FFCP PHASE1:Hg19::chr2:238267161..238267198,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr2:238267161..238267198,+ | |||
|coexpression_cluster_id=C4204 | |||
|description=CAGE_peak_at_chr2:238267161..238267198,+ | |||
|id=chr2:238267161..238267198,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.68e-39!180;CL:0000057!3.14e-27!75;CL:0000183!2.24e-14!59;CL:0000680!5.74e-14!57;CL:0000056!5.74e-14!57;CL:0000355!5.74e-14!57;CL:0000187!3.15e-13!54;CL:0000393!2.17e-11!60;CL:0000211!2.17e-11!60;CL:0002620!3.46e-11!23;CL:0000048!1.60e-10!430;CL:0000723!1.10e-09!436;CL:0000034!2.66e-09!444;CL:0000188!1.63e-07!9;CL:0000192!2.89e-07!42;CL:0000514!2.89e-07!42;CL:0002570!3.89e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.74e-14;23!CL:0000057;7.00e-12;73!CL:0002320;4.03e-09;188!CL:0000188;4.90e-09;9!CL:0000134;7.15e-09;55!CL:0002570;1.00e-08;8!CL:0000723;2.80e-08;61!CL:0000187;4.10e-08;55!CL:0000048;1.23e-07;58!CL:0000499;8.03e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.18e-31,76;CL:0000048,6.65e-17,427;CL:0000723,4.77e-16,433;CL:0000034,5.93e-15,441;CL:0002620,2.90e-14,23;CL:0000680,3.09e-12,58;CL:0000056,3.09e-12,58;CL:0000355,3.09e-12,58;CL:0000187,6.65e-12,55;CL:0002320,3.14e-11,361;CL:0000393,1.10e-09,61;CL:0000211,1.10e-09,61;CL:0000188,3.49e-09,9;CL:0002570,1.05e-08,8;CL:0000134,1.27e-08,354;CL:0000219,4.24e-07,386;CL:0000499,8.08e-07,28 | |||
|ontology_enrichment_development_v019=CL:0000355;1.51e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.55e-18!83;UBERON:0002329!2.55e-18!83;UBERON:0003077!2.55e-18!83;UBERON:0003059!2.55e-18!83;UBERON:0007282!2.55e-18!83;UBERON:0009618!2.55e-18!83;UBERON:0007285!2.55e-18!83;UBERON:0004290!1.08e-15!70;UBERON:0002385!7.25e-15!63;UBERON:0001015!7.25e-15!63;UBERON:0000383!7.25e-15!63;UBERON:0001134!2.58e-14!61;UBERON:0002036!2.58e-14!61;UBERON:0003082!2.58e-14!61;UBERON:0005256!9.19e-13!143;UBERON:0000486!2.19e-12!82;UBERON:0003102!2.10e-09!95;UBERON:0002100!3.71e-08!216;UBERON:0002199!6.98e-08!45;UBERON:0002416!6.98e-08!45;UBERON:0000475!1.49e-07!365;UBERON:0000948!1.91e-07!24;UBERON:0005498!1.91e-07!24;UBERON:0004140!1.91e-07!24;UBERON:0009881!1.91e-07!24;UBERON:0004141!1.91e-07!24;UBERON:0003084!1.91e-07!24;UBERON:0007005!1.91e-07!24;UBERON:0004139!1.91e-07!24;UBERON:0004291!1.91e-07!24;UBERON:0007100!1.94e-07!27;UBERON:0003104!5.00e-07!238;UBERON:0009142!5.00e-07!238;UBERON:0000481!5.33e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.14e-10;31!UBERON:0001015;1.14e-10;31!UBERON:0000383;1.14e-10;31!UBERON:0002384;6.41e-10;198!UBERON:0002204;1.72e-08;70!UBERON:0001134;4.88e-08;16!UBERON:0002036;4.88e-08;16!UBERON:0004905;3.08e-07;8!UBERON:0000982;3.08e-07;8!UBERON:0004770;3.08e-07;8!UBERON:0002199;8.67e-07;46!UBERON:0002416;8.67e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,1.61e-14,71;UBERON:0003059,1.61e-14,71;UBERON:0007282,1.61e-14,71;UBERON:0004290,1.61e-14,71;UBERON:0009618,1.61e-14,71;UBERON:0003077,4.04e-14,72;UBERON:0007285,4.04e-14,72;UBERON:0007524,9.84e-14,73;UBERON:0007503,2.84e-13,78;UBERON:0002385,1.74e-12,64;UBERON:0001015,1.74e-12,64;UBERON:0000383,1.74e-12,64;UBERON:0001134,2.11e-12,62;UBERON:0002036,2.11e-12,62;UBERON:0003082,2.11e-12,62;UBERON:0000486,3.19e-12,83;UBERON:0002384,7.26e-11,371;UBERON:0005256,8.08e-11,122;UBERON:0003104,1.55e-10,160;UBERON:0009142,1.55e-10,160;UBERON:0002199,3.63e-10,46;UBERON:0002416,3.63e-10,46;UBERON:0003102,7.07e-09,99;UBERON:0002097,6.17e-08,41;UBERON:0000926,7.11e-08,315;UBERON:0004120,7.11e-08,315;UBERON:0006603,7.11e-08,315;UBERON:0004905,3.10e-07,8;UBERON:0000982,3.10e-07,8;UBERON:0004770,3.10e-07,8 | |||
