FFCP PHASE1:Hg19::chr3:145911228..145911232,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:145911228..145911232,-
|short_description=p@chr3:145911228..145911232,-
|description=CAGE_peak_at_chr3:145911228..145911232,-
|association_with_transcript=...") |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:145911228..145911232,- | |||
|description=CAGE_peak_at_chr3:145911228..145911232,- | |||
|id=chr3:145911228..145911232,- | |||
|ontology_enrichment_celltype=CL:0002139!2.61e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0002138;9.58e-22;6!CL:0002545;6.98e-17;2!CL:0002139;1.01e-15;24!CL:0002494;1.55e-12;16!CL:0002615;1.43e-11;3!CL:0002078;9.74e-10;45!CL:0000115;1.19e-09;36!CL:0000569;4.23e-09;4!CL:0000213;4.18e-07;58!CL:0000215;4.18e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,5.79e-22,6;CL:0002138,5.79e-22,6;CL:0005022,5.79e-22,6;CL:0002545,7.02e-17,2;CL:0002139,8.15e-16,24;CL:0002078,2.47e-13,45;CL:0002494,1.53e-12,16;CL:0000213,1.97e-12,58;CL:0000215,1.97e-12,58;CL:0002615,2.57e-11,3;CL:0000115,2.76e-10,36;CL:0000569,4.89e-09,4;CL:0000011,4.89e-09,4;CL:0000222,1.27e-07,121 | |||
|ontology_enrichment_development_v019=CL:0005022;9.58e-22;6!CL:0000011;4.23e-09;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5662;2.65e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:5662,3.83e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0000477!7.32e-10!286;UBERON:0001009!6.10e-08!113;UBERON:0004111!1.39e-07!241;UBERON:0004535!2.07e-07!110;UBERON:0000025!2.41e-07!194;UBERON:0007100!2.63e-07!27;UBERON:0003914!3.69e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0005800;6.98e-17;2!UBERON:0001515;6.98e-17;2!UBERON:0001473;2.25e-16;8!UBERON:0004536;2.25e-16;8!UBERON:0006558;2.25e-16;8!UBERON:0002465;3.85e-13;10!UBERON:0000948;9.27e-13;22!UBERON:0007100;3.59e-11;25!UBERON:0002134;2.65e-09;1!UBERON:0005208;2.65e-09;1!UBERON:0004145;2.65e-09;1!UBERON:0005946;2.65e-09;1!UBERON:0005965;2.65e-09;1!UBERON:0002078;2.65e-09;1!UBERON:0004457;1.21e-08;9!UBERON:0000042;1.21e-08;9!UBERON:0002405;2.66e-07;27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005800,7.02e-17,2;UBERON:0001515,7.02e-17,2;UBERON:0001473,1.55e-16,8;UBERON:0004536,1.55e-16,8;UBERON:0006558,1.55e-16,8;UBERON:0004535,5.89e-14,109;UBERON:0001009,1.65e-13,112;UBERON:0002465,2.86e-13,10;UBERON:0000948,1.11e-11,24;UBERON:0005498,1.11e-11,24;UBERON:0004140,1.11e-11,24;UBERON:0009881,1.11e-11,24;UBERON:0004141,1.11e-11,24;UBERON:0003084,1.11e-11,24;UBERON:0007005,1.11e-11,24;UBERON:0004139,1.11e-11,24;UBERON:0004291,1.11e-11,24;UBERON:0007100,2.50e-10,27;UBERON:0002134,2.16e-09,1;UBERON:0005208,2.16e-09,1;UBERON:0005946,2.16e-09,1;UBERON:0005965,2.16e-09,1;UBERON:0002078,2.16e-09,1;UBERON:0002049,9.25e-09,78;UBERON:0007798,9.25e-09,78;UBERON:0000055,2.52e-08,68;UBERON:0004872,3.79e-08,83 | |||
|phase1_expression=0.726713517082227,0.428201047781966,0,1.0007329835313,1.34088328328186,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0.313454721478088,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0.199463657621632,0.426224750532694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0.12786256184353,0.722878304769133,0,0.289693037921647,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0.275118041940067,0,0.516833518338658,1.42306505074684,0,3.22263453687318,0.760272105718513,0.732186172644509,1.10298924103761,1.62028389576352,0.17859945656816,0.22452937262617,0,0,0,0.366403487860815,0,0,0,0.993943903390637,0,0,0,0.354668382198357,0,0,0,0,1.34710672069688,1.47115712802113,1.21085942115945,0.576175924479999,0,0,0,0,0.23486899728753,0,0,0.204154171254893,0,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0,0.150238058906597,0.453728732