FFCP PHASE1:Hg19::chr1:183197647..183197676,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:183197647..183197676,+
|short_description=p@chr1:183197647..183197676,+
|description=CAGE_peak_at_chr1:183197647..183197676,+
|association_with_transcript=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:183197647..183197676,+ | |||
|coexpression_cluster_id=C268 | |||
|description=CAGE_peak_at_chr1:183197647..183197676,+ | |||
|id=chr1:183197647..183197676,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.20e-33!254;CL:0002076!3.55e-30!43;CL:0000223!1.33e-21!59;CL:0002368!1.79e-17!13;CL:0002159!2.69e-14!13;CL:0002251!5.64e-13!21;CL:0000244!5.14e-11!4;CL:0000731!5.14e-11!4;CL:0002077!2.30e-09!33;CL:0002202!2.96e-09!9;CL:0002632!2.96e-09!9;CL:0000076!3.52e-09!62;CL:0002621!1.70e-08!3;CL:0002166!1.96e-08!3;CL:0000220!2.21e-08!246;CL:0002321!3.16e-08!248;CL:0000068!3.74e-08!3;CL:0000069!3.74e-08!3;CL:0000307!3.74e-08!3;CL:0000377!3.74e-08!3;CL:0000622!7.54e-08!5;CL:0000063!8.11e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0002368;6.02e-32;13!CL:0000244;4.90e-28;4!CL:0000731;4.90e-28;4!CL:0002159;1.21e-22;14!CL:0002621;3.99e-21;3!CL:0000307;4.49e-20;3!CL:0002076;5.54e-19;42!CL:0000317;1.24e-14;2!CL:1000448;1.24e-14;2!CL:0002308;1.24e-14;2!CL:0002140;1.24e-14;2!CL:0000362;4.84e-12;9!CL:0002202;6.28e-12;9!CL:0002632;6.28e-12;9!CL:0002166;3.11e-10;3!CL:0002231;5.86e-10;3!CL:0002077;6.57e-10;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,7.88e-32,13;CL:0000244,4.58e-28,4;CL:0000731,4.58e-28,4;CL:0002076,1.76e-24,42;CL:0002159,8.56e-23,14;CL:0002621,5.43e-21,3;CL:0000068,4.97e-20,3;CL:0000069,4.97e-20,3;CL:0000307,4.97e-20,3;CL:0000377,4.97e-20,3;CL:0000223,4.82e-17,58;CL:0000066,5.39e-16,253;CL:0000317,1.12e-14,2;CL:1000448,1.12e-14,2;CL:0002308,1.12e-14,2;CL:0002140,1.12e-14,2;CL:0000362,3.67e-12,9;CL:0002202,6.56e-12,9;CL:0002632,6.56e-12,9;CL:0002077,1.78e-11,34;CL:0002166,2.91e-10,3;CL:0002231,6.00e-10,3;CL:0002321,1.43e-08,250 | |||
|ontology_enrichment_development_v019=CL:0000377;4.49e-20;3!CL:0000223;6.21e-12;58 | |||
|ontology_enrichment_disease=DOID:1749!4.35e-13!14;DOID:305!3.20e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005910!2.96e-14!6;UBERON:0004119!6.24e-14!169;UBERON:0000925!6.24e-14!169;UBERON:0006595!6.24e-14!169;UBERON:0000365!1.14e-12!5;UBERON:0003729!8.76e-11!5;UBERON:0005911!1.87e-10!82;UBERON:0001004!1.05e-09!72;UBERON:0000161!2.97e-09!35;UBERON:0003343!1.01e-08!4;UBERON:0004785!1.01e-08!4;UBERON:0001949!1.70e-08!3;UBERON:0000344!7.46e-08!12;UBERON:0001007!2.62e-07!155;UBERON:0001555!2.62e-07!155;UBERON:0007026!2.62e-07!155;UBERON:0000166!4.03e-07!21;UBERON:0006554!5.01e-07!44;UBERON:0001008!8.44e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;2.53e-27;12!UBERON:0000365;1.76e-22;5!UBERON:0001949;3.99e-21;3!UBERON:0005910;9.01e-19;6!UBERON:0002419;1.24e-14;2!UBERON:0007771;1.24e-14;2!UBERON:0003297;1.24e-14;2!UBERON:0001821;1.24e-14;2!UBERON:0003487;1.24e-14;2!UBERON:0001820;1.24e-14;2!UBERON:0010371;1.21e-09;31!UBERON:0003929;2.34e-09;7!UBERON:0003126;6.43e-09;7!UBERON:0001005;6.43e-09;7!UBERON:0005911;1.12e-08;36!UBERON:0003350;3.04e-08;8!UBERON:0001828;3.04e-08;8!UBERON:0001708;6.99e-08;4!UBERON:0008895;6.99e-08;4!UBERON:0001003;2.83e-07;15!UBERON:0007376;2.83e-07;15!UBERON:0007196;3.29e-07;15!UBERON:0001558;3.29e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,1.67e-22,5;UBERON:0001949,5.43e-21,3;UBERON:0005910,8.63e-19,6;UBERON:0002419,1.12e-14,2;UBERON:0007771,1.12e-14,2;UBERON:0003297,1.12e-14,2;UBERON:0001821,1.12e-14,2;UBERON:0003487,1.12e-14,2;UBERON:0001820,1.12e-14,2;UBERON:0005089,1.12e-14,2;UBERON:0005088,1.12e-14,2;UBERON:0001004,5.32e-09,74;UBERON:0003126,6.71e-09,7;UBERON:0001005,6.71e-09,7;UBERON:0004119,9.73e-09,160;UBERON:0000925,9.73e-09,160;UBERON:0006595,9.73e-09,160;UBERON:0003350,3.40e-08,8;UBERON:0001828,3.40e-08,8;UBERON:0001708,6.65e-08,4;UBERON:0008895,6.65e-08,4;UBERON:0003102,1.44e-07,99;UBERON:0001003,2.41e-07,15;UBERON:0007376,2.41e-07,15;UBERON:0007383,2.41e-07,15;UBERON:0007196,3.38e-07,15;UBERON:0001558,3.38e-07,15;UBERON:0000065,8.10e-07,54 