|phase1_expression=1.81678379270557,7.27941781229343,0.281908808191942,2.00146596706261,2.68176656656373,0,0,15.7929968356708,14.3652095509911,0,0,0.655324116390517,0.263766978228454,18.1936538851269,11.930305526205,6.05092631806598,4.21886169616784,8.76372108464848,6.34312638427659,0.738726348460727,0.408001382488506,1.25381888591235,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,4.02420515822182,4.34732710268003,23.8549840573814,1.50401373190767,17.0918892373772,0.795285947051099,3.40644409211845,0.189069634328136,0.221729397462564,0.175669571386252,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.96971951695318,2.65924074495618,3.44263870114369,25.8152958673932,4.61068896857864,1.12135520028461,1.06748995729705,5.92002116201184,1.55605517699883,3.63718814588158,3.59616186849609,4.69208025699287,8.64263886719998,2.34321431833797,11.2377627658915,0,17.6349443051125,3.05329696473789,2.10434827678571,3.08991774744947,9.1869377064702,6.26455018290017,4.75298593408521,3.56400857184616,12.6106133932064,0,5.03032699271367,3.19838616512726,4.00379263590285,0.831192346452549,2.63386572528503,1.83892677479412,3.00476117813194,3.62982986112067,32.469524059684,6.83383644219416,5.72216133130817,24.607469878921,3.81294358182224,20.868883743696,1.67505170698431,13.8396592437838,6.52827934580031,22.2141721334821,3.22174645248048,3.23292113637624,23.7856426986132,2.82105875037393,3.89989362314122,0,0,0,0,0,0.116193942869518,0.10366105501537,0.252320850875628,0,0,16.724264393015,0,13.0023019848954,17.3251075600701,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0.4115740113314,1.47008711385542,0,0,0.590789906681404,0,0,3.25978839567199,0,0,0,0,0.651616610620649,4.15973914111831,0,0,0.70445216541493,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0.766765358330422,0,0,0,0,0,0.253991577168676,0,0,1.71072446022705,1.64523988325318,0,0,1.45770409648969,0.43596006883328,6.82046058134835,0.904902010304444,10.7296933755565,21.1325688139,6.38251479803689,4.16029747645464,3.08648849114571,0,2.66422179016099,28.7385767252877,12.4802969240032,3.29296134712308,16.9382815832742,14.9264618471869,8.71147060226772,0,0,0.199945982364114,0,0,0,2.63587341040741,2.29723871668228,2.85273810081437,2.17171960001369,1.84928690295345,0.358121926479791,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,21.4710110508495,24.0081850108645,13.8345162086865,24.9565033836969,27.6564932635601,16.0856463334613,5.85707074963566,0.601892199455438,0,7.24311499047534,16.6056399633859,1.10621501125022,10.3391501217019,7.63624514104688,12.6963066810017,0,0,0.106727557803444,0,0,0.604780586659361,0.496215615637554,2.455391572609,1.96462066103151,0.768834895534206,0.511707249066704,2.57366273829772,0,14.8041306050549,12.2517590466058,12.3190734020714,9.34657972530518,18.2450294182136,0,0,0,7.00368133804101,16.3882051206045,15.472680965212,0,0.0770153371044148,0,0,0.211103257785751,0,0,0,0,1.35473218771926,1.50506932156456,0,0,0,0,0,0,0,1.30151357865721,0.721287081534056,0,0,0,0.650060246036521,1.6068392984416,31.1279712900633,7.54838223861757,9.97773885719842,4.82428003695857,16.113036730241,13.0515024522806,4.94314439013385,45.3173061441893,0,0,0,0,1.85938219718914,29.5923606020802,0,0.924100740528266,0,0,0.18532421910392,0,2.60510858551767,0.316379424718726,0.38126038784765,3.32667128704734,12.8381696410176,0,0.78494864019923,2.33834194858309,4.39259247577688,3.29874726567922,0.202182481573316,0,