640084,0,0,0.635795703478686,0,0.618315175430633,0,0,0,0.0974370051611986,0.252433774244115,0.276149695926898,1.61646056818812,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168584690078102,0.241011029883482,0.110293972732394,0,0,0.134831308160164,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,1.73239737313289,1.38895653772983,5.32711626256875,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0.102827492703324,0,0.285826432630578,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0.285955987316295,0,0,0,0.355391948742546,0,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0.813795071099207,0.623912584592421,0,0.157702415033935,0.468565659970853,0.300946099727719,0,0,0,0,0.0868836144680828,0,0.686286847621712,0,0,0,0,0,0,0.992431231275107,0.153461973288062,0,0.128139149255701,0,0.160853921143607,0,0,0,0.0821271560138091,0.519254429183621,0.232420756919918,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0.340187410553031,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0.308097234229289,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0.31481234683064,0.6970372701606,0,0,0,0,0.715624433709956,0,0.316379424718726,0,0,0.855877976067841,0,0.78494864019923,0,0,0,0,0,0.842516912477962,0,0.243713489631284,0,0.136499911407986,0.141405431953713,0,0,0.66343897524122,1.75380354101505,0,0,0,0,0,0,0,0.35667105148125,0,0.422215270595328,2.30506425071931,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.281338832821026,0.111308705022906,0,0,0.597743964753209,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0.230850775511391,0.227884111694002,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0.210998064528027,0,0.141353071433941,0,0,0.176915129006678,0.611030144933625,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0.189559738885464,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0.34945333648406,0.171986032471617,0,0,0,0.193978032976839,0,0,0,0,0.0633107959558787,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0.273810757783986,0,0.429765441419957,0,0.837847203816763,0,1.43574604915363,0.199679000498991,0,0.669514372325618,0,0.360299883542404,0,0,0,0,0.0984274815147488,0,0.795229689809303,0.136203406111576,0,0,0,0,0,0,0,0.157611414598396,0,0.105600336519406,0,0,0.714695326373367,0,0,0.542999601753713,0,0.326587360109409,0,0,0.170388021785422,0,0.293104467356165,0,0.646414781807753,0.26446520348538,0,0,0.106787412567695,0.471612915298998,0,0,0,0,0,0.544017803369474,0,0,0.655745261419609,0,0,0.366078794705889,0.250381861413,0,0.221858103073705,0.0620964029413835,0,0,0,0,0,0,0,0.74627401443437,0.467426619694449,0,0.378806010550178,1.0062716070103,0,2.05956061557231,0.756154618816195,0.777186002913902,1.33069634990671,0.955780602982214,0.449803112163605,0.931577741257556,0.414706207840855,0.265841714557995,0,0.901545653983311,0.380805212168795,0.406870733204662,0.727394636810238,0.644463342254931,0,0,0,0.686791410365586,0,0,0.192619830407303,1.92997432237433,0,0.226705925512272,0,0,0.179088841081487,0,0,0,0,1.52048196587765,0,0,0.303859956177382,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11728983594649,0,0,0,0.352675943690684,0.3062454773532,0,0,0.319267718114302,0.41023272848151,0,0,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0.49131575253029,0,0,0,0.206686796501184,0,0,0,0.992422356778588,0,0,0,0,0,0,0,0,1.20041606606193,0.0679697329768317,0.0657727735628491,0,0.111231401892069,0,0.157115589916002,0,0.913158720509496,0,0,0.0714765441766563,0,0,0,0,0,0.17071847709395,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0.102662806856247,0,0.485710993059139,0,0,0,0,0,0,0.231522474323834,0.218559560503957,0,0,0,0,0,0,0.169927114687817,0,0.0644578879735772,0,0.357107877211315,0,0,0,0,0.143339583151451,0,0,0,1.0580536810308,0,0.462175628631418,0,0,0,0,0,0,0.275684698604535,0,0.151557396436479,0.267964130156178,0.829169439458779,0,0.426467963801962,0.23806443146374,0,0.0620747142958579,0.33639558774184,0.12729431655633,0.202117188958219,0.217716747896961,0.342233301085281,0.0673520530145875,0.0717222053926763,0.665320713092027,0,0.106727345877715,0,0,0,0.366724332548599,0.406896178315738,0,0,0 | |phase1_expression=0.726713517082227,0.428201047781966,0,1.0007329835313,1.34088328328186,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0.313454721478088,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0.199463657621632,0.426224750532694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0.12786256184353,0.722878304769133,0,0.289693037921647,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0.275118041940067,0,0.516833518338658,1.42306505074684,0,3.22263453687318,0.760272105718513,0.732186172644509,1.10298924103761,1.62028389576352,0.17859945656816,0.22452937262617,0,0,0,0.366403487860815,0,0,0,0.993943903390637,0,0,0,0.354668382198357,0,0,0,0,1.34710672069688,1.47115712802113,1.21085942115945,0.576175924479999,0,0,0,0,0.23486899728753,0,0,0.204154171254893,0,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0,0.150238058906597,0.453728732640084,0,0,0.635795703478686,0,0.618315175430633,0,0,0,0.0974370051611986,0.252433774244115,0.276149695926898,1.61646056818812,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168584690078102,0.241011029883482,0.110293972732394,0,0,0.134831308160164,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,1.73239737313289,1.38895653772983,5.32711626256875,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0.102827492703324,0,0.285826432630578,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0.285955987316295,0,0,0,0.355391948742546,0,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0.813795071099207,0.623912584592421,0,0.157702415033935,0.468565659970853,0.300946099727719,0,0,0,0,0.0868836144680828,0,0.686286847621712,0,0,0,0,0,0,0.992431231275107,0.153461973288062,0,0.128139149255701,0,0.160853921143607,0,0,0,0.0821271560138091,0.519254429183621,0.232420756919918,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0.340187410553031,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0.308097234229289,0,0,0,0,0,0,0.165284915360978,0,0,0,0,0.31481234683064,0.6970372701606,0,0,0,0,0.715624433709956,0,0.316379424718726,0,0,0.855877976067841,0,0.78494864019923,0,0,0,0,0,0.842516912477962,0,0.243713489631284,0,0.136499911407986,0.141405431953713,0,0,0.66343897524122,1.75380354101505,0,0,0,0,0,0,0,0.35667105148125,0,0.422215270595328,2.30506425071931,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.281338832821026,0.111308705022906,0,0,0.597743964753209,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0.230850775511391,0.227884111694002,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0.210998064528027,0,0.141353071433941,0,0,0.176915129006678,0.611030144933625,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0.189559738885464,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0.34945333648406,0.171986032471617,0,0,0,0.193978032976839,0,0,0,0,0.0633107959558787,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0.273810757783986,0,0.429765441419957,0,0.837847203816763,0,1.43574604915363,0.199679000498991,0,0.669514372325618,0,0.360299883542404,0,0,0,0,0.0984274815147488,0,0.795229689809303,0.136203406111576,0,0,0,0,0,0,0,0.157611414598396,0,0.105600336519406,0,0,0.714695326373367,0,0,0.542999601753713,0,0.326587360109409,0,0,0.170388021785422,0,0.293104467356165,0,0.646414781807753,0.26446520348538,0,0,0.106787412567