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,1.52908960491121,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.90361775633475,3.32778609150109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.0654895377488563,1.45718115317017,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.09217365061275,3.27295344709002,2.29443676311203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75600456653801,0,1.50793458617446,0.833296006426766,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,12.0947132303179,2.83550194484773,0.716468181622786,0.290633938513962,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0,4.21063587636898,1.47329582297434,0,0,0,0.451199612907412,0.462092022626489,0,0,0.633309773357254,0,0,0,0,0,0,0.509752546090077,0,0,0,0,0,0,0,0,0,0,2.29706215198469,3.90036147621913,0,0,0,0,0,0,0,0,0,5.78497203763423,4.80475168412765,1.02090169995667,4.75441570021085,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0.78494864019923,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32687795048244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.63577591633371,1.34060455107157,1.08890984861323,0,2.58303223602738,5.05414427002877,3.54744122829341,6.89170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0.359473404589307,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.227586896570999,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0,0,0.0897576444097721,0,0,0,1.5991043280559,0,0,0,0,0,0,0,0,1.26598838716816,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0.173559738335131,0.489961987071888,0.0870592065804026,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0.0801588202515337,0,0,0.432271251462318,0,0,0.288109595976299,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0.105600336519406,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463044948647668,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0.279759015438889,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.235939446695481,0.366857197043358,0.231051332300676,0,0,0,0,0,0,0,0,0.739280431085226,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0.414432328326074,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0.0802413666891683,0,0,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0.0636471582781649,0,0,0,0,0,0,0.162806537221949,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:183197647..183197676,+ | |||
}} | }} |
Latest revision as of 01:09, 28 July 2015
Short description: | p@chr1:183197647..183197676, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:183197647..183197676, + |
Coexpression cluster: | C268_Mallassezderived_Urothelial_Gingival_Small_Bronchial_Tracheal_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 7.88e-32 | 13 |
transitional epithelial cell | 4.58e-28 | 4 |
urothelial cell | 4.58e-28 | 4 |
endo-epithelial cell | 1.76e-24 | 42 |
general ecto-epithelial cell | 8.56e-23 | 14 |
gingival epithelial cell | 5.43e-21 | 3 |
duct epithelial cell | 4.97e-20 | 3 |
branched duct epithelial cell | 4.97e-20 | 3 |
tracheal epithelial cell | 4.97e-20 | 3 |
tracheoblast | 4.97e-20 | 3 |
endodermal cell | 4.82e-17 | 58 |
epithelial cell | 5.39e-16 | 253 |
sebum secreting cell | 1.12e-14 | 2 |
epithelial cell of sweat gland | 1.12e-14 | 2 |
epithelial cell of skin gland | 1.12e-14 | 2 |
acinar cell of sebaceous gland | 1.12e-14 | 2 |
epidermal cell | 3.67e-12 | 9 |
epithelial cell of tracheobronchial tree | 6.56e-12 | 9 |
epithelial cell of lower respiratory tract | 6.56e-12 | 9 |
ecto-epithelial cell | 1.78e-11 | 34 |
epithelial cell of Malassez | 2.91e-10 | 3 |
epithelial cell of prostate | 6.00e-10 | 3 |
embryonic cell | 1.43e-08 | 250 |
Ontology term | p-value | n |
---|---|---|
urothelium | 1.67e-22 | 5 |
gingival epithelium | 5.43e-21 | 3 |
transitional epithelium | 8.63e-19 | 6 |
skin gland | 1.12e-14 | 2 |
epidermis gland | 1.12e-14 | 2 |
gland of integumental system | 1.12e-14 | 2 |
sebaceous gland | 1.12e-14 | 2 |
skin sebaceous gland | 1.12e-14 | 2 |
sweat gland | 1.12e-14 | 2 |
sweat gland placode | 1.12e-14 | 2 |
sebaceous gland placode | 1.12e-14 | 2 |
respiratory system | 5.32e-09 | 74 |
trachea | 6.71e-09 | 7 |
respiratory airway | 6.71e-09 | 7 |
endoderm-derived structure | 9.73e-09 | 160 |
endoderm | 9.73e-09 | 160 |
presumptive endoderm | 9.73e-09 | 160 |
epithelium of mucosa | 3.40e-08 | 8 |
gingiva | 3.40e-08 | 8 |
jaw skeleton | 6.65e-08 | 4 |
splanchnocranium | 6.65e-08 | 4 |
surface structure | 1.44e-07 | 99 |
skin epidermis | 2.41e-07 | 15 |
outer epithelium | 2.41e-07 | 15 |
enveloping layer of ectoderm | 2.41e-07 | 15 |
tracheobronchial tree | 3.38e-07 | 15 |
lower respiratory tract | 3.38e-07 | 15 |
respiratory tract | 8.10e-07 | 54 |