2.87e-18!169;UBERON:0001007!1.96e-13!155;UBERON:0001555!1.96e-13!155;UBERON:0007026!1.96e-13!155;UBERON:0000344!2.20e-11!12;UBERON:0004921!9.46e-10!129;UBERON:0004185!9.46e-10!129;UBERON:0005911!2.78e-09!82;UBERON:0000161!4.05e-09!35;UBERON:0006554!4.35e-09!44;UBERON:0001008!9.21e-09!45;UBERON:0000464!1.63e-08!104;UBERON:0007196!1.82e-08!14;UBERON:0001558!1.82e-08!14;UBERON:0000077!2.09e-08!130;UBERON:0000466!3.77e-08!126;UBERON:0000365!3.84e-08!5;UBERON:0003729!1.05e-07!5;UBERON:0001004!1.62e-07!72;UBERON:0002294!3.45e-07!7;UBERON:0001173!3.45e-07!7;UBERON:0004912!3.45e-07!7;UBERON:0005153!5.51e-07!37;UBERON:0000062!8.20e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0000485;2.15e-13;7!UBERON:0004815;1.78e-12;3!UBERON:0002031;1.78e-12;3!UBERON:0007196;6.44e-12;15!UBERON:0001558;6.44e-12;15!UBERON:0005911;1.97e-11;36!UBERON:0003929;1.16e-08;7!UBERON:0000344;3.93e-08;20!UBERON:0002419;4.04e-08;2!UBERON:0007771;4.04e-08;2!UBERON:0003297;4.04e-08;2!UBERON:0001821;4.04e-08;2!UBERON:0003487;4.04e-08;2!UBERON:0001820;4.04e-08;2!UBERON:0004807;9.82e-08;22!UBERON:0000486;1.19e-07;12!UBERON:0002185;1.22e-07;5!UBERON:0003350;1.40e-07;8!UBERON:0005178;2.55e-07;34!UBERON:0002224;2.55e-07;34!UBERON:0000365;2.88e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,9.50e-13,3;UBERON:0002031,9.50e-13,3;UBERON:0007196,5.09e-12,15;UBERON:0001558,5.09e-12,15;UBERON:0000485,1.70e-10,9;UBERON:0004119,2.52e-09,160;UBERON:0000925,2.52e-09,160;UBERON:0006595,2.52e-09,160;UBERON:0005157,4.19e-09,47;UBERON:0005153,2.97e-08,37;UBERON:0002419,3.14e-08,2;UBERON:0007771,3.14e-08,2;UBERON:0003297,3.14e-08,2;UBERON:0001821,3.14e-08,2;UBERON:0003487,3.14e-08,2;UBERON:0001820,3.14e-08,2;UBERON:0005089,3.14e-08,2;UBERON:0005088,3.14e-08,2;UBERON:0000344,3.70e-08,20;UBERON:0005911,4.94e-08,82;UBERON:0002185,8.45e-08,5;UBERON:0005178,8.91e-08,34;UBERON:0002224,8.91e-08,34;UBERON:0003350,1.12e-07,8;UBERON:0005181,1.66e-07,35;UBERON:0000365,2.45e-07,5;UBERON:0001004,5.40e-07,74 | |||
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| ||
|short_description=p2@CU688574 | |short_description=p2@CU688574 | ||
}} | }} |
Latest revision as of 14:44, 27 July 2015
Short description: | p2@CU688574 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CU688574_5end |
Coexpression cluster: | C1455_Tracheal_Corneal_Keratinocyte_Mammary_Urothelial_Bronchial_Esophageal |
Association with transcript: | 27bp_to_CU688574_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 3.42e-34 | 42 |
epithelial cell | 9.64e-27 | 253 |
endodermal cell | 7.88e-26 | 58 |
respiratory epithelial cell | 1.02e-22 | 13 |
epithelial cell of tracheobronchial tree | 9.35e-21 | 9 |
epithelial cell of lower respiratory tract | 9.35e-21 | 9 |
general ecto-epithelial cell | 2.45e-16 | 14 |
bronchial epithelial cell | 9.50e-13 | 3 |
duct epithelial cell | 1.63e-12 | 3 |
branched duct epithelial cell | 1.63e-12 | 3 |
tracheal epithelial cell | 1.63e-12 | 3 |
tracheoblast | 1.63e-12 | 3 |
epithelial cell of prostate | 1.24e-11 | 3 |
epithelial cell of alimentary canal | 1.23e-10 | 20 |
epidermal cell | 2.92e-10 | 9 |
ecto-epithelial cell | 2.21e-09 | 34 |
corneal epithelial cell | 3.18e-09 | 2 |
transitional epithelial cell | 4.49e-09 | 4 |
urothelial cell | 4.49e-09 | 4 |
sebum secreting cell | 3.14e-08 | 2 |
epithelial cell of sweat gland | 3.14e-08 | 2 |
epithelial cell of skin gland | 3.14e-08 | 2 |
acinar cell of sebaceous gland | 3.14e-08 | 2 |
embryonic cell | 1.20e-07 | 250 |
keratinocyte | 1.77e-07 | 5 |
squamous epithelial cell | 3.78e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 9.50e-13 | 3 |
epithelium of bronchus | 9.50e-13 | 3 |
tracheobronchial tree | 5.09e-12 | 15 |
lower respiratory tract | 5.09e-12 | 15 |
simple columnar epithelium | 1.70e-10 | 9 |
endoderm-derived structure | 2.52e-09 | 160 |
endoderm | 2.52e-09 | 160 |
presumptive endoderm | 2.52e-09 | 160 |
epithelial fold | 4.19e-09 | 47 |
epithelial bud | 2.97e-08 | 37 |
skin gland | 3.14e-08 | 2 |
epidermis gland | 3.14e-08 | 2 |
gland of integumental system | 3.14e-08 | 2 |
sebaceous gland | 3.14e-08 | 2 |
skin sebaceous gland | 3.14e-08 | 2 |
sweat gland | 3.14e-08 | 2 |
sweat gland placode | 3.14e-08 | 2 |
sebaceous gland placode | 3.14e-08 | 2 |
mucosa | 3.70e-08 | 20 |
endo-epithelium | 4.94e-08 | 82 |
bronchus | 8.45e-08 | 5 |
thoracic cavity element | 8.91e-08 | 34 |
thoracic cavity | 8.91e-08 | 34 |
epithelium of mucosa | 1.12e-07 | 8 |
thoracic segment organ | 1.66e-07 | 35 |
urothelium | 2.45e-07 | 5 |
respiratory system | 5.40e-07 | 74 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 9.18e-09 | 14 |