695,0.471612915298998,0,0,0,0,0,0.544017803369474,0,0,0.655745261419609,0,0,0.366078794705889,0.250381861413,0,0.221858103073705,0.0620964029413835,0,0,0,0,0,0,0,0.74627401443437,0.467426619694449,0,0.378806010550178,1.0062716070103,0,2.05956061557231,0.756154618816195,0.777186002913902,1.33069634990671,0.955780602982214,0.449803112163605,0.931577741257556,0.414706207840855,0.265841714557995,0,0.901545653983311,0.380805212168795,0.406870733204662,0.727394636810238,0.644463342254931,0,0,0,0.686791410365586,0,0,0.192619830407303,1.92997432237433,0,0.226705925512272,0,0,0.179088841081487,0,0,0,0,1.52048196587765,0,0,0.303859956177382,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11728983594649,0,0,0,0.352675943690684,0.3062454773532,0,0,0.319267718114302,0.41023272848151,0,0,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0.49131575253029,0,0,0,0.206686796501184,0,0,0,0.992422356778588,0,0,0,0,0,0,0,0,1.20041606606193,0.0679697329768317,0.0657727735628491,0,0.111231401892069,0,0.157115589916002,0,0.913158720509496,0,0,0.0714765441766563,0,0,0,0,0,0.17071847709395,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0.102662806856247,0,0.485710993059139,0,0,0,0,0,0,0.231522474323834,0.218559560503957,0,0,0,0,0,0,0.169927114687817,0,0.0644578879735772,0,0.357107877211315,0,0,0,0,0.143339583151451,0,0,0,1.0580536810308,0,0.462175628631418,0,0,0,0,0,0,0.275684698604535,0,0.151557396436479,0.267964130156178,0.829169439458779,0,0.426467963801962,0.23806443146374,0,0.0620747142958579,0.33639558774184,0.12729431655633,0.202117188958219,0.217716747896961,0.342233301085281,0.0673520530145875,0.0717222053926763,0.665320713092027,0,0.106727345877715,0,0,0,0.366724332548599,0.406896178315738,0,0,0 | ||
|short_description=p@chr3:145911228..145911232,- | |||
}} | }} |
Latest revision as of 16:38, 29 July 2015
Short description: | p@chr3:145911228..145911232, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:145911228..145911232, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 5.79e-22 | 6 |
endothelial cell of lymphatic vessel | 5.79e-22 | 6 |
vascular lymphangioblast | 5.79e-22 | 6 |
thoracic aorta endothelial cell | 7.02e-17 | 2 |
endothelial cell of vascular tree | 8.15e-16 | 24 |
meso-epithelial cell | 2.47e-13 | 45 |
cardiocyte | 1.53e-12 | 16 |
lining cell | 1.97e-12 | 58 |
barrier cell | 1.97e-12 | 58 |
adipocyte of omentum tissue | 2.57e-11 | 3 |
endothelial cell | 2.76e-10 | 36 |
cardiac mesenchymal cell | 4.89e-09 | 4 |
migratory trunk neural crest cell | 4.89e-09 | 4 |
mesodermal cell | 1.27e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
segment of aorta | 7.02e-17 | 2 |
thoracic aorta | 7.02e-17 | 2 |
lymphatic vessel | 1.55e-16 | 8 |
lymph vasculature | 1.55e-16 | 8 |
lymphatic part of lymphoid system | 1.55e-16 | 8 |
cardiovascular system | 5.89e-14 | 109 |
circulatory system | 1.65e-13 | 112 |
lymphoid system | 2.86e-13 | 10 |
heart | 1.11e-11 | 24 |
primitive heart tube | 1.11e-11 | 24 |
primary heart field | 1.11e-11 | 24 |
anterior lateral plate mesoderm | 1.11e-11 | 24 |
heart tube | 1.11e-11 | 24 |
heart primordium | 1.11e-11 | 24 |
cardiac mesoderm | 1.11e-11 | 24 |
cardiogenic plate | 1.11e-11 | 24 |
heart rudiment | 1.11e-11 | 24 |
primary circulatory organ | 2.50e-10 | 27 |
tricuspid valve | 2.16e-09 | 1 |
right atrium valve | 2.16e-09 | 1 |
outflow tract of atrium | 2.16e-09 | 1 |
outflow part of right atrium | 2.16e-09 | 1 |
right cardiac atrium | 2.16e-09 | 1 |
vasculature | 9.25e-09 | 78 |
vascular system | 9.25e-09 | 78 |
vessel | 2.52e-08 | 68 |
splanchnic layer of lateral plate mesoderm | 3.79e-08 | 83 |
Ontology term | p-value | n |
---|---|---|
pleomorphic carcinoma | 3.83e-09 | 1 |