FFCP PHASE1:Hg19::chr1:189279755..189279759,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:189279755..189279759,+ | |||
|coexpression_cluster_id=C132 | |||
|description=CAGE_peak_at_chr1:189279755..189279759,+ | |description=CAGE_peak_at_chr1:189279755..189279759,+ | ||
|id=chr1:189279755..189279759,+ | |id=chr1:189279755..189279759,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002127;4.10e-23;1!CL:0000911;4.10e-23;1!CL:0000814;4.10e-23;1!CL:0000322;1.30e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,4.10e-23,1;CL:0000914,4.10e-23,1;CL:0000911,4.10e-23,1;CL:0000814,4.10e-23,1;CL:0002042,4.10e-23,1;CL:0002039,4.10e-23,1;CL:0002040,4.10e-23,1;CL:0002041,4.10e-23,1;CL:0000893,2.90e-12,2;CL:0002489,2.90e-12,2;CL:0000809,2.90e-12,2;CL:0000808,2.90e-12,2;CL:0000894,2.90e-12,2;CL:0000806,2.90e-12,2;CL:0000807,2.90e-12,2;CL:0000805,2.90e-12,2;CL:0002425,2.90e-12,2;CL:0000322,1.51e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0005425;4.10e-23;1!CL:0002425;2.90e-12;2!UBERON:0003056;1.30e-08;3 | |||
|ontology_enrichment_disease=DOID:162!8.27e-17!235;DOID:305!1.24e-16!106;DOID:14566!3.48e-16!239;DOID:0050687!6.38e-15!143;DOID:0050686!2.10e-08!137;DOID:0050615!3.29e-07!16;DOID:299!6.73e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:3908;1.93e-18;5!DOID:1240;7.09e-16;39!DOID:3910;2.90e-12;2!DOID:1036;5.37e-12;8!DOID:2531;8.41e-12;51!DOID:0060083;8.41e-12;51!DOID:8692;8.53e-12;31!DOID:3905;1.07e-10;9!DOID:4556;1.30e-08;3!DOID:1324;8.83e-07;15 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,2.14e-20,39;DOID:3908,1.93e-18,5;DOID:2531,1.28e-15,51;DOID:0060083,1.28e-15,51;DOID:3910,3.62e-12,2;DOID:1036,5.52e-12,8;DOID:8692,6.57e-12,31;DOID:3905,1.07e-10,9;DOID:0050686,5.09e-10,137;DOID:4556,1.12e-08,3;DOID:1324,8.83e-07,15 | |||
|ontology_enrichment_uberon=UBERON:0005911!4.15e-09!82;UBERON:0000344!5.35e-07!12;UBERON:0004119!7.70e-07!169;UBERON:0000925!7.70e-07!169;UBERON:0006595!7.70e-07!169;UBERON:0001007!9.02e-07!155;UBERON:0001555!9.02e-07!155;UBERON:0007026!9.02e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;4.10e-23;1!UBERON:0001785;4.10e-23;1!UBERON:0002464;4.10e-23;1!UBERON:0004904;4.10e-23;1!UBERON:0001021;4.10e-23;1!UBERON:0004903;2.90e-12;2!UBERON:0003714;2.90e-12;2!UBERON:0005162;2.90e-12;2!UBERON:0000122;2.90e-12;2!UBERON:0002173;2.90e-12;2!UBERON:0002186;2.90e-12;2!UBERON:0004821;1.30e-08;3!UBERON:0007499;1.30e-08;3!UBERON:0003215;1.30e-08;3!UBERON:0010368;1.30e-08;3!UBERON:0009911;1.30e-08;3!UBERON:0002299;1.30e-08;3!UBERON:0006524;1.30e-08;3!UBERON:0008874;1.30e-08;3!UBERON:0002169;1.30e-08;3!UBERON:0004894;1.30e-08;3!UBERON:0009856;9.10e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,3.28e-23,1;UBERON:0001785,3.28e-23,1;UBERON:0002464,3.28e-23,1;UBERON:0004904,3.28e-23,1;UBERON:0001021,3.28e-23,1;UBERON:0003902,3.28e-23,1;UBERON:0005425,3.28e-23,1;UBERON:0003714,2.59e-12,2;UBERON:0005162,2.59e-12,2;UBERON:0000122,2.59e-12,2;UBERON:0004903,3.62e-12,2;UBERON:0002173,3.62e-12,2;UBERON:0002186,3.62e-12,2;UBERON:0004821,1.51e-08,3;UBERON:0003215,1.51e-08,3;UBERON:0010368,1.51e-08,3;UBERON:0009911,1.51e-08,3;UBERON:0002299,1.51e-08,3;UBERON:0006524,1.51e-08,3;UBERON:0008874,1.51e-08,3;UBERON:0002169,1.51e-08,3;UBERON:0004894,1.51e-08,3;UBERON:0004807,1.11e-07,28;UBERON:0001781,8.61e-07,4;UBERON:0002370,9.11e-07,4;UBERON:0005058,9.11e-07,4;UBERON:0009113,9.11e-07,4;UBERON:0003295,9.11e-07,4;UBERON:0005562,9.11e-07,4 | |||