0.842516912477962,2.43816869544795,5.36169677188826,1.05650146756755,18.2909881286701,19.0897333137512,0,1.10273068709225,0,0,8.68163301400032,12.462000288886,0.405820753925408,0.6196469961995,0.563391205064483,6.02327679257016,3.53696547647236,0,1.06428319221179,12.0331352119669,16.794039540955,1.13841952129715,4.89908608342976,0,0.670302275535787,0,0.941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0,0,0.824019371133798,0,1.19548792950642,0,0,0,0,0.622079175323615,0,0,0,1.1837208676432,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0.520874984799877,0,0,0,0,0,0,0,0,1.30815439456455,0,0,0,0,0,0.641183153813036,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,0,4.27721101453538,0,0,0,0,6.42062117839031,0,0,0,0.242780379534093,1.18375320854817,8.46935012340647,0,0.821425535170343,0,0,0,0,0,0,0,0.138674673013139,0,0,0,2.09672001890436,2.57979048707425,0,0,0,0.290967049465258,0,4.51961481561065,4.52238351334278,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,4.48792157599816,1.73370353940911,0,0,0,0,0,0.837847203816763,0.687481272035051,1.43574604915363,0.998395002494955,2.57535628881943,0,0.671834724867263,7.92659743793288,0,0,0,0,0,0.254019996197353,1.59045937961861,0.136203406111576,0.160753148465019,0,0,0,0,0,0,0.157611414598396,0.629455057619977,0,0,0,2.1440859791201,1.986275911096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| |||
|short_description=p@chr2:238267161..238267198,+ | |||
}} |
Latest revision as of 08:10, 29 July 2015
Short description: | p@chr2:238267161..238267198, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:238267161..238267198, + |
Coexpression cluster: | C4204_Skeletal_tenocyte_Fibroblast_Smooth_Olfactory_Nucleus_Mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.18e-31 | 76 |
multi fate stem cell | 6.65e-17 | 427 |
somatic stem cell | 4.77e-16 | 433 |
stem cell | 5.93e-15 | 441 |
skin fibroblast | 2.90e-14 | 23 |
muscle precursor cell | 3.09e-12 | 58 |
myoblast | 3.09e-12 | 58 |
multi-potent skeletal muscle stem cell | 3.09e-12 | 58 |
muscle cell | 6.65e-12 | 55 |
connective tissue cell | 3.14e-11 | 361 |
electrically responsive cell | 1.10e-09 | 61 |
electrically active cell | 1.10e-09 | 61 |
cell of skeletal muscle | 3.49e-09 | 9 |
mesenchymal stem cell of adipose | 1.05e-08 | 8 |
mesenchymal cell | 1.27e-08 | 354 |
motile cell | 4.24e-07 | 386 |
stromal cell | 8.08e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
somite | 1.61e-14 | 71 |
presomitic mesoderm | 1.61e-14 | 71 |
presumptive segmental plate | 1.61e-14 | 71 |
dermomyotome | 1.61e-14 | 71 |
trunk paraxial mesoderm | 1.61e-14 | 71 |
paraxial mesoderm | 4.04e-14 | 72 |
presumptive paraxial mesoderm | 4.04e-14 | 72 |
dense mesenchyme tissue | 9.84e-14 | 73 |
epithelial vesicle | 2.84e-13 | 78 |
muscle tissue | 1.74e-12 | 64 |
musculature | 1.74e-12 | 64 |
musculature of body | 1.74e-12 | 64 |
skeletal muscle tissue | 2.11e-12 | 62 |
striated muscle tissue | 2.11e-12 | 62 |
myotome | 2.11e-12 | 62 |
multilaminar epithelium | 3.19e-12 | 83 |
connective tissue | 7.26e-11 | 371 |
trunk mesenchyme | 8.08e-11 | 122 |
mesenchyme | 1.55e-10 | 160 |
entire embryonic mesenchyme | 1.55e-10 | 160 |
integument | 3.63e-10 | 46 |
integumental system | 3.63e-10 | 46 |
surface structure | 7.07e-09 | 99 |
skin of body | 6.17e-08 | 41 |
mesoderm | 7.11e-08 | 315 |
mesoderm-derived structure | 7.11e-08 | 315 |
presumptive mesoderm | 7.11e-08 | 315 |
articulation | 3.10e-07 | 8 |
skeletal joint | 3.10e-07 | 8 |
articular system | 3.10e-07 | 8 |