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| ||
|short_description=p@chr1:189279755..189279759,+ | |short_description=p@chr1:189279755..189279759,+ | ||
}} | }} |
Latest revision as of 01:35, 28 July 2015
Short description: | p@chr1:189279755..189279759, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:189279755..189279759, + |
Coexpression cluster: | C132_acute_small_Dendritic_Macrophage_CD14_Neutrophils_Monocytederived |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 4.10e-23 | 1 |
immature NK T cell | 4.10e-23 | 1 |
effector T cell | 4.10e-23 | 1 |
mature NK T cell | 4.10e-23 | 1 |
immature NK T cell stage IV | 4.10e-23 | 1 |
immature NK T cell stage I | 4.10e-23 | 1 |
immature NK T cell stage II | 4.10e-23 | 1 |
immature NK T cell stage III | 4.10e-23 | 1 |
thymocyte | 2.90e-12 | 2 |
double negative thymocyte | 2.90e-12 | 2 |
double-positive, alpha-beta thymocyte | 2.90e-12 | 2 |
DN4 thymocyte | 2.90e-12 | 2 |
DN1 thymic pro-T cell | 2.90e-12 | 2 |
DN2 thymocyte | 2.90e-12 | 2 |
DN3 thymocyte | 2.90e-12 | 2 |
immature single positive thymocyte | 2.90e-12 | 2 |
early T lineage precursor | 2.90e-12 | 2 |
pneumocyte | 1.51e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 3.28e-23 | 1 |
cranial nerve | 3.28e-23 | 1 |
nerve trunk | 3.28e-23 | 1 |
nerve connecting eye with brain | 3.28e-23 | 1 |
nerve | 3.28e-23 | 1 |
retinal neural layer | 3.28e-23 | 1 |
presumptive neural retina | 3.28e-23 | 1 |
neural tissue | 2.59e-12 | 2 |
multi cell component structure | 2.59e-12 | 2 |
neuron projection bundle | 2.59e-12 | 2 |
bronchoalveolar duct junction | 3.62e-12 | 2 |
alveolar duct | 3.62e-12 | 2 |
bronchiole | 3.62e-12 | 2 |
pulmonary alveolus epithelium | 1.51e-08 | 3 |
alveolus | 1.51e-08 | 3 |
pulmonary lobule | 1.51e-08 | 3 |
lobule | 1.51e-08 | 3 |
alveolus of lung | 1.51e-08 | 3 |
alveolar system | 1.51e-08 | 3 |
pulmonary acinus | 1.51e-08 | 3 |
alveolar sac | 1.51e-08 | 3 |
alveolar wall | 1.51e-08 | 3 |
respiratory system epithelium | 1.11e-07 | 28 |
layer of retina | 8.61e-07 | 4 |
thymus | 9.11e-07 | 4 |
hemolymphoid system gland | 9.11e-07 | 4 |
thymic region | 9.11e-07 | 4 |
pharyngeal gland | 9.11e-07 | 4 |
thymus primordium | 9.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
leukemia | 2.14e-20 | 39 |
non-small cell lung carcinoma | 1.93e-18 | 5 |
hematologic cancer | 1.28e-15 | 51 |
immune system cancer | 1.28e-15 | 51 |
lung adenocarcinoma | 3.62e-12 | 2 |
chronic leukemia | 5.52e-12 | 8 |
myeloid leukemia | 6.57e-12 | 31 |
lung carcinoma | 1.07e-10 | 9 |
organ system cancer | 5.09e-10 | 137 |
lung large cell carcinoma | 1.12e-08 | 3 |
lung cancer | 8.83e-07 | 15 |